Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0010103

Physical Location & Seq

Genomic Coordinates Forward (+)

229002 .. 234574

Gene Structure 5573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG000800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGTATCCTCCAGTTTTGTCTGTATTCCACTTCCTCCCGTACTTGATTCGTCACCAACTTTTGTGTCTGAACCAAACTATAGACTGGCTTTATTTTGTTTTCATGATACTTTGTTTGTTATATATACATATAACTTTTTACCATGCTTCTTTCAGCTGTCAGTATGGAGATAAGTGTAGATATCTTCATGTGACTCAGCAACAGCCAAAGTCAAATATCTTTGGTGGATTTGGGTCGCAATCTGGCTCAGATCAGCACCAAAAGTCCAATCCTTATGGTTTTGGTGTTCAAAGCAACTCTCAGTCAAAAGCGGGAAGTGATAAGCCTTTCGAAAACAAATGGACTCGTTCCTCCCCCGCAATTGCTACTCCTTCATCACGGAGATCTGATAACCAGCCCCAGACAACAAATCATGAGTGCACAAATCCCGAGTCTTGCAGGAGTATAATTAATGAAGATTTTGAGCGTGAGAGACCACTTTGGAAACTTACCTGCTATGGTCACTCAAGAAATTCTCCTTGTGATATTGTTGGTGATGTTAGTTACGAAGAATTGAGGGCACTGGCATATGATGATGCTAAGCGAGGGCTGAACTTGCCGTCAATAATTGAAAGAGAACGAAATCTGGTTAATACCAAGTCTATTGAGTTTGAAAATCTTCGCAAGCCCCGTGCTGTTCCACTGAACTCTACTGTTAGCCAAAGCCCTTTCGCTTCAGCTACTGCAAATGCATTCTTGCAGACTCCTCAAAGTAGTGCTCCTCCTTCAGTATCGAGTTTCAGCCAGTTTGGTACATCCCTCAACGTGGGATTTGGACAAAGGCCATCTGCACCAGCAAATAATGGTTTTTTTCAGCCGAGCCTGTTCATGAATTCTAGCCATGCTTCAAGTGGATTTGGGACAAACAATATTCCATCTGCAAACGTTGGTTCACTTGCCAGCCAACCTCATAACAGTACACGCGGAAGTATTTTTACCCACAATGTAGGATTTGGCAACACTGATGTCATGAGACCTGACAGCAACCAAATATCTAGTTCAGCAGTGCCATCACAATTTCCTAGTGCTACAAGTAGCCAGCCACTTATTGTTTCAGACGGGCCTAGCTCTGCTTCCATTTCAAGTGGACAAGTAACTGCAGAAGCTCAGTCACTAAATAACATACAAAGAGAGAAGATTTCTGGGGACATGAGTATTTGGTTGAAAAAGAAATGGACACCTGGAGAGGTTCCAGAAGAAGAACCGCCAGATGCATTGGTTCAGATTGACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0012505 GO:0023051 GO:0023057 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:1900457 GO:1900458 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

424

Amino Acids

46.66

Weight (kDa)

6.83

Isoelectric Point (pI)

65.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75340 AT1G75340 AT1G75340
fragaria_vesca	FvH4_4g00131
malus_domestica	MD04G1000600.v1.1
prunus_persica	Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0384751
rosa_laevigata	RLG00000010275
rosa_multiflora	Rmu_sc0001322.1_g000021
rosa_roxburghii	Rroxscaffold_5G00332810
rosa_rugosa	Rorug03G0297500
rosa_samantha	Rh4AG000900 Rh4BG000800 Rh4CG000700 Rh4DG000800
rosa_wichuraiana	Rw0G021990 Rw4G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	500
AccII	CGCG	1 cut(s)	963
AciI	CCGC	4 cut(s)	311, 357, 963, 1244
AclI	AACGTT	1 cut(s)	924
AcsI	RAATTY	2 cut(s)	511, 871
AcuI	CTGAAG	2 cut(s)	699, 750
AfaI	GTAC	3 cut(s)	41, 793, 958
AfiI	CCNNNNNNNGG	1 cut(s)	805
AgsI	TTSAA	6 cut(s)	290, 611, 653, 888, 1122, 1204
AjnI	CCWGG	1 cut(s)	1219
AluBI	AGCT	4 cut(s)	156, 719, 1107, 1145
AluI	AGCT	4 cut(s)	156, 719, 1107, 1145
Alw21I	GWGCWC	2 cut(s)	422, 760
Alw26I	GTCTC	2 cut(s)	466, 1006
Alw44I	GTGCAC	1 cut(s)	418
AlwNI	CAGNNNCTG	1 cut(s)	722
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	2 cut(s)	821, 1100
ApaLI	GTGCAC	1 cut(s)	418
ApoI	RAATTY	2 cut(s)	511, 871
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AseI	ATTAAT	1 cut(s)	450
Asp700I	GAANNNNTTC	1 cut(s)	657
AspS9I	GGNCC	1 cut(s)	1100
AsuHPI	GGTGA	2 cut(s)	44, 545
AsuII	TTCGAA	1 cut(s)	330
AvaI	CYCGRG	1 cut(s)	428
BaeGI	GKGCMC	2 cut(s)	422, 562
BarI	GAAGNNNNNNTAC	2 cut(s)	958, 990
Bbv12I	GWGCWC	2 cut(s)	422, 760
BccI	CCATC	3 cut(s)	832, 922, 1057
BceAI	ACGGC	1 cut(s)	583
BciT130I	CCWGG	1 cut(s)	1221
BciVI	GTATCC	1 cut(s)	15
BcoDI	GTCTC	2 cut(s)	466, 1006
BfaI	CTAG	4 cut(s)	876, 1035, 1062, 1104
BfmI	CTRYAG	2 cut(s)	78, 1137
BfuAI	ACCTGC	1 cut(s)	500
BfuI	GTATCC	1 cut(s)	15
BglII	AGATCT	1 cut(s)	383
BlpI	GCTNAGC	1 cut(s)	579
Bme1390I	CCNGG	1 cut(s)	1221
BmeT110I	CYCGRG	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	1100
BmiI	GGNNCC	1 cut(s)	1230
BmrFI	CCNGG	1 cut(s)	1221
BmsI	GCATC	2 cut(s)	565, 1240
BpmI	CTGGAG	1 cut(s)	1242
Bpu1102I	GCTNAGC	1 cut(s)	579
Bpu14I	TTCGAA	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	490
BsaI	GGTCTC	2 cut(s)	466, 1006
Bsc4I	CCNNNNNNNGG	1 cut(s)	805
Bse1I	ACTGG	4 cut(s)	11, 89, 567, 784
BseBI	CCWGG	1 cut(s)	1221
BseGI	GGATG	1 cut(s)	794
BseLI	CCNNNNNNNGG	1 cut(s)	805
BseMII	CTCAG	4 cut(s)	209, 261, 314, 1160
BseNI	ACTGG	4 cut(s)	11, 89, 567, 784
BseRI	GAGGAG	2 cut(s)	735, 750
BseSI	GKGCMC	2 cut(s)	422, 562
BsgI	GTGCAG	1 cut(s)	813
Bsh1236I	CGCG	1 cut(s)	963
BshFI	GGCC	2 cut(s)	823, 1102
BsiHKAI	GWGCWC	2 cut(s)	422, 760
BsiHKCI	CYCGRG	1 cut(s)	428
BslFI	GGGAC	2 cut(s)	913, 1199
BslI	CCNNNNNNNGG	1 cut(s)	805
BsmAI	GTCTC	2 cut(s)	466, 1006
BsmFI	GGGAC	2 cut(s)	913, 1199
BsmI	GAATGC	1 cut(s)	731
BsnI	GGCC	2 cut(s)	823, 1102
Bso31I	GGTCTC	2 cut(s)	466, 1006
BsoBI	CYCGRG	1 cut(s)	428
Bsp119I	TTCGAA	1 cut(s)	330
Bsp1286I	GDGCHC	3 cut(s)	422, 562, 760
Bsp143I	GATC	2 cut(s)	250, 383
Bsp1720I	GCTNAGC	1 cut(s)	579
BspACI	CCGC	4 cut(s)	311, 357, 963, 1244
BspANI	GGCC	2 cut(s)	823, 1102
BspCNI	CTCAG	4 cut(s)	208, 260, 313, 1159
BspFNI	CGCG	1 cut(s)	963
BspHI	TCATGA	4 cut(s)	102, 412, 867, 1008
BspLI	GGNNCC	1 cut(s)	1230
BspMAI	CTGCAG	1 cut(s)	1141
BspMI	ACCTGC	1 cut(s)	500
BspT104I	TTCGAA	1 cut(s)	330
BspTNI	GGTCTC	2 cut(s)	466, 1006
BsrI	ACTGG	4 cut(s)	11, 89, 567, 784
BssMI	GATC	2 cut(s)	250, 383
Bst2UI	CCWGG	1 cut(s)	1221
Bst4CI	ACNGT	2 cut(s)	694, 956
BstBI	TTCGAA	1 cut(s)	330
BstC8I	GCNNGC	3 cut(s)	665, 940, 1079
BstDEI	CTNAG	5 cut(s)	195, 247, 300, 579, 1146
BstF5I	GGATG	1 cut(s)	794
BstFNI	CGCG	1 cut(s)	963
BstKTI	GATC	2 cut(s)	253, 386
BstMAI	GTCTC	2 cut(s)	466, 1006
BstMBI	GATC	2 cut(s)	250, 383
BstMWI	GCNNNNNNNGC	1 cut(s)	595
BstNI	CCWGG	1 cut(s)	1221
BstSCI	CCNGG	1 cut(s)	1219
BstSFI	CTRYAG	2 cut(s)	78, 1137
BstSLI	GKGCMC	2 cut(s)	422, 562
BstUI	CGCG	1 cut(s)	963
BstX2I	RGATCY	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	383
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	823, 1102
BtsCI	GGATG	1 cut(s)	794
BtsI	GCAGTG	1 cut(s)	1050
BtsIMutI	CAGTG	4 cut(s)	560, 680, 999, 1050
BveI	ACCTGC	1 cut(s)	500
Cac8I	GCNNGC	3 cut(s)	665, 940, 1079
CaiI	CAGNNNCTG	1 cut(s)	722
CciI	TCATGA	4 cut(s)	102, 412, 867, 1008
Cfr13I	GGNCC	1 cut(s)	1100
Csp6I	GTAC	3 cut(s)	40, 792, 957
CviAII	CATG	8 cut(s)	103, 143, 188, 413, 868, 881, 1009, 1189
CviQI	GTAC	3 cut(s)	40, 792, 957
DdeI	CTNAG	5 cut(s)	195, 247, 300, 579, 1146
DpnI	GATC	2 cut(s)	252, 385
DpnII	GATC	2 cut(s)	250, 383
Eco31I	GGTCTC	2 cut(s)	466, 1006
Eco32I	GATATC	1 cut(s)	182
Eco57I	CTGAAG	2 cut(s)	699, 750
Eco88I	CYCGRG	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	871
EcoRII	CCWGG	1 cut(s)	1219
EcoRV	GATATC	1 cut(s)	182
EcoT22I	ATGCAT	2 cut(s)	733, 1255
FaeI	CATG	8 cut(s)	106, 146, 191, 416, 871, 884, 1012, 1192
FaqI	GGGAC	2 cut(s)	913, 1199
FatI	CATG	8 cut(s)	102, 142, 187, 412, 867, 880, 1008, 1188
FauI	CCCGC	2 cut(s)	304, 364
FauNDI	CATATG	1 cut(s)	568
FokI	GGATG	1 cut(s)	781
FspBI	CTAG	4 cut(s)	876, 1035, 1062, 1104
GsuI	CTGGAG	1 cut(s)	1242
HaeIII	GGCC	2 cut(s)	823, 1102
Hin1II	CATG	8 cut(s)	106, 146, 191, 416, 871, 884, 1012, 1192
HinfI	GANTC	5 cut(s)	46, 193, 343, 431, 742
HphI	GGTGA	2 cut(s)	44, 545
Hpy166II	GTNNAC	4 cut(s)	420, 932, 959, 1127
Hpy188I	TCNGA	5 cut(s)	69, 250, 388, 1096, 1263
Hpy188III	TCNNGA	7 cut(s)	103, 413, 428, 507, 868, 1009, 1232
Hpy8I	GTNNAC	4 cut(s)	420, 932, 959, 1127
HpyAV	CCTTC	2 cut(s)	381, 774
HpyCH4III	ACNGT	2 cut(s)	694, 956
HpyCH4IV	ACGT	2 cut(s)	804, 924
HpyCH4V	TGCA	9 cut(s)	420, 438, 725, 731, 739, 830, 920, 1139, 1253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	595
HpyF3I	CTNAG	5 cut(s)	195, 247, 300, 579, 1146
HpySE526I	ACGT	2 cut(s)	804, 924
Hsp92II	CATG	8 cut(s)	106, 146, 191, 416, 871, 884, 1012, 1192
Kzo9I	GATC	2 cut(s)	250, 383
LmnI	GCTCC	1 cut(s)	763
LweI	GCATC	2 cut(s)	565, 1240
MaeI	CTAG	4 cut(s)	876, 1035, 1062, 1104
MaeII	ACGT	2 cut(s)	804, 924
MaeIII	GTNAC	6 cut(s)	50, 190, 500, 542, 1132, 1149
MalI	GATC	2 cut(s)	252, 385
MboI	GATC	2 cut(s)	250, 383
MboII	GAAGA	7 cut(s)	176, 467, 560, 650, 1186, 1247, 1250
MfeI	CAATTG	1 cut(s)	360
MflI	RGATCY	1 cut(s)	383
MhlI	GDGCHC	3 cut(s)	422, 562, 760
MluCI	AATT	7 cut(s)	360, 447, 511, 551, 606, 871, 1055
MlyI	GAGTC	4 cut(s)	187, 337, 440, 736
Mph1103I	ATGCAT	2 cut(s)	733, 1255
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	2 cut(s)	450, 630
MspA1I	CMGCKG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	1221
MunI	CAATTG	1 cut(s)	360
Mva1269I	GAATGC	1 cut(s)	731
MvaI	CCWGG	1 cut(s)	1221
MvnI	CGCG	1 cut(s)	963
MwoI	GCNNNNNNNGC	1 cut(s)	595
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	2 cut(s)	250, 383
NlaIII	CATG	8 cut(s)	106, 146, 191, 416, 871, 884, 1012, 1192
NlaIV	GGNNCC	1 cut(s)	1230
NmeAIII	GCCGAG	1 cut(s)	882
NmuCI	GTSAC	4 cut(s)	50, 190, 500, 1149
NsiI	ATGCAT	2 cut(s)	733, 1255
NspV	TTCGAA	1 cut(s)	330
PagI	TCATGA	4 cut(s)	102, 412, 867, 1008
PcsI	WCGNNNNNNNCGW	1 cut(s)	667
PctI	GAATGC	1 cut(s)	731
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	1 cut(s)	46
PleI	GAGTC	4 cut(s)	187, 337, 439, 736
PpsI	GAGTC	4 cut(s)	187, 337, 439, 736
PshBI	ATTAAT	1 cut(s)	450
Psp1406I	AACGTT	1 cut(s)	924
Psp6I	CCWGG	1 cut(s)	1219
PspGI	CCWGG	1 cut(s)	1219
PspN4I	GGNNCC	1 cut(s)	1230
PspPI	GGNCC	1 cut(s)	1100
PstI	CTGCAG	1 cut(s)	1141
PstNI	CAGNNNCTG	1 cut(s)	722
PsuI	RGATCY	1 cut(s)	383
PvuII	CAGCTG	1 cut(s)	156
RsaI	GTAC	3 cut(s)	41, 793, 958
RsaNI	GTAC	3 cut(s)	40, 792, 957
SaqAI	TTAA	2 cut(s)	450, 630
Sau3AI	GATC	2 cut(s)	250, 383
Sau96I	GGNCC	1 cut(s)	1100
SchI	GAGTC	4 cut(s)	187, 337, 440, 736
ScrFI	CCNGG	1 cut(s)	1221
SduI	GDGCHC	3 cut(s)	422, 562, 760
SfaNI	GCATC	2 cut(s)	565, 1240
SfcI	CTRYAG	2 cut(s)	78, 1137
SfuI	TTCGAA	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	505
SmoI	CTYRAG	1 cut(s)	505
Sse9I	AATT	7 cut(s)	360, 447, 511, 551, 606, 871, 1055
SsiI	CCGC	4 cut(s)	311, 357, 963, 1244
SspI	AATATT	1 cut(s)	910
SspMI	CTAG	4 cut(s)	876, 1035, 1062, 1104
StyD4I	CCNGG	1 cut(s)	1219
TaaI	ACNGT	2 cut(s)	694, 956
TaiI	ACGT	2 cut(s)	807, 927
TaqI	TCGA	2 cut(s)	330, 773
TasI	AATT	7 cut(s)	360, 447, 511, 551, 606, 871, 1055
TatI	WGTACW	1 cut(s)	956
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	2 cut(s)	450, 630
Tru9I	TTAA	2 cut(s)	450, 630
TscAI	CASTG	4 cut(s)	567, 687, 1006, 1050
TseFI	GTSAC	4 cut(s)	50, 190, 500, 1149
Tsp45I	GTSAC	4 cut(s)	50, 190, 500, 1149
TspDTI	ATGAA	6 cut(s)	91, 176, 363, 468, 856, 884
TspGWI	ACGGA	1 cut(s)	394
TspRI	CASTG	4 cut(s)	567, 687, 1006, 1050
VneI	GTGCAC	1 cut(s)	418
VspI	ATTAAT	1 cut(s)	450
XapI	RAATTY	2 cut(s)	511, 871
XcmI	CCANNNNNNNNNTGG	1 cut(s)	887
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	4 cut(s)	876, 1035, 1062, 1104
Zsp2I	ATGCAT	2 cut(s)	733, 1255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.