Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010103

Physical Location & Seq

Genomic Coordinates Forward (+)

153869 .. 158438

Gene Structure 4570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00131.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGCCTGTGAAGAGAGAACCGTGCAGATACTTTCAGCGTGGCAGCTGTCAGTATGGAGATAAGTGTAGGTATCTTCATGTGATTCAGCAACAGCCAAAGTCGAATATCTTTGGTGGAATCGGCTCGCAATTTGGCTCAGATCAGCCCCAAAAGTCAAATCCTTTTGGTTTCGGTGTTCATAACAACTCTCAATCAAAAGTGGGAGCTGATAAGCCTTTCGAGAATAAATGGACTCGTTCCTCCCCCACAACTGCTACTGCTACTCCTTCATCACGGAGATCTGATAACCAGCCCCAGACAACAAATCATGAGTGCACAAATCCTGAGTCTTGCAGAAGTATCATTATTGAAGATTTTGAGCGTGAGAGACCACTTTGGAAACTTACCTGCTATGGTCACTCAAGAAATTCTCCTTGTGATATTGTTGGTGATATTAGTTACGAAGAATTGAGGGCAGCGGCATATGATGATGCTAAGCGAGGGTTGAACTTACCATCAATTGTTGAAAGAGAACGGAATTTGGTTAATGCCAAGTCGATTGAGTTTGATAACCTTTGCAAGCCCCGTGCTGTTCCACTGAACTCTACCGCTAGCCAAAGCCCTTTCACTTCAGCTACTGCAAATGCACTCTTTCAGACTCCTCAAAGTAGTGCTCCTCCTTCAGTATCAAGTTTCAGCCAGTTAGGTACATCCCTCAACGCGGGATTTGGACAAAGGCCATCTGCACCAGCAAATAATGGTTTTTTGCAGCCGAGCCTGTTTCCGAATTCTAGCCATGCTTCAAGTGGATTTGGAACAAACAGTTTTCCATCTGCAAACGTTGGTTCACTTGCCAGCCAATTTCATAACAGTACTCACGGAAGTACTTTTACCCACAATGTAGGATTTGGCCACCAAATATCCAGTTCAGCAGTGCCATCACAATTTCCCAGTGCTACAAGTAGCCAGCCACTTTCAGATGGGCCTAGCTCTGCTTTTAATCCAATTGGACAAGTAACTGCAGAAGTTCAGTCACCGAATAACGTACAACAGGAGAAGGTTTCTGGAGACACGAGTATTTGGTTGAAAAAGAAATGGACACCAGGAGAGGTTCCAGAAGAAGAACCGCCAGATGCATTGGTTTGGATTGACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0012505 GO:0023051 GO:0023057 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:1900457 GO:1900458 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

379

Amino Acids

40.99

Weight (kDa)

7.1

Isoelectric Point (pI)

65.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	4 - 27	2.6e-09	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4	PF18044	7 - 26	1.5e-08	CCCH-type zinc finger
zf_CCCH_4	PF18345	8 - 26	1.5e-07	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75340 AT1G75340 AT1G75340
fragaria_vesca	FvH4_4g00131
malus_domestica	MD04G1000600.v1.1
prunus_persica	Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1 Prupe.1G000600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0384751
rosa_laevigata	RLG00000010275
rosa_multiflora	Rmu_sc0001322.1_g000021
rosa_roxburghii	Rroxscaffold_5G00332810
rosa_rugosa	Rorug03G0297500
rosa_samantha	Rh4AG000900 Rh4BG000800 Rh4CG000700 Rh4DG000800
rosa_wichuraiana	Rw0G021990 Rw4G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	395
AccII	CGCG	1 cut(s)	701
AciI	CCGC	4 cut(s)	458, 588, 701, 1106
AclI	AACGTT	1 cut(s)	819
AcoI	YGGCCR	1 cut(s)	889
AcsI	RAATTY	3 cut(s)	406, 517, 766
AcuI	CTGAAG	2 cut(s)	594, 645
AfaI	GTAC	4 cut(s)	688, 853, 865, 1026
AfiI	CCNNNNNNNGG	1 cut(s)	700
AgsI	TTSAA	5 cut(s)	350, 487, 506, 783, 1066
AjnI	CCWGG	1 cut(s)	1081
AluBI	AGCT	4 cut(s)	45, 206, 614, 969
AluI	AGCT	4 cut(s)	45, 206, 614, 969
Alw21I	GWGCWC	2 cut(s)	317, 655
Alw26I	GTCTC	2 cut(s)	361, 1041
Alw44I	GTGCAC	1 cut(s)	313
AlwNI	CAGNNNCTG	1 cut(s)	617
AoxI	GGCC	3 cut(s)	716, 889, 962
ApaLI	GTGCAC	1 cut(s)	313
ApeKI	GCWGC	3 cut(s)	42, 455, 748
ApoI	RAATTY	3 cut(s)	406, 517, 766
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AspS9I	GGNCC	1 cut(s)	962
AsuHPI	GGTGA	2 cut(s)	440, 1005
AsuNHI	GCTAGC	1 cut(s)	590
BaeGI	GKGCMC	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	891
BarI	GAAGNNNNNNTAC	2 cut(s)	853, 885
BauI	CACGAG	1 cut(s)	1051
Bbv12I	GWGCWC	2 cut(s)	317, 655
BbvI	GCAGC	3 cut(s)	54, 467, 760
BccI	CCATC	5 cut(s)	502, 727, 817, 925, 953
BciT130I	CCWGG	1 cut(s)	1083
BcoDI	GTCTC	2 cut(s)	361, 1041
BfaI	CTAG	3 cut(s)	591, 771, 966
BfmI	CTRYAG	1 cut(s)	999
BfuAI	ACCTGC	1 cut(s)	395
BglII	AGATCT	1 cut(s)	278
BisI	GCNGC	4 cut(s)	43, 456, 459, 749
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	4 cut(s)	44, 457, 460, 750
BmcAI	AGTACT	2 cut(s)	853, 865
Bme1390I	CCNGG	1 cut(s)	1083
BmgT120I	GGNCC	1 cut(s)	962
BmiI	GGNNCC	1 cut(s)	1092
BmrFI	CCNGG	1 cut(s)	1083
BmrI	ACTGGG	1 cut(s)	924
BmsI	GCATC	2 cut(s)	460, 1102
BmtI	GCTAGC	1 cut(s)	594
BmuI	ACTGGG	1 cut(s)	924
BpmI	CTGGAG	1 cut(s)	1065
Bpu1102I	GCTNAGC	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	385
BsaI	GGTCTC	1 cut(s)	361
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	700
Bse1I	ACTGG	3 cut(s)	679, 903, 930
BseBI	CCWGG	1 cut(s)	1083
BseGI	GGATG	1 cut(s)	689
BseLI	CCNNNNNNNGG	1 cut(s)	700
BseMII	CTCAG	2 cut(s)	150, 315
BseNI	ACTGG	3 cut(s)	679, 903, 930
BseRI	GAGGAG	2 cut(s)	630, 645
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	3 cut(s)	54, 467, 760
BsgI	GTGCAG	2 cut(s)	43, 708
Bsh1236I	CGCG	1 cut(s)	701
BshFI	GGCC	3 cut(s)	718, 891, 964
BsiHKAI	GWGCWC	2 cut(s)	317, 655
BslI	CCNNNNNNNGG	1 cut(s)	700
BsmAI	GTCTC	2 cut(s)	361, 1041
BsnI	GGCC	3 cut(s)	718, 891, 964
Bso31I	GGTCTC	1 cut(s)	361
Bsp1286I	GDGCHC	2 cut(s)	317, 655
Bsp143I	GATC	2 cut(s)	139, 278
Bsp1720I	GCTNAGC	1 cut(s)	474
BspACI	CCGC	4 cut(s)	458, 588, 701, 1106
BspANI	GGCC	3 cut(s)	718, 891, 964
BspCNI	CTCAG	2 cut(s)	149, 316
BspFNI	CGCG	1 cut(s)	701
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	1092
BspMAI	CTGCAG	1 cut(s)	1003
BspMI	ACCTGC	1 cut(s)	395
BspOI	GCTAGC	1 cut(s)	594
BspTNI	GGTCTC	1 cut(s)	361
BsrI	ACTGG	3 cut(s)	679, 903, 930
BssMI	GATC	2 cut(s)	139, 278
BssSI	CACGAG	1 cut(s)	1051
Bst2BI	CACGAG	1 cut(s)	1051
Bst2UI	CCWGG	1 cut(s)	1083
Bst4CI	ACNGT	3 cut(s)	21, 803, 851
Bst6I	CTCTTC	1 cut(s)	5
BstC8I	GCNNGC	5 cut(s)	125, 560, 592, 835, 947
BstDEI	CTNAG	3 cut(s)	136, 324, 474
BstF5I	GGATG	1 cut(s)	689
BstFNI	CGCG	1 cut(s)	701
BstKTI	GATC	2 cut(s)	142, 281
BstMAI	GTCTC	2 cut(s)	361, 1041
BstMBI	GATC	2 cut(s)	139, 278
BstNI	CCWGG	1 cut(s)	1083
BstSCI	CCNGG	1 cut(s)	1081
BstSFI	CTRYAG	1 cut(s)	999
BstSLI	GKGCMC	1 cut(s)	317
BstUI	CGCG	1 cut(s)	701
BstV1I	GCAGC	3 cut(s)	54, 467, 760
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BsuRI	GGCC	3 cut(s)	718, 891, 964
BtsCI	GGATG	1 cut(s)	689
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	3 cut(s)	575, 918, 937
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	5 cut(s)	125, 560, 592, 835, 947
CaiI	CAGNNNCTG	1 cut(s)	617
CciI	TCATGA	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	962
Csp6I	GTAC	4 cut(s)	687, 852, 864, 1025
CviAII	CATG	3 cut(s)	77, 308, 776
CviQI	GTAC	4 cut(s)	687, 852, 864, 1025
DdeI	CTNAG	3 cut(s)	136, 324, 474
DpnI	GATC	2 cut(s)	141, 280
DpnII	GATC	2 cut(s)	139, 278
EaeI	YGGCCR	1 cut(s)	889
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco31I	GGTCTC	1 cut(s)	361
Eco57I	CTGAAG	2 cut(s)	594, 645
EcoRI	GAATTC	1 cut(s)	766
EcoRII	CCWGG	1 cut(s)	1081
EcoT22I	ATGCAT	1 cut(s)	1117
FaeI	CATG	3 cut(s)	80, 311, 779
FaiI	YATR	9 cut(s)	54, 78, 180, 309, 393, 463, 465, 777, 846
FatI	CATG	3 cut(s)	76, 307, 775
FauI	CCCGC	1 cut(s)	694
FauNDI	CATATG	1 cut(s)	463
Fnu4HI	GCNGC	4 cut(s)	43, 456, 459, 749
FokI	GGATG	1 cut(s)	676
Fsp4HI	GCNGC	4 cut(s)	43, 456, 459, 749
FspBI	CTAG	3 cut(s)	591, 771, 966
GluI	GCNGC	4 cut(s)	43, 456, 459, 749
GsuI	CTGGAG	1 cut(s)	1065
HaeIII	GGCC	3 cut(s)	718, 891, 964
Hin1II	CATG	3 cut(s)	80, 311, 779
HinfI	GANTC	5 cut(s)	82, 117, 232, 326, 637
HphI	GGTGA	2 cut(s)	440, 1005
Hpy166II	GTNNAC	2 cut(s)	315, 827
Hpy188I	TCNGA	5 cut(s)	139, 283, 636, 765, 958
Hpy188III	TCNNGA	6 cut(s)	220, 308, 323, 402, 1044, 1094
Hpy8I	GTNNAC	2 cut(s)	315, 827
HpyAV	CCTTC	3 cut(s)	276, 669, 1030
HpyCH4III	ACNGT	3 cut(s)	21, 803, 851
HpyCH4IV	ACGT	2 cut(s)	819, 1023
HpyF3I	CTNAG	3 cut(s)	136, 324, 474
HpySE526I	ACGT	2 cut(s)	819, 1023
Hsp92II	CATG	3 cut(s)	80, 311, 779
Kzo9I	GATC	2 cut(s)	139, 278
LmnI	GCTCC	2 cut(s)	203, 658
Lsp1109I	GCAGC	3 cut(s)	54, 467, 760
LweI	GCATC	2 cut(s)	460, 1102
MaeI	CTAG	3 cut(s)	591, 771, 966
MaeII	ACGT	2 cut(s)	819, 1023
MaeIII	GTNAC	4 cut(s)	395, 437, 994, 1011
MalI	GATC	2 cut(s)	141, 280
MboI	GATC	2 cut(s)	139, 278
MboII	GAAGA	6 cut(s)	22, 65, 362, 455, 1109, 1112
MfeI	CAATTG	2 cut(s)	498, 984
MflI	RGATCY	1 cut(s)	278
MhlI	GDGCHC	2 cut(s)	317, 655
MlsI	TGGCCA	1 cut(s)	891
MluCI	AATT	9 cut(s)	128, 406, 446, 498, 517, 766, 839, 923, 984
MluNI	TGGCCA	1 cut(s)	891
MlyI	GAGTC	3 cut(s)	226, 335, 631
MnlI	CCTC	7 cut(s)	250, 444, 473, 651, 666, 704, 1081
Mox20I	TGGCCA	1 cut(s)	891
Mph1103I	ATGCAT	1 cut(s)	1117
MscI	TGGCCA	1 cut(s)	891
MseI	TTAA	2 cut(s)	525, 978
Msp20I	TGGCCA	1 cut(s)	891
MspA1I	CMGCKG	2 cut(s)	45, 458
MspR9I	CCNGG	1 cut(s)	1083
MunI	CAATTG	2 cut(s)	498, 984
MvaI	CCWGG	1 cut(s)	1083
MvnI	CGCG	1 cut(s)	701
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	2 cut(s)	139, 278
NheI	GCTAGC	1 cut(s)	590
NlaIII	CATG	3 cut(s)	80, 311, 779
NlaIV	GGNNCC	1 cut(s)	1092
NmeAIII	GCCGAG	1 cut(s)	777
NmuCI	GTSAC	2 cut(s)	395, 1011
NsiI	ATGCAT	1 cut(s)	1117
PagI	TCATGA	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	82, 117
PkrI	GCNGC	4 cut(s)	44, 457, 460, 750
PleI	GAGTC	3 cut(s)	226, 334, 631
PpsI	GAGTC	3 cut(s)	226, 334, 631
Psp1406I	AACGTT	1 cut(s)	819
Psp6I	CCWGG	1 cut(s)	1081
PspGI	CCWGG	1 cut(s)	1081
PspN4I	GGNNCC	1 cut(s)	1092
PspPI	GGNCC	1 cut(s)	962
PstI	CTGCAG	1 cut(s)	1003
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	45
RsaI	GTAC	4 cut(s)	688, 853, 865, 1026
RsaNI	GTAC	4 cut(s)	687, 852, 864, 1025
SaqAI	TTAA	2 cut(s)	525, 978
SatI	GCNGC	4 cut(s)	43, 456, 459, 749
Sau3AI	GATC	2 cut(s)	139, 278
Sau96I	GGNCC	1 cut(s)	962
ScaI	AGTACT	2 cut(s)	853, 865
SchI	GAGTC	3 cut(s)	226, 335, 631
ScrFI	CCNGG	1 cut(s)	1083
SduI	GDGCHC	2 cut(s)	317, 655
SfaNI	GCATC	2 cut(s)	460, 1102
SfcI	CTRYAG	1 cut(s)	999
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
Sse9I	AATT	9 cut(s)	128, 406, 446, 498, 517, 766, 839, 923, 984
SsiI	CCGC	4 cut(s)	458, 588, 701, 1106
SspMI	CTAG	3 cut(s)	591, 771, 966
StyD4I	CCNGG	1 cut(s)	1081
TaaI	ACNGT	3 cut(s)	21, 803, 851
TaiI	ACGT	2 cut(s)	822, 1026
TaqI	TCGA	3 cut(s)	101, 219, 536
TasI	AATT	9 cut(s)	128, 406, 446, 498, 517, 766, 839, 923, 984
TatI	WGTACW	2 cut(s)	851, 863
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	2 cut(s)	82, 117
Tru1I	TTAA	2 cut(s)	525, 978
Tru9I	TTAA	2 cut(s)	525, 978
TscAI	CASTG	3 cut(s)	582, 918, 937
TseFI	GTSAC	2 cut(s)	395, 1011
TseI	GCWGC	3 cut(s)	42, 455, 748
Tsp45I	GTSAC	2 cut(s)	395, 1011
TspDTI	ATGAA	4 cut(s)	65, 167, 258, 833
TspGWI	ACGGA	3 cut(s)	289, 529, 873
TspRI	CASTG	3 cut(s)	582, 918, 937
VneI	GTGCAC	1 cut(s)	313
XapI	RAATTY	3 cut(s)	406, 517, 766
XcmI	CCANNNNNNNNNTGG	1 cut(s)	782
XspI	CTAG	3 cut(s)	591, 771, 966
ZrmI	AGTACT	2 cut(s)	853, 865
Zsp2I	ATGCAT	1 cut(s)	1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.