Rmu_co8470853.1_g000001

Belongs to the bacterial ribosomal protein bL31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8470853.1
OG0012462
Physical Location & Seq
Forward (+)
1 .. 768
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8470853.1_g000001.1.cds

Sequence Viewer

Length: 448 bp
aatctatcttctccgtccttcccaaaccgaagcagaaatggcgctcaatctaaccaacaccttcctccaaggacattcctgcccacgggtcctccctcccaagaaggtctccaatgttgtcgggtcggggagtttccggcctgtggtgacgtgcaggaagaaggagacacacccggagttctacgaggacgccaaggtgtactgcaaaggagagctggtcatgaccaccggtgggacccagaaggagtacgtggtggatatctggtcgggtaaccaccccttctacctcggcaaccggtcgggtctgctggtcgacgatgaccaggtcgagaagttcaggaagaagtacggcgggctcacggagattatggatattccggtgctcaaaggagagattgtgctgccctctaggaaaaaaggggctgggaagggaggcaagaagaagtag

Protein Analysis

148

Amino Acids

16.47

Weight (kDa)

9.42

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75350
fragaria_vesca FvH4_2g39490 FvH4_2g39490
malus_domestica MD08G1027600.v1.1 MD15G1023800.v1.1
prunus_persica Prupe.1G376100_v2.0.a1
pyrus_communis pycom08g02160 pycom15g02040
rosa_chinensis RchiOBHm_Chr6g0301461
rosa_laevigata RLG00000011251
rosa_multiflora Rmu_co8470853.1_g000001 Rmu_sc0014417.1_g000013
rosa_roxburghii Rroxscaffold_7G00166780
rosa_rugosa Rorug06G0305000
rosa_samantha Rh6AG418600 Rh6BG424800 Rh6CG432100 Rh6DG418100
rosa_wichuraiana Rw6G036220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 313
AciI CCGC 1 cut(s) 352
AcyI GRCGYC 1 cut(s) 190
AfaI GTAC 3 cut(s) 201, 249, 348
AfiI CCNNNNNNNGG 3 cut(s) 85, 143, 232
AgeI ACCGGT 2 cut(s) 228, 295
AjiI CACGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 2 cut(s) 113, 159
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 401
AsiGI ACCGGT 2 cut(s) 228, 295
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 89, 235
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 158
AvaII GGWCC 2 cut(s) 89, 235
BanII GRGCYC 1 cut(s) 358
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 1 cut(s) 388
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 1 cut(s) 324
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 2 cut(s) 113, 159
BfaI CTAG 1 cut(s) 409
BfoI RGCGCY 1 cut(s) 45
BisI GCNGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 403
Bme1390I CCNGG 2 cut(s) 174, 324
Bme18I GGWCC 2 cut(s) 89, 235
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 89, 235
BmiI GGNNCC 3 cut(s) 90, 236, 237
BmrFI CCNGG 2 cut(s) 174, 324
BpuMI CCSGG 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 190
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 4 cut(s) 68, 84, 193, 287
BsaWI WCCGGW 3 cut(s) 228, 295, 377
BsaXI ACNNNNNCTCC 6 cut(s) 76, 106, 202, 232, 382, 412
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 143, 232
Bse118I RCCGGY 2 cut(s) 228, 295
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 4 cut(s) 68, 84, 193, 287
BseLI CCNNNNNNNGG 3 cut(s) 85, 143, 232
BseXI GCAGC 1 cut(s) 388
BseYI CCCAGC 1 cut(s) 423
BsgI GTGCAG 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 300
BshFI GGCC 1 cut(s) 140
BshTI ACCGGT 2 cut(s) 228, 295
BsiEI CGRYCG 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 385
BsiSI CCGG 5 cut(s) 137, 174, 229, 296, 378
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 3 cut(s) 85, 143, 232
BsmAI GTCTC 2 cut(s) 113, 159
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 140
Bso31I GGTCTC 1 cut(s) 113
Bsp1286I GDGCHC 2 cut(s) 358, 385
BspACI CCGC 1 cut(s) 352
BspANI GGCC 1 cut(s) 140
BspHI TCATGA 1 cut(s) 220
BspLI GGNNCC 3 cut(s) 90, 236, 237
BspTNI GGTCTC 1 cut(s) 113
BsrFI RCCGGY 2 cut(s) 228, 295
BssAI RCCGGY 2 cut(s) 228, 295
BssECI CCNNGG 4 cut(s) 68, 84, 193, 287
BssNI GRCGYC 1 cut(s) 190
BssT1I CCWWGG 2 cut(s) 68, 193
Bst2UI CCWGG 1 cut(s) 324
BstACI GRCGYC 1 cut(s) 190
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 354
BstDSI CCRYGG 1 cut(s) 84
BstEII GGTNACC 1 cut(s) 270
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstMAI GTCTC 2 cut(s) 113, 159
BstMCI CGRYCG 1 cut(s) 300
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstNI CCWGG 1 cut(s) 324
BstPI GGTNACC 1 cut(s) 270
BstSCI CCNGG 2 cut(s) 172, 322
BstV1I GCAGC 1 cut(s) 388
BsuRI GGCC 1 cut(s) 140
BtgI CCRYGG 1 cut(s) 84
BtrI CACGTC 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 354
CciI TCATGA 1 cut(s) 220
CfoI GCGC 1 cut(s) 44
Cfr10I RCCGGY 2 cut(s) 228, 295
Cfr13I GGNCC 2 cut(s) 89, 235
CseI GACGC 1 cut(s) 198
CsiI ACCWGGT 1 cut(s) 322
Csp6I GTAC 3 cut(s) 200, 248, 347
CspAI ACCGGT 2 cut(s) 228, 295
CviAII CATG 1 cut(s) 221
CviJI RGCY 4 cut(s) 140, 215, 356, 423
CviKI_1 RGCY 4 cut(s) 140, 215, 356, 423
CviQI GTAC 3 cut(s) 200, 248, 347
Eco130I CCWWGG 2 cut(s) 68, 193
Eco24I GRGCYC 1 cut(s) 358
Eco31I GGTCTC 1 cut(s) 113
Eco32I GATATC 1 cut(s) 260
Eco47I GGWCC 2 cut(s) 89, 235
Eco91I GGTNACC 1 cut(s) 270
EcoO109I RGGNCCY 2 cut(s) 89, 235
EcoO65I GGTNACC 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 322
EcoRV GATATC 1 cut(s) 260
EcoT14I CCWWGG 2 cut(s) 68, 193
EcoT38I GRGCYC 1 cut(s) 358
ErhI CCWWGG 2 cut(s) 68, 193
FaeI CATG 1 cut(s) 224
FaiI YATR 2 cut(s) 222, 369
FaqI GGGAC 1 cut(s) 248
FatI CATG 1 cut(s) 220
FauI CCCGC 1 cut(s) 345
FblI GTMKAC 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 402
FriOI GRGCYC 1 cut(s) 358
Fsp4HI GCNGC 1 cut(s) 402
FspBI CTAG 1 cut(s) 409
GlaI GCGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 402
GsaI CCCAGC 1 cut(s) 427
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 1 cut(s) 140
HapII CCGG 5 cut(s) 137, 174, 229, 296, 378
HgaI GACGC 1 cut(s) 198
HhaI GCGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 190
Hin1II CATG 1 cut(s) 224
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HincII GTYRAC 1 cut(s) 314
HindII GTYRAC 1 cut(s) 314
HpaII CCGG 5 cut(s) 137, 174, 229, 296, 378
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 200, 314
Hpy188III TCNNGA 3 cut(s) 221, 329, 338
Hpy8I GTNNAC 2 cut(s) 200, 314
Hpy99I CGWCG 1 cut(s) 318
HpyAV CCTTC 7 cut(s) 28, 71, 98, 155, 236, 290, 422
HpyCH4IV ACGT 2 cut(s) 150, 250
HpyCH4V TGCA 2 cut(s) 154, 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpySE526I ACGT 2 cut(s) 150, 250
Hsp92I GRCGYC 1 cut(s) 190
Hsp92II CATG 1 cut(s) 224
HspAI GCGC 1 cut(s) 42
KflI GGGWCCC 1 cut(s) 235
Lsp1109I GCAGC 1 cut(s) 388
MabI ACCWGGT 1 cut(s) 322
MaeI CTAG 1 cut(s) 409
MaeII ACGT 2 cut(s) 150, 250
MaeIII GTNAC 2 cut(s) 146, 270
MboII GAAGA 2 cut(s) 170, 353
MhlI GDGCHC 2 cut(s) 358, 385
MnlI CCTC 7 cut(s) 75, 102, 106, 179, 297, 416, 426
MspI CCGG 5 cut(s) 137, 174, 229, 296, 378
MspR9I CCNGG 2 cut(s) 174, 324
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 39
NciI CCSGG 1 cut(s) 174
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 3 cut(s) 90, 236, 237
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 146
PagI TCATGA 1 cut(s) 220
PflFI GACNNNGTC 1 cut(s) 324
PinAI ACCGGT 2 cut(s) 228, 295
PkrI GCNGC 1 cut(s) 403
Ppu21I YACGTR 1 cut(s) 251
PpuMI RGGWCCY 2 cut(s) 89, 235
Psp5II RGGWCCY 2 cut(s) 89, 235
Psp6I CCWGG 1 cut(s) 322
PspEI GGTNACC 1 cut(s) 270
PspFI CCCAGC 1 cut(s) 423
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 3 cut(s) 90, 236, 237
PspPI GGNCC 2 cut(s) 89, 235
PspPPI RGGWCCY 2 cut(s) 89, 235
PsyI GACNNNGTC 1 cut(s) 324
RsaI GTAC 3 cut(s) 201, 249, 348
RsaNI GTAC 3 cut(s) 200, 248, 347
SalI GTCGAC 1 cut(s) 312
SatI GCNGC 1 cut(s) 402
Sau96I GGNCC 2 cut(s) 89, 235
ScrFI CCNGG 2 cut(s) 174, 324
SduI GDGCHC 2 cut(s) 358, 385
SetI ASST 8 cut(s) 63, 109, 153, 199, 217, 253, 289, 328
SexAI ACCWGGT 1 cut(s) 322
SgrAI CRCCGGYG 1 cut(s) 228
SinI GGWCC 2 cut(s) 89, 235
SsiI CCGC 1 cut(s) 352
SspMI CTAG 1 cut(s) 409
StyD4I CCNGG 2 cut(s) 172, 322
StyI CCWWGG 2 cut(s) 68, 193
TaiI ACGT 2 cut(s) 153, 253
TaqI TCGA 2 cut(s) 313, 328
TatI WGTACW 1 cut(s) 199
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 146
TspGWI ACGGA 1 cut(s) 375
Tth111I GACNNNGTC 1 cut(s) 324
VpaK11BI GGWCC 2 cut(s) 89, 235
XmiI GTMKAC 1 cut(s) 313
XspI CTAG 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.