Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0010103

Physical Location & Seq

Genomic Coordinates Reverse (-)

1578799 .. 1584015

Gene Structure 5217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G000800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGCCTGTAAAGACAGAACCGTGCAGATACTTTCAGCGTGGCAGCTGTCAGTATGGAGATAAGTGTAGATATCTTCATGTAACTCAGCAACAGCCAAAGTCGAATATCTTTGGTGGATCCCAATCTGGCTCATATCAGCACCAAAAGTCCAATCCTTATGGTTTTGGTGTTCATAACAACTCTCAGTCAAAAGCGGGAACTGATAAGCCTTTCGAAAACAAATGGACTCGTTCCTCCTCCGCAGCTGCTACTGCTACTCCTTCATCACGGAGATCTGATAACCAGCCCCAGACAACGAATCATGAGTGCACAAATCCCGAGTCTTGCAGAAGTATAATTAATGAAGATTTTGAGCGTGAGAGACCACTTTGGAAACTTACCTGCTATGGTCACTCAAGAAATTCTCCTTGTGATATTGTTGGTGATGTTAGTTACGAAGAATTGAGGGCACTGGCATATGATGATGCTAAGCGAGGGCTGAACTTGCCGTCAATAATTGAAAGAGAACGAAATCTGGTTAATACCAAGTCTATTGAGTTTGAAAATCTTCGCAAGCCCAGTGCTGTTCCACTGAACTCTACTGTTAGCCAAAGCCCTTTCGCTTCAGCTACTGCAAATGCATTCTTGCAGACTCCTCAAAGTAGTGCTCCTCCTTCAGTATCGAGTTTCAGCCAGTTTGGTACATCCCTCAACGTGGGATTTGGACAAAGGCAAGTCTCACTTCTCCTATTTAGACTACATTGGCCATCTGCACCAGCAAATAATGGCTTTTTTCAGCCGAGCCTGTTCATGAATTCTAGCCATGCTTCAAGTGGATTTGGGACAAACAATATTCCATCTGCAAACGTTGGTTCACTTGCCAGCCAATCTCATAACAGTACACGCGGAAGTATTTTTACCCACAATGTAGGATTTGGCAACACTGATGTCATGAGACCTGACAGCAACCAAATATCTAGTTCAGCAGTGCCATCACAATTTCCTAGTGCTACAAGTAGCCAACCACTTATTGTTTCAGATGGGCCTGGCTCTGCTTCCATTTTAAGTGGACAAGTAACTGCAGAAGCTCAGTCATTAAATAACATACAAAGAGAGAAGATTTCTGGGGACATGAGTATTTGGTTGAAAAAGAAATGGACACCTGGAGAGGTTCCAGAAGAAGAACCGCCAGATGCATTGGTTCAGATTGACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0012505 GO:0023051 GO:0023057 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:1900457 GO:1900458 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

398

Amino Acids

43.4

Weight (kDa)

8.13

Isoelectric Point (pI)

62.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	4 - 27	1.7e-09	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4	PF18044	7 - 26	1.6e-08	CCCH-type zinc finger
zf_CCCH_4	PF18345	8 - 26	1.6e-07	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75340 AT1G75340 AT1G75340
fragaria_vesca	FvH4_4g00131
malus_domestica	MD04G1000600.v1.1
prunus_persica	Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0384751
rosa_laevigata	RLG00000010275
rosa_multiflora	Rmu_sc0001322.1_g000021
rosa_roxburghii	Rroxscaffold_5G00332810
rosa_rugosa	Rorug03G0297500
rosa_samantha	Rh4AG000900 Rh4BG000800 Rh4CG000700 Rh4DG000800
rosa_wichuraiana	Rw0G021990 Rw4G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	389
AccII	CGCG	1 cut(s)	885
AciI	CCGC	4 cut(s)	194, 240, 885, 1166
AclI	AACGTT	1 cut(s)	846
AclWI	GGATC	2 cut(s)	111, 124
AcoI	YGGCCR	1 cut(s)	743
AcsI	RAATTY	2 cut(s)	400, 793
AcuI	CTGAAG	2 cut(s)	588, 639
AfaI	GTAC	2 cut(s)	682, 880
AfiI	CCNNNNNNNGG	1 cut(s)	694
AgsI	TTSAA	4 cut(s)	500, 542, 810, 1126
AjnI	CCWGG	2 cut(s)	1024, 1141
AluBI	AGCT	4 cut(s)	45, 245, 608, 1067
AluI	AGCT	4 cut(s)	45, 245, 608, 1067
Alw21I	GWGCWC	2 cut(s)	311, 649
Alw26I	GTCTC	3 cut(s)	355, 721, 928
Alw44I	GTGCAC	1 cut(s)	307
AlwI	GGATC	2 cut(s)	111, 124
AlwNI	CAGNNNCTG	1 cut(s)	611
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	2 cut(s)	743, 1022
ApaLI	GTGCAC	1 cut(s)	307
ApeKI	GCWGC	3 cut(s)	42, 242, 245
ApoI	RAATTY	2 cut(s)	400, 793
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AseI	ATTAAT	1 cut(s)	339
Asp700I	GAANNNNTTC	1 cut(s)	546
AspS9I	GGNCC	1 cut(s)	1022
AsuHPI	GGTGA	1 cut(s)	434
AsuII	TTCGAA	1 cut(s)	213
AvaI	CYCGRG	1 cut(s)	317
BaeGI	GKGCMC	2 cut(s)	311, 451
BalI	TGGCCA	1 cut(s)	745
BamHI	GGATCC	1 cut(s)	116
BarI	GAAGNNNNNNTAC	2 cut(s)	880, 912
Bbv12I	GWGCWC	2 cut(s)	311, 649
BbvI	GCAGC	3 cut(s)	54, 232, 254
BccI	CCATC	4 cut(s)	754, 844, 979, 1013
BceAI	ACGGC	1 cut(s)	472
BciT130I	CCWGG	2 cut(s)	1026, 1143
BcoDI	GTCTC	3 cut(s)	355, 721, 928
BfaI	CTAG	3 cut(s)	798, 957, 984
BfmI	CTRYAG	1 cut(s)	1059
BfuAI	ACCTGC	1 cut(s)	389
BglII	AGATCT	1 cut(s)	272
BisI	GCNGC	3 cut(s)	43, 243, 246
BlpI	GCTNAGC	1 cut(s)	468
BlsI	GCNGC	3 cut(s)	44, 244, 247
Bme1390I	CCNGG	2 cut(s)	1026, 1143
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	1022
BmiI	GGNNCC	2 cut(s)	118, 1152
BmrFI	CCNGG	2 cut(s)	1026, 1143
BmrI	ACTGGG	1 cut(s)	552
BmsI	GCATC	2 cut(s)	454, 1162
BmuI	ACTGGG	1 cut(s)	552
BpmI	CTGGAG	1 cut(s)	1164
Bpu1102I	GCTNAGC	1 cut(s)	468
Bpu14I	TTCGAA	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	379
BsaBI	GATNNNNATC	1 cut(s)	121
BsaI	GGTCTC	2 cut(s)	355, 928
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	694
Bse1I	ACTGG	3 cut(s)	456, 558, 673
Bse8I	GATNNNNATC	1 cut(s)	121
BseBI	CCWGG	2 cut(s)	1026, 1143
BseGI	GGATG	1 cut(s)	683
BseJI	GATNNNNATC	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	694
BseMII	CTCAG	3 cut(s)	98, 197, 1082
BseNI	ACTGG	3 cut(s)	456, 558, 673
BseRI	GAGGAG	3 cut(s)	226, 624, 639
BseSI	GKGCMC	2 cut(s)	311, 451
BseXI	GCAGC	3 cut(s)	54, 232, 254
BsgI	GTGCAG	2 cut(s)	43, 735
Bsh1236I	CGCG	1 cut(s)	885
BshFI	GGCC	2 cut(s)	745, 1024
BsiHKAI	GWGCWC	2 cut(s)	311, 649
BsiHKCI	CYCGRG	1 cut(s)	317
BslFI	GGGAC	2 cut(s)	835, 1121
BslI	CCNNNNNNNGG	1 cut(s)	694
BsmAI	GTCTC	3 cut(s)	355, 721, 928
BsmFI	GGGAC	2 cut(s)	835, 1121
BsmI	GAATGC	1 cut(s)	620
BsnI	GGCC	2 cut(s)	745, 1024
Bso31I	GGTCTC	2 cut(s)	355, 928
BsoBI	CYCGRG	1 cut(s)	317
Bsp119I	TTCGAA	1 cut(s)	213
Bsp1286I	GDGCHC	3 cut(s)	311, 451, 649
Bsp143I	GATC	2 cut(s)	116, 272
Bsp1720I	GCTNAGC	1 cut(s)	468
BspACI	CCGC	4 cut(s)	194, 240, 885, 1166
BspANI	GGCC	2 cut(s)	745, 1024
BspCNI	CTCAG	3 cut(s)	97, 196, 1081
BspFNI	CGCG	1 cut(s)	885
BspHI	TCATGA	3 cut(s)	301, 789, 930
BspLI	GGNNCC	2 cut(s)	118, 1152
BspMAI	CTGCAG	1 cut(s)	1063
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	2 cut(s)	111, 124
BspT104I	TTCGAA	1 cut(s)	213
BspTNI	GGTCTC	2 cut(s)	355, 928
BsrI	ACTGG	3 cut(s)	456, 558, 673
BssMI	GATC	2 cut(s)	116, 272
Bst2UI	CCWGG	2 cut(s)	1026, 1143
Bst4CI	ACNGT	3 cut(s)	21, 583, 878
BstBI	TTCGAA	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	554, 862
BstDEI	CTNAG	4 cut(s)	84, 183, 468, 1068
BstF5I	GGATG	1 cut(s)	683
BstFNI	CGCG	1 cut(s)	885
BstKTI	GATC	2 cut(s)	119, 275
BstMAI	GTCTC	3 cut(s)	355, 721, 928
BstMBI	GATC	2 cut(s)	116, 272
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 484
BstNI	CCWGG	2 cut(s)	1026, 1143
BstSCI	CCNGG	2 cut(s)	1024, 1141
BstSFI	CTRYAG	1 cut(s)	1059
BstSLI	GKGCMC	2 cut(s)	311, 451
BstUI	CGCG	1 cut(s)	885
BstV1I	GCAGC	3 cut(s)	54, 232, 254
BstX2I	RGATCY	2 cut(s)	116, 272
BstYI	RGATCY	2 cut(s)	116, 272
BsuRI	GGCC	2 cut(s)	745, 1024
BtsCI	GGATG	1 cut(s)	683
BtsI	GCAGTG	1 cut(s)	972
BtsIMutI	CAGTG	5 cut(s)	449, 565, 569, 921, 972
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	2 cut(s)	554, 862
CaiI	CAGNNNCTG	1 cut(s)	611
CciI	TCATGA	3 cut(s)	301, 789, 930
Cfr13I	GGNCC	1 cut(s)	1022
Csp6I	GTAC	2 cut(s)	681, 879
CviAII	CATG	6 cut(s)	77, 302, 790, 803, 931, 1111
CviQI	GTAC	2 cut(s)	681, 879
DdeI	CTNAG	4 cut(s)	84, 183, 468, 1068
DpnI	GATC	2 cut(s)	118, 274
DpnII	GATC	2 cut(s)	116, 272
EaeI	YGGCCR	1 cut(s)	743
Eco31I	GGTCTC	2 cut(s)	355, 928
Eco32I	GATATC	1 cut(s)	71
Eco57I	CTGAAG	2 cut(s)	588, 639
Eco88I	CYCGRG	1 cut(s)	317
EcoRI	GAATTC	1 cut(s)	793
EcoRII	CCWGG	2 cut(s)	1024, 1141
EcoRV	GATATC	1 cut(s)	71
EcoT22I	ATGCAT	2 cut(s)	622, 1177
FaeI	CATG	6 cut(s)	80, 305, 793, 806, 934, 1114
FalI	AAGNNNNNCTT	2 cut(s)	705, 737
FaqI	GGGAC	2 cut(s)	835, 1121
FatI	CATG	6 cut(s)	76, 301, 789, 802, 930, 1110
FauI	CCCGC	1 cut(s)	187
FauNDI	CATATG	1 cut(s)	457
Fnu4HI	GCNGC	3 cut(s)	43, 243, 246
FokI	GGATG	1 cut(s)	670
Fsp4HI	GCNGC	3 cut(s)	43, 243, 246
FspBI	CTAG	3 cut(s)	798, 957, 984
GluI	GCNGC	3 cut(s)	43, 243, 246
GsuI	CTGGAG	1 cut(s)	1164
HaeIII	GGCC	2 cut(s)	745, 1024
Hin1II	CATG	6 cut(s)	80, 305, 793, 806, 934, 1114
HinfI	GANTC	4 cut(s)	226, 298, 320, 631
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	4 cut(s)	309, 854, 881, 1049
Hpy188I	TCNGA	3 cut(s)	277, 1018, 1185
Hpy188III	TCNNGA	6 cut(s)	302, 317, 396, 790, 931, 1154
Hpy8I	GTNNAC	4 cut(s)	309, 854, 881, 1049
HpyAV	CCTTC	2 cut(s)	270, 663
HpyCH4III	ACNGT	3 cut(s)	21, 583, 878
HpyCH4IV	ACGT	2 cut(s)	693, 846
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 484
HpyF3I	CTNAG	4 cut(s)	84, 183, 468, 1068
HpySE526I	ACGT	2 cut(s)	693, 846
Hsp92II	CATG	6 cut(s)	80, 305, 793, 806, 934, 1114
Kzo9I	GATC	2 cut(s)	116, 272
LmnI	GCTCC	1 cut(s)	652
Lsp1109I	GCAGC	3 cut(s)	54, 232, 254
LweI	GCATC	2 cut(s)	454, 1162
MaeI	CTAG	3 cut(s)	798, 957, 984
MaeII	ACGT	2 cut(s)	693, 846
MaeIII	GTNAC	4 cut(s)	79, 389, 431, 1054
MalI	GATC	2 cut(s)	118, 274
MboI	GATC	2 cut(s)	116, 272
MboII	GAAGA	7 cut(s)	65, 356, 449, 539, 1108, 1169, 1172
MflI	RGATCY	2 cut(s)	116, 272
MhlI	GDGCHC	3 cut(s)	311, 451, 649
MlsI	TGGCCA	1 cut(s)	745
MluCI	AATT	6 cut(s)	336, 400, 440, 495, 793, 977
MluNI	TGGCCA	1 cut(s)	745
MlyI	GAGTC	3 cut(s)	220, 329, 625
MnlI	CCTC	8 cut(s)	244, 247, 438, 467, 645, 660, 698, 1141
Mox20I	TGGCCA	1 cut(s)	745
Mph1103I	ATGCAT	2 cut(s)	622, 1177
MroXI	GAANNNNTTC	1 cut(s)	546
MscI	TGGCCA	1 cut(s)	745
MseI	TTAA	4 cut(s)	339, 519, 1043, 1076
Msp20I	TGGCCA	1 cut(s)	745
MspA1I	CMGCKG	2 cut(s)	45, 245
MspR9I	CCNGG	2 cut(s)	1026, 1143
Mva1269I	GAATGC	1 cut(s)	620
MvaI	CCWGG	2 cut(s)	1026, 1143
MvnI	CGCG	1 cut(s)	885
MwoI	GCNNNNNNNGC	2 cut(s)	251, 484
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	2 cut(s)	116, 272
NlaIII	CATG	6 cut(s)	80, 305, 793, 806, 934, 1114
NlaIV	GGNNCC	2 cut(s)	118, 1152
NmeAIII	GCCGAG	1 cut(s)	804
NmuCI	GTSAC	1 cut(s)	389
NsiI	ATGCAT	2 cut(s)	622, 1177
NspV	TTCGAA	1 cut(s)	213
PagI	TCATGA	3 cut(s)	301, 789, 930
PctI	GAATGC	1 cut(s)	620
PdmI	GAANNNNTTC	1 cut(s)	546
PfeI	GAWTC	1 cut(s)	298
PkrI	GCNGC	3 cut(s)	44, 244, 247
PleI	GAGTC	3 cut(s)	220, 328, 625
PpsI	GAGTC	3 cut(s)	220, 328, 625
PshBI	ATTAAT	1 cut(s)	339
Psp1406I	AACGTT	1 cut(s)	846
Psp6I	CCWGG	2 cut(s)	1024, 1141
PspGI	CCWGG	2 cut(s)	1024, 1141
PspN4I	GGNNCC	2 cut(s)	118, 1152
PspPI	GGNCC	1 cut(s)	1022
PstI	CTGCAG	1 cut(s)	1063
PstNI	CAGNNNCTG	1 cut(s)	611
PsuI	RGATCY	2 cut(s)	116, 272
PvuII	CAGCTG	2 cut(s)	45, 245
RsaI	GTAC	2 cut(s)	682, 880
RsaNI	GTAC	2 cut(s)	681, 879
SaqAI	TTAA	4 cut(s)	339, 519, 1043, 1076
SatI	GCNGC	3 cut(s)	43, 243, 246
Sau3AI	GATC	2 cut(s)	116, 272
Sau96I	GGNCC	1 cut(s)	1022
SchI	GAGTC	3 cut(s)	220, 329, 625
ScrFI	CCNGG	2 cut(s)	1026, 1143
SduI	GDGCHC	3 cut(s)	311, 451, 649
SfaNI	GCATC	2 cut(s)	454, 1162
SfcI	CTRYAG	1 cut(s)	1059
SfuI	TTCGAA	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
Sse9I	AATT	6 cut(s)	336, 400, 440, 495, 793, 977
SsiI	CCGC	4 cut(s)	194, 240, 885, 1166
SspI	AATATT	1 cut(s)	832
SspMI	CTAG	3 cut(s)	798, 957, 984
StyD4I	CCNGG	2 cut(s)	1024, 1141
TaaI	ACNGT	3 cut(s)	21, 583, 878
TaiI	ACGT	2 cut(s)	696, 849
TaqI	TCGA	3 cut(s)	101, 213, 662
TasI	AATT	6 cut(s)	336, 400, 440, 495, 793, 977
TatI	WGTACW	1 cut(s)	878
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	4 cut(s)	339, 519, 1043, 1076
Tru9I	TTAA	4 cut(s)	339, 519, 1043, 1076
TscAI	CASTG	5 cut(s)	456, 565, 576, 928, 972
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	3 cut(s)	42, 242, 245
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	6 cut(s)	65, 161, 252, 357, 778, 806
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	5 cut(s)	456, 565, 576, 928, 972
VneI	GTGCAC	1 cut(s)	307
VspI	ATTAAT	1 cut(s)	339
XapI	RAATTY	2 cut(s)	400, 793
XcmI	CCANNNNNNNNNTGG	1 cut(s)	809
XmnI	GAANNNNTTC	1 cut(s)	546
XspI	CTAG	3 cut(s)	798, 957, 984
Zsp2I	ATGCAT	2 cut(s)	622, 1177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.