AT1G75350

Belongs to the bacterial ribosomal protein bL31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012462
Physical Location & Seq
Forward (+)
28272071 .. 28273009
939 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G75350.1

Sequence Viewer

Length: 435 bp
ATGGCGGTTTCTCTCCCGAACTCGTTTCTTCAGATTAGCCCATGTGTTCCTTCTCTGCAATTAAGAAAGCCGGTGATGGCGGCAGTGAAAGGAGGAAAACAATCGGTGAGAAGAAGCAGCAATACGGTGGTTCAGATAACGTGTCGTAAGAAGGAATTGCATCCTGAATTCCACGAAGACGCAAAGGTTTACTGCAATGGAGAGCTGGTGATGACTACAGGAGGAACAAAGAAAGAGTATGTGGTTGATGTATGGTCAGGTAACCATCCGTTTTACCTCGGGAATCGTTCGGCTTTGATGGTTGATGCTGATCAAGTTGAGAAGTTTCGTAAGAGGTTCGCTGGGCTTTCTGAGATTATGGAGATTCCTGTGCTTAAAGGAGAAATCATTATGCCTACTAAGAAAAGTAAAGGTCCCAAAGGGAAGAAGAAATGA

Protein Analysis

144

Amino Acids

16.03

Weight (kDa)

9.82

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L31 PF01197 50 - 114 5.2e-17 Ribosomal protein L31
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75350
fragaria_vesca FvH4_2g39490 FvH4_2g39490
malus_domestica MD08G1027600.v1.1 MD15G1023800.v1.1
prunus_persica Prupe.1G376100_v2.0.a1
pyrus_communis pycom08g02160 pycom15g02040
rosa_chinensis RchiOBHm_Chr6g0301461
rosa_laevigata RLG00000011251
rosa_multiflora Rmu_co8470853.1_g000001 Rmu_sc0014417.1_g000013
rosa_roxburghii Rroxscaffold_7G00166780
rosa_rugosa Rorug06G0305000
rosa_samantha Rh6AG418600 Rh6BG424800 Rh6CG432100 Rh6DG418100
rosa_wichuraiana Rw6G036220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 80
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 14
AflIII ACRYGT 1 cut(s) 140
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Ama87I CYCGRG 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 413
AsuHPI GGTGA 3 cut(s) 85, 118, 220
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 1 cut(s) 413
BarI GAAGNNNNNNTAC 2 cut(s) 106, 138
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 129
BccI CCATC 3 cut(s) 70, 273, 292
BclI TGATCA 1 cut(s) 310
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 2 cut(s) 81, 118
BlsI GCNGC 2 cut(s) 82, 119
Bme18I GGWCC 1 cut(s) 413
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 1 cut(s) 415
BmsI GCATC 2 cut(s) 169, 295
BpiI GAAGAC 1 cut(s) 183
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 277
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bse118I RCCGGY 1 cut(s) 70
Bse3DI GCAATG 1 cut(s) 202
Bse8I GATNNNNATC 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 2 cut(s) 160, 265
BseJI GATNNNNATC 1 cut(s) 309
BseMI GCAATG 1 cut(s) 202
BseMII CTCAG 1 cut(s) 342
BseXI GCAGC 1 cut(s) 129
BseYI CCCAGC 1 cut(s) 341
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 1 cut(s) 399
BsmFI GGGAC 1 cut(s) 399
BsoBI CYCGRG 1 cut(s) 278
Bsp143I GATC 1 cut(s) 310
BspACI CCGC 2 cut(s) 5, 80
BspCNI CTCAG 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 415
BsrDI GCAATG 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 70
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 277
BssMI GATC 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 127
BstDEI CTNAG 2 cut(s) 351, 399
BstEII GGTNACC 1 cut(s) 260
BstF5I GGATG 2 cut(s) 160, 265
BstKTI GATC 1 cut(s) 313
BstMBI GATC 1 cut(s) 310
BstPI GGTNACC 1 cut(s) 260
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 129
BstV2I GAAGAC 1 cut(s) 183
BtsCI GGATG 2 cut(s) 160, 265
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 413
CseI GACGC 1 cut(s) 188
CviAII CATG 1 cut(s) 42
CviJI RGCY 5 cut(s) 39, 70, 205, 293, 346
CviKI_1 RGCY 5 cut(s) 39, 70, 205, 293, 346
DdeI CTNAG 2 cut(s) 351, 399
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 14
Eco88I CYCGRG 1 cut(s) 278
Eco91I GGTNACC 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 413
EcoO65I GGTNACC 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 167
FaeI CATG 1 cut(s) 45
FaiI YATR 5 cut(s) 43, 240, 253, 359, 392
FaqI GGGAC 1 cut(s) 399
FatI CATG 1 cut(s) 41
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 2 cut(s) 81, 118
FokI GGATG 2 cut(s) 147, 252
Fsp4HI GCNGC 2 cut(s) 81, 118
GluI GCNGC 2 cut(s) 81, 118
GsaI CCCAGC 1 cut(s) 345
HapII CCGG 1 cut(s) 71
HgaI GACGC 1 cut(s) 188
Hin1II CATG 1 cut(s) 45
HinfI GANTC 2 cut(s) 283, 364
HpaII CCGG 1 cut(s) 71
HphI GGTGA 3 cut(s) 85, 118, 220
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 3 cut(s) 33, 135, 352
Hpy188III TCNNGA 3 cut(s) 16, 164, 280
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 2 cut(s) 60, 145
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 3 cut(s) 58, 160, 195
HpyF3I CTNAG 2 cut(s) 351, 399
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 1 cut(s) 310
LpnPI CCDG 7 cut(s) 84, 177, 191, 204, 243, 327, 381
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 2 cut(s) 169, 295
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 260
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 3 cut(s) 20, 123, 188
MluCI AATT 3 cut(s) 59, 155, 167
MnlI CCTC 4 cut(s) 86, 215, 287, 327
MseI TTAA 2 cut(s) 62, 375
MspI CCGG 1 cut(s) 71
NdeII GATC 1 cut(s) 310
NlaIII CATG 1 cut(s) 45
NlaIV GGNNCC 1 cut(s) 415
PfeI GAWTC 2 cut(s) 283, 364
PkrI GCNGC 2 cut(s) 82, 119
PpuMI RGGWCCY 1 cut(s) 413
Psp5II RGGWCCY 1 cut(s) 413
PspEI GGTNACC 1 cut(s) 260
PspFI CCCAGC 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 415
PspPI GGNCC 1 cut(s) 413
PspPPI RGGWCCY 1 cut(s) 413
SaqAI TTAA 2 cut(s) 62, 375
SatI GCNGC 2 cut(s) 81, 118
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 1 cut(s) 413
SetI ASST 7 cut(s) 143, 189, 207, 262, 279, 338, 415
SfaNI GCATC 2 cut(s) 169, 295
SfcI CTRYAG 1 cut(s) 216
SinI GGWCC 1 cut(s) 413
Sse9I AATT 3 cut(s) 59, 155, 167
SsiI CCGC 2 cut(s) 5, 80
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 143
TasI AATT 3 cut(s) 59, 155, 167
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 2 cut(s) 283, 364
Tru1I TTAA 2 cut(s) 62, 375
Tru9I TTAA 2 cut(s) 62, 375
TscAI CASTG 1 cut(s) 90
TseI GCWGC 1 cut(s) 117
TspGWI ACGGA 1 cut(s) 258
TspRI CASTG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 413
XapI RAATTY 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.