Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010406

Physical Location & Seq

Genomic Coordinates Reverse (-)

18455681 .. 18458506

Gene Structure 2826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G188100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGATGGGCTGAATGTTTCAGACGTCAACTTGCAAGTCCAACTACATCCATCAAGGAGTAACAATGTCCGCAAAGCAGTCCTACGCGAGCTTAGCTCTCTGCTTTTAAGGTTCAATGAAAAATTTCAGGGTGTCGTATTGGCGTATGAATTCAACATAGATAAGGTTCCAGATATCCTTCCCAGTATGCATCCTTATTTGTATGTCAGACTAAAAGCAAAGTTGTTACTTTTTTCTCCAAAGCCCGATATGCTTTTAGAAGGAAAGGTAGTGAAAGTGAGACAAGAATCAATTCATGTCATTATCCTTGGCTTTTCATCTGCTATTATAACAGACAAGGATATTCGCGAAGAATTTCAGTATAAAACTAAACATGGCAAGGACTTATTTGTTAGCAGATCTCACAAGCGACATGTAATAAAAGCTGGAACCATGATACGCTTATTAGTCAAAAGTGTGGATGAGGAAACATTATGCATTTCTGGTTCTTTGCTTCCAGCTCACACTGGGAGCATTCTCTGGTTGGATAAACATGTGGAAAATGTTTCACTAACGGACGGAATTTGTAGGAGTAATAAGAGGAGGAGAGGAAACGAGGAAGAATCAGTTATGCAAGAGCCTAGTAGAACCAGTGCCGAAGCATATTCTATAGTTGACCATTATATCAAGAAGTCAAAGAAACACAGAGAATCTGCTACGCAAAAGCCTAGTAGGAGCGAAGCATATTCTGCCATTAGTGACCATTCAATCAAGAAGTCAAAGAAACACAGAGAATCTGCTATGCAGGAGCCTAGTAGGAGCGAAGCATATTCTGCCATTAGTGACAATTCGATTAAGAAGTCAAAGAAACACAAAACAAGAGAAGAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

S1 SHS2_Rpb7-N

Protein Analysis

291

Amino Acids

33.07

Weight (kDa)

9.66

Isoelectric Point (pI)

53.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75670 AT1G75670 AT1G75670
fragaria_vesca	FvH4_2g17590
malus_domestica	MD05G1155200.v1.1 MD10G1149500.v1.1
prunus_persica	Prupe.8G188100_v2.0.a1 Prupe.8G188100_v2.0.a1 Prupe.8G188100_v2.0.a1
pyrus_communis	pycom05g14860
rosa_chinensis	RchiOBHm_Chr6g0282531
rosa_laevigata	RLG00000012887
rosa_multiflora	Rmu_sc0000283.1_g000008 Rmu_sc0005697.1_g000028
rosa_roxburghii	Rroxscaffold_7G00186290
rosa_rugosa	Rorug06G0147300
rosa_samantha	Rh6AG260500 Rh6BG263600 Rh6CG262800 Rh6DG254700
rosa_wichuraiana	Rw6G022530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	329
AatII	GACGTC	1 cut(s)	27
AccII	CGCG	2 cut(s)	87, 348
AciI	CCGC	1 cut(s)	70
AcsI	RAATTY	4 cut(s)	122, 149, 353, 561
AcyI	GRCGYC	1 cut(s)	24
AflIII	ACRYGT	2 cut(s)	412, 532
AgsI	TTSAA	3 cut(s)	115, 154, 747
AluBI	AGCT	4 cut(s)	91, 96, 425, 500
AluI	AGCT	4 cut(s)	91, 96, 425, 500
Alw26I	GTCTC	1 cut(s)	274
ApoI	RAATTY	4 cut(s)	122, 149, 353, 561
Asp700I	GAANNNNTTC	3 cut(s)	123, 291, 354
BccI	CCATC	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	3 cut(s)	621, 708, 792
BfmI	CTRYAG	1 cut(s)	648
BglII	AGATCT	1 cut(s)	398
BlpI	GCTNAGC	1 cut(s)	92
BmiI	GGNNCC	3 cut(s)	168, 430, 789
BmrI	ACTGGG	2 cut(s)	177, 516
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	2 cut(s)	177, 516
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
Bpu1102I	GCTNAGC	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	307
Bse1I	ACTGG	3 cut(s)	183, 511, 630
BseDI	CCNNGG	1 cut(s)	307
BseGI	GGATG	4 cut(s)	10, 46, 190, 466
BseNI	ACTGG	3 cut(s)	183, 511, 630
BseRI	GAGGAG	2 cut(s)	595, 598
Bsh1236I	CGCG	2 cut(s)	87, 348
BsmAI	GTCTC	1 cut(s)	274
BsmI	GAATGC	1 cut(s)	513
Bsp143I	GATC	1 cut(s)	398
Bsp1720I	GCTNAGC	1 cut(s)	92
Bsp68I	TCGCGA	1 cut(s)	348
BspACI	CCGC	1 cut(s)	70
BspFNI	CGCG	2 cut(s)	87, 348
BspHI	TCATGA	1 cut(s)	869
BspLI	GGNNCC	3 cut(s)	168, 430, 789
BsrI	ACTGG	3 cut(s)	183, 511, 630
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	1 cut(s)	398
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	307
Bst6I	CTCTTC	1 cut(s)	858
BstACI	GRCGYC	1 cut(s)	24
BstAPI	GCANNNNNTGC	2 cut(s)	728, 812
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	92
BstF5I	GGATG	4 cut(s)	10, 46, 190, 466
BstFNI	CGCG	2 cut(s)	87, 348
BstKTI	GATC	1 cut(s)	401
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	398
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 250, 728, 812
BstNSI	RCATGY	2 cut(s)	416, 536
BstSFI	CTRYAG	1 cut(s)	648
BstUI	CGCG	2 cut(s)	87, 348
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
BtsCI	GGATG	4 cut(s)	10, 46, 190, 466
BtsIMutI	CAGTG	2 cut(s)	504, 637
BtuMI	TCGCGA	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	89
CciI	TCATGA	1 cut(s)	869
CviAII	CATG	6 cut(s)	296, 374, 413, 433, 533, 870
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	1 cut(s)	400
DpnII	GATC	1 cut(s)	398
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
Eco130I	CCWWGG	1 cut(s)	307
Eco32I	GATATC	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	149
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	307
EcoT22I	ATGCAT	2 cut(s)	192, 479
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	6 cut(s)	299, 377, 416, 436, 536, 873
FatI	CATG	6 cut(s)	295, 373, 412, 432, 532, 869
FokI	GGATG	4 cut(s)	17, 33, 177, 473
FspBI	CTAG	3 cut(s)	621, 708, 792
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	6 cut(s)	299, 377, 416, 436, 536, 873
HincII	GTYRAC	2 cut(s)	28, 655
HindII	GTYRAC	2 cut(s)	28, 655
HinfI	GANTC	5 cut(s)	287, 602, 689, 773, 866
Hpy166II	GTNNAC	2 cut(s)	28, 655
Hpy188I	TCNGA	2 cut(s)	22, 209
Hpy188III	TCNNGA	5 cut(s)	170, 347, 667, 751, 870
Hpy8I	GTNNAC	2 cut(s)	28, 655
HpyAV	CCTTC	2 cut(s)	188, 254
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	5 cut(s)	34, 190, 477, 613, 784
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 250, 728, 812
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	6 cut(s)	299, 377, 416, 436, 536, 873
Kzo9I	GATC	1 cut(s)	398
LmnI	GCTCC	4 cut(s)	510, 714, 787, 798
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	3 cut(s)	621, 708, 792
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	4 cut(s)	59, 225, 737, 821
MalI	GATC	1 cut(s)	400
MboI	GATC	1 cut(s)	398
MboII	GAAGA	2 cut(s)	362, 611
MflI	RGATCY	1 cut(s)	398
MluCI	AATT	6 cut(s)	122, 149, 291, 353, 561, 826
MmeI	TCCRAC	2 cut(s)	64, 504
MnlI	CCTC	5 cut(s)	457, 573, 576, 581, 589
Mph1103I	ATGCAT	2 cut(s)	192, 479
MroXI	GAANNNNTTC	3 cut(s)	123, 291, 354
MseI	TTAA	2 cut(s)	107, 834
Mva1269I	GAATGC	1 cut(s)	513
MvnI	CGCG	2 cut(s)	87, 348
MwoI	GCNNNNNNNGC	4 cut(s)	93, 250, 728, 812
NdeII	GATC	1 cut(s)	398
NlaIII	CATG	6 cut(s)	299, 377, 416, 436, 536, 873
NlaIV	GGNNCC	3 cut(s)	168, 430, 789
NmuCI	GTSAC	2 cut(s)	737, 821
NruI	TCGCGA	1 cut(s)	348
NsiI	ATGCAT	2 cut(s)	192, 479
NspI	RCATGY	2 cut(s)	416, 536
PagI	TCATGA	1 cut(s)	869
PciI	ACATGT	2 cut(s)	412, 532
PctI	GAATGC	1 cut(s)	513
PdmI	GAANNNNTTC	3 cut(s)	123, 291, 354
PfeI	GAWTC	4 cut(s)	287, 602, 689, 773
PscI	ACATGT	2 cut(s)	412, 532
PsiI	TTATAA	1 cut(s)	329
PspN4I	GGNNCC	3 cut(s)	168, 430, 789
PsuI	RGATCY	1 cut(s)	398
RruI	TCGCGA	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	107, 834
Sau3AI	GATC	1 cut(s)	398
SetI	ASST	8 cut(s)	27, 93, 98, 113, 168, 270, 427, 502
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	648
Sse9I	AATT	6 cut(s)	122, 149, 291, 353, 561, 826
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	3 cut(s)	621, 708, 792
StyI	CCWWGG	1 cut(s)	307
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	830
TasI	AATT	6 cut(s)	122, 149, 291, 353, 561, 826
TfiI	GAWTC	4 cut(s)	287, 602, 689, 773
Tru1I	TTAA	2 cut(s)	107, 834
Tru9I	TTAA	2 cut(s)	107, 834
TscAI	CASTG	2 cut(s)	511, 637
TseFI	GTSAC	2 cut(s)	737, 821
Tsp45I	GTSAC	2 cut(s)	737, 821
TspDTI	ATGAA	4 cut(s)	132, 162, 284, 306
TspGWI	ACGGA	2 cut(s)	569, 573
TspRI	CASTG	2 cut(s)	511, 637
XapI	RAATTY	4 cut(s)	122, 149, 353, 561
XceI	RCATGY	2 cut(s)	416, 536
XmnI	GAANNNNTTC	3 cut(s)	123, 291, 354
XspI	CTAG	3 cut(s)	621, 708, 792
ZraI	GACGTC	1 cut(s)	25
Zsp2I	ATGCAT	2 cut(s)	192, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.