Rorug06G0305000

Belongs to the bacterial ribosomal protein bL31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012462
Physical Location & Seq
Reverse (-)
45642853 .. 45645013
2161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0305000.1

Sequence Viewer

Length: 819 bp
ATGGTGAGAGCTCCGTGCTGCGAGAAGATGGGGTTGAAGAAAGGGCCGTGGACGCCGGAGGAGGATCACGTACTCGTCTCTTACATTCAGCAGTACGGCCATGGAAACTGGAGGGCGCTTCCCAAACTGGCAGGGTTGTTGAGGTGTGGGAAGAGTTGCAGGCTGCGGTGGACGAACTACCTGAGGCCGGATATCAAGAGAGGGAATTTTAGCAGGGAGGAAGAAGAGGCCATCATCAACTTGCATCAAATGTTGGGGAATAGATGGTCAGCAATTGCAGCAAGATTGCCGGGTCGCACAGACAATGAAATAAAAAACGTTTGGCACACCCACTTGAAAAAGAAGCTCAGCATCAAGCAGAATTCTACCACACCAGAAGCACAAGGTCAGGAATCCGAACCCGAACCCGAACCTGAAAATACTTCATGTTTTGCAAAATCCGAAAGCTTCGAATATGGGCCGGTTTCCCCACCTCAATGTACTACGAGTGCTGATGACACCTCCTCATTCACCACCAGTGAGAACAATACCTGTAGTGCTAATATGGGCATGAAAGTAGACTACGAAATGAATTTACCCCAAGCGGACGAGAGCTTTTGGTCAGAAGTACTATCAGCTGATCAGAACTGTTCCAACGAGACGGTGAGTTGCGATTTTGATCAGGCAATTGGTGCAGCAGCAGATCCACAAGTGAACGCAACTGTGGAAGTTCCTGTCGATTTTGGGTTTAGTGGCTCAAATATGTACGATAACTGCATGGATTTTTGGTACAACGTTTTCACAACAGCAGGGGAGATTTCAGAATTGCTAGAGATTTGA

Protein Analysis

272

Amino Acids

30.47

Weight (kDa)

4.78

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 6.7e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 76 1.8e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 4.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 117 8e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75350
fragaria_vesca FvH4_2g39490 FvH4_2g39490
malus_domestica MD08G1027600.v1.1 MD15G1023800.v1.1
prunus_persica Prupe.1G376100_v2.0.a1
pyrus_communis pycom08g02160 pycom15g02040
rosa_chinensis RchiOBHm_Chr6g0301461
rosa_laevigata RLG00000011251
rosa_multiflora Rmu_co8470853.1_g000001 Rmu_sc0014417.1_g000013
rosa_roxburghii Rroxscaffold_7G00166780
rosa_rugosa Rorug06G0305000
rosa_samantha Rh6AG418600 Rh6BG424800 Rh6CG432100 Rh6DG418100
rosa_wichuraiana Rw6G036220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 558
AciI CCGC 2 cut(s) 166, 584
AclI AACGTT 2 cut(s) 318, 774
AclWI GGATC 2 cut(s) 72, 677
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 3 cut(s) 205, 361, 571
AcyI GRCGYC 1 cut(s) 53
AfaI GTAC 6 cut(s) 72, 95, 481, 609, 746, 770
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 2 cut(s) 37, 337
AluBI AGCT 5 cut(s) 11, 346, 447, 594, 617
AluI AGCT 5 cut(s) 11, 346, 447, 594, 617
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 82, 632
AlwI GGATC 2 cut(s) 72, 677
AoxI GGCC 5 cut(s) 44, 97, 185, 228, 458
ApeKI GCWGC 5 cut(s) 18, 163, 278, 674, 677
ApoI RAATTY 3 cut(s) 205, 361, 571
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 2 cut(s) 44, 458
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 3 cut(s) 16, 502, 655
AsuII TTCGAA 1 cut(s) 450
AxyI CCTNAGG 1 cut(s) 182
BanII GRGCYC 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 5 cut(s) 5, 150, 290, 686, 689
BccI CCATC 3 cut(s) 22, 239, 258
BceAI ACGGC 2 cut(s) 31, 112
BclI TGATCA 2 cut(s) 619, 658
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 2 cut(s) 82, 632
BfaI CTAG 1 cut(s) 809
BfmI CTRYAG 1 cut(s) 532
BfoI RGCGCY 1 cut(s) 119
BisI GCNGC 5 cut(s) 19, 164, 279, 675, 678
BlpI GCTNAGC 1 cut(s) 347
BlsI GCNGC 5 cut(s) 20, 165, 280, 676, 679
BmcAI AGTACT 1 cut(s) 609
Bme1390I CCNGG 1 cut(s) 291
BmgT120I GGNCC 2 cut(s) 44, 458
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 2 cut(s) 253, 360
BpmI CTGGAG 1 cut(s) 130
Bpu1102I GCTNAGC 1 cut(s) 347
Bpu14I TTCGAA 1 cut(s) 450
BpuMI CCSGG 1 cut(s) 291
BsaAI YACGTR 1 cut(s) 70
BsaBI GATNNNNATC 1 cut(s) 657
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 47, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse118I RCCGGY 1 cut(s) 460
Bse1I ACTGG 3 cut(s) 113, 132, 516
Bse21I CCTNAGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 657
BseDI CCNNGG 2 cut(s) 47, 100
BseJI GATNNNNATC 1 cut(s) 657
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 2 cut(s) 173, 361
BseNI ACTGG 3 cut(s) 113, 132, 516
BseRI GAGGAG 2 cut(s) 74, 493
BseXI GCAGC 5 cut(s) 5, 150, 290, 686, 689
BsgI GTGCAG 1 cut(s) 693
BshFI GGCC 5 cut(s) 46, 99, 187, 230, 460
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 4 cut(s) 56, 188, 290, 461
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 2 cut(s) 82, 632
BsmBI CGTCTC 2 cut(s) 82, 632
BsnI GGCC 5 cut(s) 46, 99, 187, 230, 460
Bsp119I TTCGAA 1 cut(s) 450
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 4 cut(s) 64, 619, 658, 682
Bsp1720I GCTNAGC 1 cut(s) 347
Bsp19I CCATGG 1 cut(s) 100
BspACI CCGC 2 cut(s) 166, 584
BspANI GGCC 5 cut(s) 46, 99, 187, 230, 460
BspCNI CTCAG 2 cut(s) 174, 360
BspPI GGATC 2 cut(s) 72, 677
BspT104I TTCGAA 1 cut(s) 450
BsrFI RCCGGY 1 cut(s) 460
BsrI ACTGG 3 cut(s) 113, 132, 516
BssAI RCCGGY 1 cut(s) 460
BssECI CCNNGG 2 cut(s) 47, 100
BssMI GATC 4 cut(s) 64, 619, 658, 682
BssNI GRCGYC 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 100
Bst4CI ACNGT 3 cut(s) 629, 643, 703
Bst6I CTCTTC 2 cut(s) 146, 219
BstACI GRCGYC 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 671
BstBAI YACGTR 1 cut(s) 70
BstBI TTCGAA 1 cut(s) 450
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 2 cut(s) 182, 347
BstDSI CCRYGG 2 cut(s) 47, 100
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 4 cut(s) 67, 622, 661, 685
BstMAI GTCTC 2 cut(s) 82, 632
BstMBI GATC 4 cut(s) 64, 619, 658, 682
BstMWI GCNNNNNNNGC 3 cut(s) 52, 278, 671
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 532
BstV1I GCAGC 5 cut(s) 5, 150, 290, 686, 689
BstX2I RGATCY 1 cut(s) 682
BstYI RGATCY 1 cut(s) 682
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 5 cut(s) 46, 99, 187, 230, 460
BtgI CCRYGG 2 cut(s) 47, 100
BtsIMutI CAGTG 1 cut(s) 523
Cac8I GCNNGC 1 cut(s) 161
CfoI GCGC 1 cut(s) 118
Cfr10I RCCGGY 1 cut(s) 460
Cfr13I GGNCC 2 cut(s) 44, 458
CseI GACGC 1 cut(s) 61
Csp6I GTAC 6 cut(s) 71, 94, 480, 608, 745, 769
CviAII CATG 4 cut(s) 101, 426, 550, 757
CviQI GTAC 6 cut(s) 71, 94, 480, 608, 745, 769
DdeI CTNAG 2 cut(s) 182, 347
DpnI GATC 4 cut(s) 66, 621, 660, 684
DpnII GATC 4 cut(s) 64, 619, 658, 682
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 146, 219
EarI CTCTTC 2 cut(s) 146, 219
Ecl136II GAGCTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 13
Eco32I GATATC 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 11
Eco81I CCTNAGG 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 11
EcoRI GAATTC 1 cut(s) 361
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 100
Esp3I CGTCTC 2 cut(s) 82, 632
FaeI CATG 4 cut(s) 104, 429, 553, 760
FaiI YATR 7 cut(s) 102, 427, 456, 545, 551, 743, 758
FatI CATG 4 cut(s) 100, 425, 549, 756
FbaI TGATCA 2 cut(s) 619, 658
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 5 cut(s) 19, 164, 279, 675, 678
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 5 cut(s) 19, 164, 279, 675, 678
FspBI CTAG 1 cut(s) 809
GlaI GCGC 1 cut(s) 117
GluI GCNGC 5 cut(s) 19, 164, 279, 675, 678
GsuI CTGGAG 1 cut(s) 130
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 5 cut(s) 46, 99, 187, 230, 460
HapII CCGG 4 cut(s) 56, 188, 290, 461
HgaI GACGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 4 cut(s) 104, 429, 553, 760
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HindIII AAGCTT 1 cut(s) 445
HinfI GANTC 1 cut(s) 392
HpaII CCGG 4 cut(s) 56, 188, 290, 461
HphI GGTGA 3 cut(s) 16, 502, 655
Hpy166II GTNNAC 4 cut(s) 51, 171, 559, 694
Hpy188I TCNGA 5 cut(s) 397, 442, 604, 624, 802
Hpy188III TCNNGA 2 cut(s) 196, 389
Hpy8I GTNNAC 4 cut(s) 51, 171, 559, 694
HpyCH4III ACNGT 3 cut(s) 629, 643, 703
HpyCH4IV ACGT 3 cut(s) 69, 318, 774
HpyCH4V TGCA 6 cut(s) 159, 244, 278, 434, 674, 756
HpyF10VI GCNNNNNNNGC 3 cut(s) 52, 278, 671
HpyF3I CTNAG 2 cut(s) 182, 347
HpySE526I ACGT 3 cut(s) 69, 318, 774
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 4 cut(s) 104, 429, 553, 760
HspAI GCGC 1 cut(s) 116
Ksp22I TGATCA 2 cut(s) 619, 658
Kzo9I GATC 4 cut(s) 64, 619, 658, 682
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 5 cut(s) 5, 150, 290, 686, 689
LweI GCATC 2 cut(s) 253, 360
MaeI CTAG 1 cut(s) 809
MaeII ACGT 3 cut(s) 69, 318, 774
MalI GATC 4 cut(s) 66, 621, 660, 684
MboI GATC 4 cut(s) 64, 619, 658, 682
MboII GAAGA 5 cut(s) 37, 49, 163, 233, 236
MfeI CAATTG 2 cut(s) 273, 666
MflI RGATCY 1 cut(s) 682
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 6 cut(s) 205, 273, 361, 571, 666, 803
MmeI TCCRAC 1 cut(s) 657
MslI CAYNNNNRTG 1 cut(s) 475
MspA1I CMGCKG 1 cut(s) 617
MspI CCGG 4 cut(s) 56, 188, 290, 461
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 2 cut(s) 273, 666
MwoI GCNNNNNNNGC 3 cut(s) 52, 278, 671
NciI CCSGG 1 cut(s) 291
NcoI CCATGG 1 cut(s) 100
NdeII GATC 4 cut(s) 64, 619, 658, 682
NlaIII CATG 4 cut(s) 104, 429, 553, 760
NspV TTCGAA 1 cut(s) 450
PfeI GAWTC 1 cut(s) 392
PkrI GCNGC 5 cut(s) 20, 165, 280, 676, 679
Ppu21I YACGTR 1 cut(s) 70
Psp124BI GAGCTC 1 cut(s) 13
Psp1406I AACGTT 2 cut(s) 318, 774
PspPI GGNCC 2 cut(s) 44, 458
PsuI RGATCY 1 cut(s) 682
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 6 cut(s) 72, 95, 481, 609, 746, 770
RsaNI GTAC 6 cut(s) 71, 94, 480, 608, 745, 769
RseI CAYNNNNRTG 1 cut(s) 475
SacI GAGCTC 1 cut(s) 13
SatI GCNGC 5 cut(s) 19, 164, 279, 675, 678
Sau3AI GATC 4 cut(s) 64, 619, 658, 682
Sau96I GGNCC 2 cut(s) 44, 458
ScaI AGTACT 1 cut(s) 609
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 2 cut(s) 253, 360
SfcI CTRYAG 1 cut(s) 532
SfuI TTCGAA 1 cut(s) 450
SmiMI CAYNNNNRTG 1 cut(s) 475
Sse9I AATT 6 cut(s) 205, 273, 361, 571, 666, 803
SsiI CCGC 2 cut(s) 166, 584
SspMI CTAG 1 cut(s) 809
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 3 cut(s) 629, 643, 703
TaiI ACGT 3 cut(s) 72, 321, 777
TaqI TCGA 2 cut(s) 450, 717
TasI AATT 6 cut(s) 205, 273, 361, 571, 666, 803
TatI WGTACW 2 cut(s) 479, 607
TfiI GAWTC 1 cut(s) 392
TscAI CASTG 1 cut(s) 523
TseI GCWGC 5 cut(s) 18, 163, 278, 674, 677
TspDTI ATGAA 4 cut(s) 321, 414, 566, 584
TspRI CASTG 1 cut(s) 523
XapI RAATTY 3 cut(s) 205, 361, 571
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 1 cut(s) 809
ZrmI AGTACT 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.