MD08G1027600.v1.1

Belongs to the bacterial ribosomal protein bL31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0012462
Physical Location & Seq
Reverse (-)
2020456 .. 2021310
855 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1027600.v1.1.491

Sequence Viewer

Length: 420 bp
ATGGCGCTCAATCTAACCACCTCATTCCTCCATGGAACGCCCCGCCCCACGCTGCTCCCTCCCAAGAAGGTCTGCGGTGGCGGTGGGTCGTCGGCGGGGAATCGCCGCTCTGTGGTGACGTGCAGGAAAAAGGAGATACACCCGCAGTTCCACGAGGACGCGAAGGTGTACTGCAAGGGGGAGCTGGTGATGACGACGGGTGGGACCCAGAAGGAGTACGTGGTGGACGTGTGGTCGGGCAACCACCCCTTCTACCTCGGAAACCGGTCGGGCATGCTCGTCGACGACGACCAGGTCGAGAAGTTCAGGAAGAAGTACGGCGAGCTCACCCAGATCATGGAGATTCCTGTCCTCAAGGGAGAGATTGTTCTGCCCTCCCGCCGCAAGGCCGCCGCCGGTAAAGGCGGCAAGAAGAAGTAG

Protein Analysis

140

Amino Acids

15.29

Weight (kDa)

9.77

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L31 PF01197 43 - 107 4.3e-17 Ribosomal protein L31
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75350
fragaria_vesca FvH4_2g39490 FvH4_2g39490
malus_domestica MD08G1027600.v1.1 MD15G1023800.v1.1
prunus_persica Prupe.1G376100_v2.0.a1
pyrus_communis pycom08g02160 pycom15g02040
rosa_chinensis RchiOBHm_Chr6g0301461
rosa_laevigata RLG00000011251
rosa_multiflora Rmu_co8470853.1_g000001 Rmu_sc0014417.1_g000013
rosa_roxburghii Rroxscaffold_7G00166780
rosa_rugosa Rorug06G0305000
rosa_samantha Rh6AG418600 Rh6BG424800 Rh6CG432100 Rh6DG418100
rosa_wichuraiana Rw6G036220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 293
AccB7I CCANNNNNTGG 1 cut(s) 337
AccBSI CCGCTC 1 cut(s) 108
AccI GTMKAC 1 cut(s) 282
AccII CGCG 1 cut(s) 161
AfaI GTAC 3 cut(s) 170, 218, 317
AfiI CCNNNNNNNGG 3 cut(s) 112, 337, 385
AflIII ACRYGT 1 cut(s) 228
AgeI ACCGGT 1 cut(s) 264
AhdI GACNNNNNGTC 1 cut(s) 232
AjiI CACGTC 2 cut(s) 120, 229
AjnI CCWGG 1 cut(s) 291
AloI GAACNNNNNNTCC 2 cut(s) 351, 383
AluBI AGCT 2 cut(s) 184, 325
AluI AGCT 2 cut(s) 184, 325
Alw21I GWGCWC 1 cut(s) 327
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 52
AsiGI ACCGGT 1 cut(s) 264
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 204
AsuHPI GGTGA 3 cut(s) 127, 199, 319
AvaII GGWCC 1 cut(s) 204
BanII GRGCYC 1 cut(s) 327
BauI CACGAG 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 327
BbvI GCAGC 1 cut(s) 39
BceAI ACGGC 1 cut(s) 334
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 1 cut(s) 293
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 6 cut(s) 53, 106, 382, 390, 393, 406
BlsI GCNGC 6 cut(s) 54, 107, 383, 391, 394, 407
Bme1390I CCNGG 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 204
BmeRI GACNNNNNGTC 1 cut(s) 232
BmgBI CACGTC 2 cut(s) 120, 229
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 2 cut(s) 205, 206
BmrFI CCNGG 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 338
BsaAI YACGTR 1 cut(s) 220
BsaJI CCNNGG 2 cut(s) 31, 256
BsaWI WCCGGW 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 337, 385
Bse118I RCCGGY 2 cut(s) 264, 395
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 2 cut(s) 31, 256
BseLI CCNNNNNNNGG 3 cut(s) 112, 337, 385
BseXI GCAGC 1 cut(s) 39
BsgI GTGCAG 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 161
Bsh1285I CGRYCG 1 cut(s) 269
BshFI GGCC 1 cut(s) 389
BshTI ACCGGT 1 cut(s) 264
BsiEI CGRYCG 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 327
BsiSI CCGG 2 cut(s) 265, 396
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 3 cut(s) 112, 337, 385
BsmFI GGGAC 1 cut(s) 217
BsnI GGCC 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 1 cut(s) 333
Bsp19I CCATGG 1 cut(s) 31
BspANI GGCC 1 cut(s) 389
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 2 cut(s) 205, 206
BsrBI CCGCTC 1 cut(s) 108
BsrFI RCCGGY 2 cut(s) 264, 395
BssAI RCCGGY 2 cut(s) 264, 395
BssECI CCNNGG 2 cut(s) 31, 256
BssMI GATC 1 cut(s) 333
BssSI CACGAG 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 31
Bst2BI CACGAG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 293
BstBAI YACGTR 1 cut(s) 220
BstC8I GCNNGC 2 cut(s) 275, 323
BstDSI CCRYGG 1 cut(s) 31
BstFNI CGCG 1 cut(s) 161
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 336
BstMBI GATC 1 cut(s) 333
BstMCI CGRYCG 1 cut(s) 269
BstNI CCWGG 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 291
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 39
BsuRI GGCC 1 cut(s) 389
BtgI CCRYGG 1 cut(s) 31
BtrI CACGTC 2 cut(s) 120, 229
Cac8I GCNNGC 2 cut(s) 275, 323
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 264, 395
Cfr13I GGNCC 1 cut(s) 204
CseI GACGC 1 cut(s) 167
CsiI ACCWGGT 1 cut(s) 291
Csp6I GTAC 3 cut(s) 169, 217, 316
CspAI ACCGGT 1 cut(s) 264
CviAII CATG 3 cut(s) 32, 274, 337
CviJI RGCY 3 cut(s) 184, 325, 389
CviKI_1 RGCY 3 cut(s) 184, 325, 389
CviQI GTAC 3 cut(s) 169, 217, 316
DpnI GATC 1 cut(s) 335
DpnII GATC 1 cut(s) 333
DrdI GACNNNNNNGTC 1 cut(s) 293
DriI GACNNNNNGTC 1 cut(s) 232
DseDI GACNNNNNNGTC 1 cut(s) 293
Eam1105I GACNNNNNGTC 1 cut(s) 232
Ecl136II GAGCTC 1 cut(s) 325
Eco130I CCWWGG 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 325
EcoICRI GAGCTC 1 cut(s) 325
EcoO109I RGGNCCY 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 291
EcoT14I CCWWGG 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 3 cut(s) 35, 277, 340
FaiI YATR 3 cut(s) 33, 275, 338
FaqI GGGAC 1 cut(s) 217
FatI CATG 3 cut(s) 31, 273, 336
FauI CCCGC 4 cut(s) 50, 88, 150, 386
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 6 cut(s) 53, 106, 382, 390, 393, 406
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 6 cut(s) 53, 106, 382, 390, 393, 406
GlaI GCGC 1 cut(s) 6
GluI GCNGC 6 cut(s) 53, 106, 382, 390, 393, 406
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 389
HapII CCGG 2 cut(s) 265, 396
HgaI GACGC 1 cut(s) 167
HhaI GCGC 1 cut(s) 7
Hin1II CATG 3 cut(s) 35, 277, 340
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 2 cut(s) 100, 343
HpaII CCGG 2 cut(s) 265, 396
HphI GGTGA 3 cut(s) 127, 199, 319
Hpy166II GTNNAC 3 cut(s) 169, 226, 283
Hpy188I TCNGA 1 cut(s) 260
Hpy188III TCNNGA 2 cut(s) 298, 307
Hpy8I GTNNAC 3 cut(s) 169, 226, 283
Hpy99I CGWCG 5 cut(s) 94, 199, 284, 287, 290
HpyAV CCTTC 4 cut(s) 61, 157, 205, 259
HpyCH4IV ACGT 3 cut(s) 119, 219, 228
HpyCH4V TGCA 2 cut(s) 123, 174
HpySE526I ACGT 3 cut(s) 119, 219, 228
Hsp92II CATG 3 cut(s) 35, 277, 340
HspAI GCGC 1 cut(s) 5
KflI GGGWCCC 1 cut(s) 204
Kzo9I GATC 1 cut(s) 333
LmnI GCTCC 2 cut(s) 60, 181
Lsp1109I GCAGC 1 cut(s) 39
MabI ACCWGGT 1 cut(s) 291
MaeII ACGT 3 cut(s) 119, 219, 228
MaeIII GTNAC 1 cut(s) 115
MalI GATC 1 cut(s) 335
MbiI CCGCTC 1 cut(s) 108
MboI GATC 1 cut(s) 333
MboII GAAGA 1 cut(s) 322
MhlI GDGCHC 1 cut(s) 327
MnlI CCTC 7 cut(s) 31, 38, 69, 148, 266, 362, 385
MspI CCGG 2 cut(s) 265, 396
MspR9I CCNGG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 293
MvnI CGCG 1 cut(s) 161
NcoI CCATGG 1 cut(s) 31
NdeII GATC 1 cut(s) 333
NlaIII CATG 3 cut(s) 35, 277, 340
NlaIV GGNNCC 2 cut(s) 205, 206
NmuCI GTSAC 1 cut(s) 115
NspI RCATGY 1 cut(s) 277
PaeI GCATGC 1 cut(s) 277
PcsI WCGNNNNNNNCGW 3 cut(s) 225, 285, 294
PfeI GAWTC 2 cut(s) 100, 343
PflFI GACNNNGTC 1 cut(s) 293
PflMI CCANNNNNTGG 1 cut(s) 337
PinAI ACCGGT 1 cut(s) 264
PkrI GCNGC 6 cut(s) 54, 107, 383, 391, 394, 407
Ppu21I YACGTR 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 327
Psp5II RGGWCCY 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 2 cut(s) 205, 206
PspPI GGNCC 1 cut(s) 204
PspPPI RGGWCCY 1 cut(s) 204
PsyI GACNNNGTC 1 cut(s) 293
RsaI GTAC 3 cut(s) 170, 218, 317
RsaNI GTAC 3 cut(s) 169, 217, 316
SacI GAGCTC 1 cut(s) 327
SalI GTCGAC 1 cut(s) 281
SatI GCNGC 6 cut(s) 53, 106, 382, 390, 393, 406
Sau3AI GATC 1 cut(s) 333
Sau96I GGNCC 1 cut(s) 204
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 1 cut(s) 327
SexAI ACCWGGT 1 cut(s) 291
SgrDI CGTCGACG 1 cut(s) 281
SinI GGWCC 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SphI GCATGC 1 cut(s) 277
SstI GAGCTC 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 291
StyI CCWWGG 1 cut(s) 31
TaiI ACGT 3 cut(s) 122, 222, 231
TaqI TCGA 2 cut(s) 282, 297
TatI WGTACW 1 cut(s) 168
TauI GCSGC 5 cut(s) 108, 384, 392, 395, 408
TfiI GAWTC 2 cut(s) 100, 343
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 115
Tth111I GACNNNGTC 1 cut(s) 293
Van91I CCANNNNNTGG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 204
XceI RCATGY 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.