Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010406

Physical Location & Seq

Genomic Coordinates Reverse (-)

45248176 .. 45251006

Gene Structure 2831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG260500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAGGGCTTGAAGGTTTCCGATACCAATATGAAAGTGTTTCTGCACCCATCGAAGAGCGGCGACGTCGACGGTGCAATTCATCACCAGCTGAGCTCCATGATTTTCAAGTTTGATGATAATTTGGATGGTGCCTTAGTTGCTTATAAGTTTGACATTTCATCCAAGGATGCAAAGATTCTGAATGGGGTTCATCCTTATTTTACTGTGACCATAAGAGCAACGTTGTTACTTTTCTCTCCAAAGCCAAATATGCTTGTAGAAGGCAAGGTGGTGAAAGTCACACGAGGATCCATATCTGTCATTGTTCTTGGCTTTTCATGTGCCTTCATAAAAGATGAAGATATTCGCGAAGAGTTTAAGTATAAATATAAACGTGGCAAGCAAGTATATATTAGCAGATATCAGAAGCGGCATGTGATAAAAGTTGGAAGCATGATTCGACTTTCAGTCAATAGTTTGGATGTGGAGACACTGCACATATATGGTTCTTTGCGTCCAGCTCACACAGGGAGCATTCGCTTTTTAGATAAAGATATGGAAGATAATGGACTTGCAGACAGGTTTTTAACCTTGGAATTCTATAAGTTGAAAGAGTTCATTGTTTGTTTGTTTTTTTTTTTTTTCCTTAAACTTTTCATTGACGGAAAAAAAAGTACCAAGTGGATTCTGCATTCTAATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

S1 SHS2_Rpb7-N

Protein Analysis

228

Amino Acids

26.17

Weight (kDa)

9.35

Isoelectric Point (pI)

16.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75670 AT1G75670 AT1G75670
fragaria_vesca	FvH4_2g17590
malus_domestica	MD05G1155200.v1.1 MD10G1149500.v1.1
prunus_persica	Prupe.8G188100_v2.0.a1 Prupe.8G188100_v2.0.a1 Prupe.8G188100_v2.0.a1
pyrus_communis	pycom05g14860
rosa_chinensis	RchiOBHm_Chr6g0282531
rosa_laevigata	RLG00000012887
rosa_multiflora	Rmu_sc0000283.1_g000008 Rmu_sc0005697.1_g000028
rosa_roxburghii	Rroxscaffold_7G00186290
rosa_rugosa	Rorug06G0147300
rosa_samantha	Rh6AG260500 Rh6BG263600 Rh6CG262800 Rh6DG254700
rosa_wichuraiana	Rw6G022530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
AatII	GACGTC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	131
AccBSI	CCGCTC	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	1 cut(s)	351
AciI	CCGC	2 cut(s)	60, 412
AclI	AACGTT	1 cut(s)	224
AclWI	GGATC	2 cut(s)	285, 298
AcsI	RAATTY	1 cut(s)	578
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	658
AgsI	TTSAA	3 cut(s)	13, 109, 592
AhdI	GACNNNNNGTC	1 cut(s)	449
AluBI	AGCT	3 cut(s)	91, 96, 503
AluI	AGCT	3 cut(s)	91, 96, 503
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	2 cut(s)	285, 298
ApoI	RAATTY	1 cut(s)	578
Asp700I	GAANNNNTTC	2 cut(s)	345, 596
AsuHPI	GGTGA	2 cut(s)	77, 286
BamHI	GGATCC	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	98
BauI	CACGAG	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	98
BccI	CCATC	2 cut(s)	58, 122
BcoDI	GTCTC	1 cut(s)	464
BisI	GCNGC	2 cut(s)	61, 413
BlpI	GCTNAGC	1 cut(s)	92
BlsI	GCNGC	2 cut(s)	62, 414
BmeRI	GACNNNNNGTC	1 cut(s)	449
BmiI	GGNNCC	2 cut(s)	133, 292
BmsI	GCATC	1 cut(s)	160
Bpu1102I	GCTNAGC	1 cut(s)	92
BsaBI	GATNNNNATC	1 cut(s)	295
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	165, 573
Bse8I	GATNNNNATC	1 cut(s)	295
BseDI	CCNNGG	2 cut(s)	165, 573
BseGI	GGATG	5 cut(s)	133, 161, 175, 193, 469
BseJI	GATNNNNATC	1 cut(s)	295
BseMII	CTCAG	1 cut(s)	83
BsgI	GTGCAG	2 cut(s)	29, 461
Bsh1236I	CGCG	1 cut(s)	351
BshNI	GGYRCC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	464
BsmI	GAATGC	2 cut(s)	516, 673
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	1 cut(s)	290
Bsp1720I	GCTNAGC	1 cut(s)	92
Bsp68I	TCGCGA	1 cut(s)	351
BspACI	CCGC	2 cut(s)	60, 412
BspCNI	CTCAG	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	2 cut(s)	133, 292
BspPI	GGATC	2 cut(s)	285, 298
BspQI	GCTCTTC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	131
BsrBI	CCGCTC	1 cut(s)	60
BssECI	CCNNGG	2 cut(s)	165, 573
BssMI	GATC	1 cut(s)	290
BssNI	GRCGYC	1 cut(s)	66
BssSI	CACGAG	1 cut(s)	285
BssT1I	CCWWGG	2 cut(s)	165, 573
Bst2BI	CACGAG	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	74, 208
Bst6I	CTCTTC	2 cut(s)	50, 348
BstACI	GRCGYC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	383
BstDEI	CTNAG	2 cut(s)	92, 136
BstF5I	GGATG	5 cut(s)	133, 161, 175, 193, 469
BstFNI	CGCG	1 cut(s)	351
BstKTI	GATC	1 cut(s)	293
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 253
BstNSI	RCATGY	1 cut(s)	419
BstUI	CGCG	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BtsCI	GGATG	5 cut(s)	133, 161, 175, 193, 469
BtsI	GCAGTG	1 cut(s)	473
BtsIMutI	CAGTG	1 cut(s)	473
BtuMI	TCGCGA	1 cut(s)	351
Cac8I	GCNNGC	1 cut(s)	383
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	1 cut(s)	657
CviAII	CATG	4 cut(s)	100, 321, 416, 436
CviJI	RGCY	6 cut(s)	9, 91, 96, 247, 315, 503
CviKI_1	RGCY	6 cut(s)	9, 91, 96, 247, 315, 503
CviQI	GTAC	1 cut(s)	657
DdeI	CTNAG	2 cut(s)	92, 136
DpnI	GATC	1 cut(s)	292
DpnII	GATC	1 cut(s)	290
DriI	GACNNNNNGTC	1 cut(s)	449
Eam1104I	CTCTTC	2 cut(s)	50, 348
Eam1105I	GACNNNNNGTC	1 cut(s)	449
EarI	CTCTTC	2 cut(s)	50, 348
Ecl136II	GAGCTC	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	165, 573
Eco24I	GRGCYC	1 cut(s)	98
Eco32I	GATATC	1 cut(s)	404
Eco53kI	GAGCTC	1 cut(s)	96
EcoICRI	GAGCTC	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	578
EcoRV	GATATC	1 cut(s)	404
EcoT14I	CCWWGG	2 cut(s)	165, 573
EcoT38I	GRGCYC	1 cut(s)	98
ErhI	CCWWGG	2 cut(s)	165, 573
FaeI	CATG	4 cut(s)	103, 324, 419, 439
FatI	CATG	4 cut(s)	99, 320, 415, 435
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	61, 413
FokI	GGATG	5 cut(s)	140, 148, 180, 182, 476
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	2 cut(s)	61, 413
GluI	GCNGC	2 cut(s)	61, 413
HgaI	GACGC	1 cut(s)	485
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	4 cut(s)	103, 324, 419, 439
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	3 cut(s)	178, 439, 667
HphI	GGTGA	2 cut(s)	77, 286
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	3 cut(s)	22, 183, 408
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	3 cut(s)	68, 71, 74
HpyAV	CCTTC	3 cut(s)	7, 257, 337
HpyCH4III	ACNGT	2 cut(s)	74, 208
HpyCH4IV	ACGT	3 cut(s)	66, 224, 376
HpyCH4V	TGCA	6 cut(s)	46, 77, 173, 478, 557, 673
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 253
HpyF3I	CTNAG	2 cut(s)	92, 136
HpySE526I	ACGT	3 cut(s)	66, 224, 376
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	4 cut(s)	103, 324, 419, 439
Kzo9I	GATC	1 cut(s)	290
LguI	GCTCTTC	1 cut(s)	50
LmnI	GCTCC	2 cut(s)	101, 513
LpnPI	CCDG	4 cut(s)	101, 495, 513, 547
LweI	GCATC	1 cut(s)	160
MaeII	ACGT	3 cut(s)	66, 224, 376
MaeIII	GTNAC	3 cut(s)	208, 228, 280
MalI	GATC	1 cut(s)	292
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	1 cut(s)	290
MboII	GAAGA	4 cut(s)	67, 353, 365, 554
MflI	RGATCY	1 cut(s)	290
MhlI	GDGCHC	1 cut(s)	98
MluCI	AATT	4 cut(s)	78, 121, 578, 679
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	1 cut(s)	281
MroXI	GAANNNNTTC	2 cut(s)	345, 596
MseI	TTAA	4 cut(s)	360, 569, 630, 685
MslI	CAYNNNNRTG	1 cut(s)	483
MspA1I	CMGCKG	1 cut(s)	91
Mva1269I	GAATGC	2 cut(s)	516, 673
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	2 cut(s)	140, 253
NdeII	GATC	1 cut(s)	290
NlaIII	CATG	4 cut(s)	103, 324, 419, 439
NlaIV	GGNNCC	2 cut(s)	133, 292
NmuCI	GTSAC	2 cut(s)	208, 280
NruI	TCGCGA	1 cut(s)	351
NspI	RCATGY	1 cut(s)	419
PciSI	GCTCTTC	1 cut(s)	50
PctI	GAATGC	2 cut(s)	516, 673
PdmI	GAANNNNTTC	2 cut(s)	345, 596
PfeI	GAWTC	3 cut(s)	178, 439, 667
PkrI	GCNGC	2 cut(s)	62, 414
PsiI	TTATAA	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	98
Psp1406I	AACGTT	1 cut(s)	224
PspN4I	GGNNCC	2 cut(s)	133, 292
PsuI	RGATCY	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	91
RruI	TCGCGA	1 cut(s)	351
RsaI	GTAC	1 cut(s)	658
RsaNI	GTAC	1 cut(s)	657
RseI	CAYNNNNRTG	1 cut(s)	483
SacI	GAGCTC	1 cut(s)	98
SalI	GTCGAC	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	50
SaqAI	TTAA	4 cut(s)	360, 569, 630, 685
SatI	GCNGC	2 cut(s)	61, 413
Sau3AI	GATC	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	98
SfaNI	GCATC	1 cut(s)	160
SgrDI	CGTCGACG	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	483
Sse9I	AATT	4 cut(s)	78, 121, 578, 679
SsiI	CCGC	2 cut(s)	60, 412
SstI	GAGCTC	1 cut(s)	98
StyI	CCWWGG	2 cut(s)	165, 573
TaaI	ACNGT	2 cut(s)	74, 208
TaiI	ACGT	3 cut(s)	69, 227, 379
TaqI	TCGA	3 cut(s)	53, 69, 442
TasI	AATT	4 cut(s)	78, 121, 578, 679
TauI	GCSGC	2 cut(s)	63, 415
TfiI	GAWTC	3 cut(s)	178, 439, 667
Tru1I	TTAA	4 cut(s)	360, 569, 630, 685
Tru9I	TTAA	4 cut(s)	360, 569, 630, 685
TscAI	CASTG	1 cut(s)	480
TseFI	GTSAC	2 cut(s)	208, 280
Tsp45I	GTSAC	2 cut(s)	208, 280
TspDTI	ATGAA	9 cut(s)	47, 71, 150, 182, 309, 319, 354, 589, 628
TspGWI	ACGGA	1 cut(s)	660
TspRI	CASTG	1 cut(s)	480
XapI	RAATTY	1 cut(s)	578
XceI	RCATGY	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	69
XmnI	GAANNNNTTC	2 cut(s)	345, 596
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.