Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010406

Physical Location & Seq

Genomic Coordinates Reverse (-)

28415152 .. 28416961

Gene Structure 1810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAGGGATTAAAGCTCTCAGAAGCGGAATTGATGATTTTTATTCATCCTTCCCAGAGCAGAAACGTTTTTCAAGGAATTTGTCGCGAGCTCAGTTCTCTTCTATTCCAGTATAATGAAACCTTTGATGGAGTTCTATTGGCTTATGATGCTACTGTGAAAAGCAAACAAGCTAAAATCCTTACAGGACTTCATCCTTACTTTGGCGTCAGAGTTAACACTAGACTACTCTTATTTGATCCTAAGCCCAAGAGTTTTGTAGAAGGGAAAATTGTGAAGATTTCTCCAGAGTCAATCCATGTTATTGTTCTTGGTTTCTCTGCTGCTGTCATTACAGACGTTGATATCCGGGAAGAGTTCAAATACAGAGTGAGAGATGGTGAAGGTTCTTTCGTGAGCAGATCGCATAAACGGCATGCACTAAAGCTTGGAACTATGTTGCGCCTTCAAGTCCAAAGTTTTGATGAAGAGGTTATGCATATAGCTGGATCTCTACTTCCGGAAAACACAGGATGCGTTAAGTGGCTCGAAAAGAAGTCTGAAGAAGCTTTGCCTACGGATAGGGATCATAAAAGGAGGAAACTCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

S1 SHS2_Rpb7-N

Protein Analysis

196

Amino Acids

22.29

Weight (kDa)

9.04

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SHS2_Rpb7-N	PF03876	10 - 63	2.5e-07	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75670 AT1G75670 AT1G75670
fragaria_vesca	FvH4_2g17590
malus_domestica	MD05G1155200.v1.1 MD10G1149500.v1.1
prunus_persica	Prupe.8G188100_v2.0.a1 Prupe.8G188100_v2.0.a1 Prupe.8G188100_v2.0.a1
pyrus_communis	pycom05g14860
rosa_chinensis	RchiOBHm_Chr6g0282531
rosa_laevigata	RLG00000012887
rosa_multiflora	Rmu_sc0000283.1_g000008 Rmu_sc0005697.1_g000028
rosa_roxburghii	Rroxscaffold_7G00186290
rosa_rugosa	Rorug06G0147300
rosa_samantha	Rh6AG260500 Rh6BG263600 Rh6CG262800 Rh6DG254700
rosa_wichuraiana	Rw6G022530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	87
AccIII	TCCGGA	1 cut(s)	499
AciI	CCGC	1 cut(s)	26
AclI	AACGTT	1 cut(s)	66
AclWI	GGATC	3 cut(s)	233, 496, 573
AcsI	RAATTY	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	561
AcyI	GRCGYC	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	74, 361, 449
AluBI	AGCT	6 cut(s)	16, 91, 173, 427, 485, 548
AluI	AGCT	6 cut(s)	16, 91, 173, 427, 485, 548
Alw21I	GWGCWC	1 cut(s)	93
AlwI	GGATC	3 cut(s)	233, 496, 573
Aor13HI	TCCGGA	1 cut(s)	499
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	444
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	2 cut(s)	122, 371
BceAI	ACGGC	1 cut(s)	428
BcnI	CCSGG	1 cut(s)	350
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	350
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	139, 503
BpmI	CTGGAG	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	350
BsaBI	GATNNNNATC	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	499
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	109
Bse8I	GATNNNNATC	1 cut(s)	564
BseAI	TCCGGA	1 cut(s)	499
BseGI	GGATG	3 cut(s)	46, 193, 518
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	2 cut(s)	33, 106
BseNI	ACTGG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	310
Bsh1236I	CGCG	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	349, 500
BslI	CCNNNNNNNGG	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp13I	TCCGGA	1 cut(s)	499
Bsp143I	GATC	4 cut(s)	238, 401, 488, 565
Bsp68I	TCGCGA	1 cut(s)	87
BspACI	CCGC	1 cut(s)	26
BspCNI	CTCAG	2 cut(s)	32, 105
BspEI	TCCGGA	1 cut(s)	499
BspFNI	CGCG	1 cut(s)	87
BspPI	GGATC	3 cut(s)	233, 496, 573
BsrI	ACTGG	1 cut(s)	109
BssMI	GATC	4 cut(s)	238, 401, 488, 565
BssNI	GRCGYC	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	3 cut(s)	105, 348, 462
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	89, 417
BstDEI	CTNAG	3 cut(s)	19, 92, 243
BstF5I	GGATG	3 cut(s)	46, 193, 518
BstFNI	CGCG	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	4 cut(s)	241, 404, 491, 568
BstMBI	GATC	4 cut(s)	238, 401, 488, 565
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 412
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	348
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	310
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
BtsCI	GGATG	3 cut(s)	46, 193, 518
BtuMI	TCGCGA	1 cut(s)	87
Cac8I	GCNNGC	2 cut(s)	89, 417
CfoI	GCGC	1 cut(s)	444
CseI	GACGC	1 cut(s)	196
CviAII	CATG	2 cut(s)	299, 416
CviJI	RGCY	9 cut(s)	16, 91, 143, 173, 247, 427, 485, 526, 548
CviKI_1	RGCY	9 cut(s)	16, 91, 143, 173, 247, 427, 485, 526, 548
DdeI	CTNAG	3 cut(s)	19, 92, 243
DpnI	GATC	4 cut(s)	240, 403, 490, 567
DpnII	GATC	4 cut(s)	238, 401, 488, 565
Eam1104I	CTCTTC	3 cut(s)	105, 348, 462
EarI	CTCTTC	3 cut(s)	105, 348, 462
Ecl136II	GAGCTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	346
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	561
EcoICRI	GAGCTC	1 cut(s)	91
EcoRV	GATATC	1 cut(s)	346
EcoT22I	ATGCAT	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	93
FaeI	CATG	2 cut(s)	302, 419
FatI	CATG	2 cut(s)	298, 415
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	3 cut(s)	33, 180, 525
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	1 cut(s)	324
GsuI	CTGGAG	1 cut(s)	270
HapII	CCGG	2 cut(s)	349, 500
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	1 cut(s)	444
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	2 cut(s)	302, 419
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	2 cut(s)	425, 546
HinfI	GANTC	1 cut(s)	290
HpaI	GTTAAC	1 cut(s)	217
HpaII	CCGG	2 cut(s)	349, 500
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	3 cut(s)	22, 212, 541
Hpy188III	TCNNGA	4 cut(s)	86, 287, 394, 500
Hpy8I	GTNNAC	1 cut(s)	217
HpyAV	CCTTC	4 cut(s)	60, 257, 377, 455
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	2 cut(s)	66, 339
HpyCH4V	TGCA	2 cut(s)	419, 478
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 412
HpyF3I	CTNAG	3 cut(s)	19, 92, 243
HpySE526I	ACGT	2 cut(s)	66, 339
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	302, 419
HspAI	GCGC	1 cut(s)	442
Kpn2I	TCCGGA	1 cut(s)	499
KspAI	GTTAAC	1 cut(s)	217
Kzo9I	GATC	4 cut(s)	238, 401, 488, 565
LpnPI	CCDG	8 cut(s)	68, 122, 171, 300, 362, 471, 495, 513
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	2 cut(s)	139, 503
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	2 cut(s)	66, 339
MalI	GATC	4 cut(s)	240, 403, 490, 567
MboI	GATC	4 cut(s)	238, 401, 488, 565
MboII	GAAGA	5 cut(s)	92, 289, 365, 479, 554
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	3 cut(s)	29, 78, 270
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	2 cut(s)	463, 570
Mph1103I	ATGCAT	1 cut(s)	480
MroI	TCCGGA	1 cut(s)	499
MseI	TTAA	3 cut(s)	11, 216, 519
MspI	CCGG	2 cut(s)	349, 500
MspR9I	CCNGG	1 cut(s)	350
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	149, 412
NciI	CCSGG	1 cut(s)	350
NdeII	GATC	4 cut(s)	238, 401, 488, 565
NlaIII	CATG	2 cut(s)	302, 419
NruI	TCGCGA	1 cut(s)	87
NsiI	ATGCAT	1 cut(s)	480
NspI	RCATGY	1 cut(s)	419
PaeI	GCATGC	1 cut(s)	419
PfoI	TCCNGGA	1 cut(s)	348
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Psp124BI	GAGCTC	1 cut(s)	93
Psp1406I	AACGTT	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	488
RruI	TCGCGA	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	3 cut(s)	11, 216, 519
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	4 cut(s)	238, 401, 488, 565
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	93
SfaNI	GCATC	2 cut(s)	139, 503
SphI	GCATGC	1 cut(s)	419
Sse9I	AATT	3 cut(s)	29, 78, 270
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	2 cut(s)	69, 342
TaqI	TCGA	1 cut(s)	528
TasI	AATT	3 cut(s)	29, 78, 270
Tru1I	TTAA	3 cut(s)	11, 216, 519
Tru9I	TTAA	3 cut(s)	11, 216, 519
TseI	GCWGC	1 cut(s)	323
TspDTI	ATGAA	4 cut(s)	35, 132, 182, 480
TspGWI	ACGGA	1 cut(s)	572
XapI	RAATTY	1 cut(s)	78
XceI	RCATGY	1 cut(s)	419
XspI	CTAG	1 cut(s)	222
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.