FvH4_2g39490

Belongs to the bacterial ribosomal protein bL31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012462
Physical Location & Seq
Reverse (-)
28357369 .. 28358257
889 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39490.t2

Sequence Viewer

Length: 411 bp
ATGGCGCTCAGTTTAACCAACGCCTTCCTCCAAGGACATTCCCGCCCGGCAATCCTCCCTCCCAAGAAGGTCCCCAACGTCGTTGTTGGGTCCGGGAGTTTCCGGCCGGTGGTGACGTGCCGGAAGAAGGAAATACACCCGGAGTTCTACGAGGACGCCAAAGTGTACTGCAAAGGAGAACTGGTGATGACCACAGGTGGGACCCAGAAGGAGTACGTGGTGGATGTCTGGTCGGGGAACCACCCGTTCTACCTCGGAAACCGGTCGGGTCTGCTGGTCGACGACGACCAGGTCGAGAAGTTCAGGAAGAAGTACGGCGGGCTGACCGAGATTATGGAGATTCCGGTGCTCAAAGGAGAGATTGTGCTGCCTTCTAGGAAGAAGGGGGCTTCTAAAGGCAAGAAAAAGTAA

Protein Analysis

137

Amino Acids

15.09

Weight (kDa)

9.61

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L31 PF01197 46 - 110 7.3e-18 Ribosomal protein L31
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75350
fragaria_vesca FvH4_2g39490 FvH4_2g39490
malus_domestica MD08G1027600.v1.1 MD15G1023800.v1.1
prunus_persica Prupe.1G376100_v2.0.a1
pyrus_communis pycom08g02160 pycom15g02040
rosa_chinensis RchiOBHm_Chr6g0301461
rosa_laevigata RLG00000011251
rosa_multiflora Rmu_co8470853.1_g000001 Rmu_sc0014417.1_g000013
rosa_roxburghii Rroxscaffold_7G00166780
rosa_rugosa Rorug06G0305000
rosa_samantha Rh6AG418600 Rh6BG424800 Rh6CG432100 Rh6DG418100
rosa_wichuraiana Rw6G036220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 290
AccI GTMKAC 1 cut(s) 279
AciI CCGC 2 cut(s) 43, 318
AcoI YGGCCR 1 cut(s) 104
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 3 cut(s) 167, 215, 314
AfiI CCNNNNNNNGG 3 cut(s) 109, 127, 198
AgeI ACCGGT 1 cut(s) 261
AjiI CACGTC 1 cut(s) 117
AjnI CCWGG 1 cut(s) 288
Alw21I GWGCWC 1 cut(s) 351
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 367
AsiGI ACCGGT 1 cut(s) 261
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 3 cut(s) 70, 90, 201
AsuC2I CCSGG 3 cut(s) 47, 94, 140
AsuHPI GGTGA 2 cut(s) 124, 196
AvaII GGWCC 3 cut(s) 70, 90, 201
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 354
BceAI ACGGC 1 cut(s) 331
BciT130I CCWGG 1 cut(s) 290
BcnI CCSGG 3 cut(s) 47, 94, 140
BfaI CTAG 1 cut(s) 375
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 369
Bme1390I CCNGG 4 cut(s) 47, 94, 140, 290
Bme18I GGWCC 3 cut(s) 70, 90, 201
BmgBI CACGTC 1 cut(s) 117
BmgT120I GGNCC 3 cut(s) 70, 90, 201
BmiI GGNNCC 5 cut(s) 72, 91, 202, 203, 239
BmrFI CCNGG 4 cut(s) 47, 94, 140, 290
BpuMI CCSGG 3 cut(s) 47, 94, 140
BsaAI YACGTR 1 cut(s) 217
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 31, 253
BsaWI WCCGGW 2 cut(s) 261, 343
BsaXI ACNNNNNCTCC 4 cut(s) 168, 198, 348, 378
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 127, 198
Bse118I RCCGGY 2 cut(s) 106, 261
Bse1I ACTGG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 2 cut(s) 31, 253
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 3 cut(s) 109, 127, 198
BseMII CTCAG 1 cut(s) 22
BseNI ACTGG 1 cut(s) 186
BseX3I CGGCCG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 354
Bsh1285I CGRYCG 2 cut(s) 107, 266
BshFI GGCC 1 cut(s) 106
BshTI ACCGGT 1 cut(s) 261
BsiEI CGRYCG 2 cut(s) 107, 266
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 8 cut(s) 47, 93, 103, 107, 121, 140, 262, 344
BslFI GGGAC 2 cut(s) 56, 214
BslI CCNNNNNNNGG 3 cut(s) 109, 127, 198
BsmFI GGGAC 2 cut(s) 56, 214
BsnI GGCC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 351
BspACI CCGC 2 cut(s) 43, 318
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 21
BspLI GGNNCC 5 cut(s) 72, 91, 202, 203, 239
BsrFI RCCGGY 2 cut(s) 106, 261
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 2 cut(s) 106, 261
BssECI CCNNGG 2 cut(s) 31, 253
BssNI GRCGYC 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 1 cut(s) 290
BstACI GRCGYC 1 cut(s) 156
BstBAI YACGTR 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 229
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstMCI CGRYCG 2 cut(s) 107, 266
BstNI CCWGG 1 cut(s) 290
BstSCI CCNGG 4 cut(s) 45, 92, 138, 288
BstV1I GCAGC 1 cut(s) 354
BstZI CGGCCG 1 cut(s) 104
BsuRI GGCC 1 cut(s) 106
BtrI CACGTC 1 cut(s) 117
BtsCI GGATG 1 cut(s) 229
Cac8I GCNNGC 1 cut(s) 320
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 106, 261
Cfr13I GGNCC 3 cut(s) 70, 90, 201
CseI GACGC 1 cut(s) 164
CsiI ACCWGGT 1 cut(s) 288
Csp6I GTAC 3 cut(s) 166, 214, 313
CspAI ACCGGT 1 cut(s) 261
CviJI RGCY 3 cut(s) 106, 322, 389
CviKI_1 RGCY 3 cut(s) 106, 322, 389
CviQI GTAC 3 cut(s) 166, 214, 313
DdeI CTNAG 1 cut(s) 8
DrdI GACNNNNNNGTC 1 cut(s) 290
DseDI GACNNNNNNGTC 1 cut(s) 290
EaeI YGGCCR 1 cut(s) 104
EagI CGGCCG 1 cut(s) 104
EclXI CGGCCG 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 31
Eco47I GGWCC 3 cut(s) 70, 90, 201
Eco52I CGGCCG 1 cut(s) 104
EcoO109I RGGNCCY 2 cut(s) 70, 201
EcoRII CCWGG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaiI YATR 1 cut(s) 335
FaqI GGGAC 2 cut(s) 56, 214
FauI CCCGC 2 cut(s) 50, 311
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 368
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 368
FspBI CTAG 1 cut(s) 375
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 106
HapII CCGG 8 cut(s) 47, 93, 103, 107, 121, 140, 262, 344
HgaI GACGC 1 cut(s) 164
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 156
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 1 cut(s) 340
HpaII CCGG 8 cut(s) 47, 93, 103, 107, 121, 140, 262, 344
HphI GGTGA 2 cut(s) 124, 196
Hpy166II GTNNAC 2 cut(s) 166, 280
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 2 cut(s) 295, 304
Hpy8I GTNNAC 2 cut(s) 166, 280
Hpy99I CGWCG 3 cut(s) 83, 284, 287
HpyAV CCTTC 6 cut(s) 34, 61, 121, 202, 376, 381
HpyCH4IV ACGT 3 cut(s) 78, 116, 216
HpyCH4V TGCA 1 cut(s) 171
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 3 cut(s) 78, 116, 216
Hsp92I GRCGYC 1 cut(s) 156
HspAI GCGC 1 cut(s) 5
KflI GGGWCCC 1 cut(s) 201
Lsp1109I GCAGC 1 cut(s) 354
MabI ACCWGGT 1 cut(s) 288
MaeI CTAG 1 cut(s) 375
MaeII ACGT 3 cut(s) 78, 116, 216
MaeIII GTNAC 1 cut(s) 112
MboII GAAGA 3 cut(s) 136, 319, 391
MhlI GDGCHC 1 cut(s) 351
MnlI CCTC 5 cut(s) 38, 65, 69, 145, 263
MseI TTAA 1 cut(s) 14
MspI CCGG 8 cut(s) 47, 93, 103, 107, 121, 140, 262, 344
MspR9I CCNGG 4 cut(s) 47, 94, 140, 290
MvaI CCWGG 1 cut(s) 290
NciI CCSGG 3 cut(s) 47, 94, 140
NlaIV GGNNCC 5 cut(s) 72, 91, 202, 203, 239
NmuCI GTSAC 1 cut(s) 112
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PfeI GAWTC 1 cut(s) 340
PflFI GACNNNGTC 1 cut(s) 290
PfoI TCCNGGA 1 cut(s) 92
PinAI ACCGGT 1 cut(s) 261
PkrI GCNGC 1 cut(s) 369
Ppu21I YACGTR 1 cut(s) 217
PpuMI RGGWCCY 2 cut(s) 70, 201
Psp5II RGGWCCY 2 cut(s) 70, 201
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 5 cut(s) 72, 91, 202, 203, 239
PspPI GGNCC 3 cut(s) 70, 90, 201
PspPPI RGGWCCY 2 cut(s) 70, 201
PsyI GACNNNGTC 1 cut(s) 290
RsaI GTAC 3 cut(s) 167, 215, 314
RsaNI GTAC 3 cut(s) 166, 214, 313
SalI GTCGAC 1 cut(s) 278
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 1 cut(s) 368
Sau96I GGNCC 3 cut(s) 70, 90, 201
ScrFI CCNGG 4 cut(s) 47, 94, 140, 290
SduI GDGCHC 1 cut(s) 351
SetI ASST 7 cut(s) 72, 81, 119, 199, 219, 255, 294
SexAI ACCWGGT 1 cut(s) 288
SinI GGWCC 3 cut(s) 70, 90, 201
SsiI CCGC 2 cut(s) 43, 318
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 4 cut(s) 45, 92, 138, 288
StyI CCWWGG 1 cut(s) 31
TaiI ACGT 3 cut(s) 81, 119, 219
TaqI TCGA 2 cut(s) 279, 294
TaqII GACCGA 1 cut(s) 341
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 1 cut(s) 112
Tth111I GACNNNGTC 1 cut(s) 290
VpaK11BI GGWCC 3 cut(s) 70, 90, 201
XmiI GTMKAC 1 cut(s) 279
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.