Rh6DG418100

Belongs to the bacterial ribosomal protein bL31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0012462
Physical Location & Seq
Forward (+)
60144888 .. 60146304
1417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG418100.1

Sequence Viewer

Length: 411 bp
ATGGCGCTCAATCTAACCAACACCTTCCTCCAAGGACATTCCTGCCCACGGGTCCTCCCTCCCAAGAAGGTCTCCAATGTTGTCGGGTCGGGGAGTTTCCGGCCTGTGGTGACGTGCAGGAAGAAGGAGATACACCCGGAGTTCTACGAGGACGCCAAGGTGTACTGCAAAGGAGAGCTGGTCATGACCACCGGTGGGACCCAGAAGGAGTACGTGGTGGATATCTGGTCGGGTAACCACCCCTTCTACCTCGGAAACCGGTCGGGTCTGCTGGTCGACGATGACCAGGTCGAGAAGTTCAGGAAGAAGTACGGCGGGCTCACGGAGATTATGGATATTCCGGTGCTCAAGGGAGAGATTGTGCTGCCCTCTAGGAAAAAAGGGGCTGGGAAAGGAGGCAAGAAGAAGTAG

Protein Analysis

136

Amino Acids

15.08

Weight (kDa)

9.54

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L31 PF01197 41 - 105 6.3e-18 Ribosomal protein L31
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75350
fragaria_vesca FvH4_2g39490 FvH4_2g39490
malus_domestica MD08G1027600.v1.1 MD15G1023800.v1.1
prunus_persica Prupe.1G376100_v2.0.a1
pyrus_communis pycom08g02160 pycom15g02040
rosa_chinensis RchiOBHm_Chr6g0301461
rosa_laevigata RLG00000011251
rosa_multiflora Rmu_co8470853.1_g000001 Rmu_sc0014417.1_g000013
rosa_roxburghii Rroxscaffold_7G00166780
rosa_rugosa Rorug06G0305000
rosa_samantha Rh6AG418600 Rh6BG424800 Rh6CG432100 Rh6DG418100
rosa_wichuraiana Rw6G036220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 276
AciI CCGC 1 cut(s) 315
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 3 cut(s) 164, 212, 311
AfiI CCNNNNNNNGG 3 cut(s) 48, 106, 195
AgeI ACCGGT 2 cut(s) 191, 258
AjiI CACGTC 1 cut(s) 114
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 76
AoxI GGCC 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 364
AsiGI ACCGGT 2 cut(s) 191, 258
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 52, 198
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 121
AvaII GGWCC 2 cut(s) 52, 198
BanII GRGCYC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 351
BceAI ACGGC 1 cut(s) 328
BciT130I CCWGG 1 cut(s) 287
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 1 cut(s) 372
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 1 cut(s) 365
BlsI GCNGC 1 cut(s) 366
Bme1390I CCNGG 2 cut(s) 137, 287
Bme18I GGWCC 2 cut(s) 52, 198
BmgBI CACGTC 1 cut(s) 114
BmgT120I GGNCC 2 cut(s) 52, 198
BmiI GGNNCC 3 cut(s) 53, 199, 200
BmrFI CCNGG 2 cut(s) 137, 287
BpuEI CTTGAG 1 cut(s) 332
BpuMI CCSGG 1 cut(s) 137
BsaAI YACGTR 1 cut(s) 214
BsaHI GRCGYC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 4 cut(s) 31, 47, 156, 250
BsaWI WCCGGW 3 cut(s) 191, 258, 340
BsaXI ACNNNNNCTCC 6 cut(s) 39, 69, 165, 195, 345, 375
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 106, 195
Bse118I RCCGGY 2 cut(s) 191, 258
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 4 cut(s) 31, 47, 156, 250
BseLI CCNNNNNNNGG 3 cut(s) 48, 106, 195
BseXI GCAGC 1 cut(s) 351
BseYI CCCAGC 1 cut(s) 386
BsgI GTGCAG 1 cut(s) 136
Bsh1285I CGRYCG 1 cut(s) 263
BshFI GGCC 1 cut(s) 103
BshTI ACCGGT 2 cut(s) 191, 258
BsiEI CGRYCG 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 348
BsiSI CCGG 5 cut(s) 100, 137, 192, 259, 341
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 3 cut(s) 48, 106, 195
BsmAI GTCTC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 211
BsnI GGCC 1 cut(s) 103
Bso31I GGTCTC 1 cut(s) 76
Bsp1286I GDGCHC 2 cut(s) 321, 348
BspACI CCGC 1 cut(s) 315
BspANI GGCC 1 cut(s) 103
BspHI TCATGA 1 cut(s) 183
BspLI GGNNCC 3 cut(s) 53, 199, 200
BspTNI GGTCTC 1 cut(s) 76
BsrFI RCCGGY 2 cut(s) 191, 258
BssAI RCCGGY 2 cut(s) 191, 258
BssECI CCNNGG 4 cut(s) 31, 47, 156, 250
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 2 cut(s) 31, 156
Bst2UI CCWGG 1 cut(s) 287
BstACI GRCGYC 1 cut(s) 153
BstBAI YACGTR 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 317
BstDSI CCRYGG 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 233
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 76
BstMCI CGRYCG 1 cut(s) 263
BstNI CCWGG 1 cut(s) 287
BstPI GGTNACC 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 135, 285
BstV1I GCAGC 1 cut(s) 351
BsuRI GGCC 1 cut(s) 103
BtgI CCRYGG 1 cut(s) 47
BtrI CACGTC 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 317
CciI TCATGA 1 cut(s) 183
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 191, 258
Cfr13I GGNCC 2 cut(s) 52, 198
CseI GACGC 1 cut(s) 161
CsiI ACCWGGT 1 cut(s) 285
Csp6I GTAC 3 cut(s) 163, 211, 310
CspAI ACCGGT 2 cut(s) 191, 258
CviAII CATG 1 cut(s) 184
CviJI RGCY 4 cut(s) 103, 178, 319, 386
CviKI_1 RGCY 4 cut(s) 103, 178, 319, 386
CviQI GTAC 3 cut(s) 163, 211, 310
Eco130I CCWWGG 2 cut(s) 31, 156
Eco24I GRGCYC 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 76
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 2 cut(s) 52, 198
Eco91I GGTNACC 1 cut(s) 233
EcoO109I RGGNCCY 2 cut(s) 52, 198
EcoO65I GGTNACC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 2 cut(s) 31, 156
EcoT38I GRGCYC 1 cut(s) 321
ErhI CCWWGG 2 cut(s) 31, 156
FaeI CATG 1 cut(s) 187
FaiI YATR 2 cut(s) 185, 332
FaqI GGGAC 1 cut(s) 211
FatI CATG 1 cut(s) 183
FauI CCCGC 1 cut(s) 308
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 365
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 365
FspBI CTAG 1 cut(s) 372
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 365
GsaI CCCAGC 1 cut(s) 390
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 103
HapII CCGG 5 cut(s) 100, 137, 192, 259, 341
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 1 cut(s) 187
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HpaII CCGG 5 cut(s) 100, 137, 192, 259, 341
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 2 cut(s) 163, 277
Hpy188I TCNGA 1 cut(s) 254
Hpy188III TCNNGA 3 cut(s) 184, 292, 301
Hpy8I GTNNAC 2 cut(s) 163, 277
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 5 cut(s) 34, 61, 118, 199, 253
HpyCH4IV ACGT 2 cut(s) 113, 213
HpyCH4V TGCA 2 cut(s) 117, 168
HpySE526I ACGT 2 cut(s) 113, 213
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 1 cut(s) 187
HspAI GCGC 1 cut(s) 5
KflI GGGWCCC 1 cut(s) 198
Lsp1109I GCAGC 1 cut(s) 351
MabI ACCWGGT 1 cut(s) 285
MaeI CTAG 1 cut(s) 372
MaeII ACGT 2 cut(s) 113, 213
MaeIII GTNAC 2 cut(s) 109, 233
MboII GAAGA 2 cut(s) 133, 316
MhlI GDGCHC 2 cut(s) 321, 348
MnlI CCTC 7 cut(s) 38, 65, 69, 142, 260, 379, 389
MspI CCGG 5 cut(s) 100, 137, 192, 259, 341
MspR9I CCNGG 2 cut(s) 137, 287
MvaI CCWGG 1 cut(s) 287
NciI CCSGG 1 cut(s) 137
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 3 cut(s) 53, 199, 200
NmuCI GTSAC 1 cut(s) 109
PagI TCATGA 1 cut(s) 183
PflFI GACNNNGTC 1 cut(s) 287
PinAI ACCGGT 2 cut(s) 191, 258
PkrI GCNGC 1 cut(s) 366
Ppu21I YACGTR 1 cut(s) 214
PpuMI RGGWCCY 2 cut(s) 52, 198
Psp5II RGGWCCY 2 cut(s) 52, 198
Psp6I CCWGG 1 cut(s) 285
PspEI GGTNACC 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 386
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 3 cut(s) 53, 199, 200
PspPI GGNCC 2 cut(s) 52, 198
PspPPI RGGWCCY 2 cut(s) 52, 198
PsyI GACNNNGTC 1 cut(s) 287
RsaI GTAC 3 cut(s) 164, 212, 311
RsaNI GTAC 3 cut(s) 163, 211, 310
SalI GTCGAC 1 cut(s) 275
SatI GCNGC 1 cut(s) 365
Sau96I GGNCC 2 cut(s) 52, 198
ScrFI CCNGG 2 cut(s) 137, 287
SduI GDGCHC 2 cut(s) 321, 348
SetI ASST 8 cut(s) 26, 72, 116, 162, 180, 216, 252, 291
SexAI ACCWGGT 1 cut(s) 285
SgrAI CRCCGGYG 1 cut(s) 191
SinI GGWCC 2 cut(s) 52, 198
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SsiI CCGC 1 cut(s) 315
SspMI CTAG 1 cut(s) 372
StyD4I CCNGG 2 cut(s) 135, 285
StyI CCWWGG 2 cut(s) 31, 156
TaiI ACGT 2 cut(s) 116, 216
TaqI TCGA 2 cut(s) 276, 291
TatI WGTACW 1 cut(s) 162
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 1 cut(s) 364
Tsp45I GTSAC 1 cut(s) 109
TspGWI ACGGA 1 cut(s) 338
Tth111I GACNNNGTC 1 cut(s) 287
VpaK11BI GGWCC 2 cut(s) 52, 198
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.