Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010406

Physical Location & Seq

Genomic Coordinates Reverse (-)

43588722 .. 43591671

Gene Structure 2950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG262800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAGGGCTTGAAGGTTTCCGATACCAATATGAAAGTGTTTCTGCACCCATCGAAGGGCGGCGACATCGACGGTGCAATTCATCACCAGCTGAGCTCCATGATTTTCAAGTTTGATGATAATTTGGATGGTGTCTTAGTTGCTTATAAGTTTGACGTTTCATCCAAGGATGCAAAGATTCTGAATGGTGTTCATCCTTATTTTACTGTGAGCATAAGAGCGACTTTGTTACTTTTCTCTCCAAAGCCAAATATGCTTGTAGAAGGCAAGGTGGTGAAAGTCACCCGAGGATCCATATCTGTCATTGTTCTTGGCTTTTCATGTGCCTTCATAAAAGATGAAGATATTCGCGAAGAGTTTAAGTATAAATATAAACGTGGCAAGCAAGTATATATTAGCAGATATCAGAAGCGGCATGTGATAAAAGTTGGAACCATGATACGACTTTCAGTCAACAGTTTGGATGTGGAGACACTGCACATATATGGTTCTTTGCGTCCAGCTCACACTGGGAGCATTCGCTTTTTAGATAAAAATGTGGAAGATGATGGACTTACAGACAGGAGTAATAAGAGGAGAAGAGAAAATGAGGGGGAGTCAGTTATGCAAGAGCCCAGTACAACAGTTATTCAAGGGCTCAATACCAAAGTAAAGCCTAGTTCAATCGGTACTGAAGCATTTTCTTTCAATAATGACCACTATATCAAGAAGTCAAAGAAACACAAGACAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

S1 SHS2_Rpb7-N

Protein Analysis

244

Amino Acids

27.63

Weight (kDa)

9.63

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75670 AT1G75670 AT1G75670
fragaria_vesca	FvH4_2g17590
malus_domestica	MD05G1155200.v1.1 MD10G1149500.v1.1
prunus_persica	Prupe.8G188100_v2.0.a1 Prupe.8G188100_v2.0.a1 Prupe.8G188100_v2.0.a1
pyrus_communis	pycom05g14860
rosa_chinensis	RchiOBHm_Chr6g0282531
rosa_laevigata	RLG00000012887
rosa_multiflora	Rmu_sc0000283.1_g000008 Rmu_sc0005697.1_g000028
rosa_roxburghii	Rroxscaffold_7G00186290
rosa_rugosa	Rorug06G0147300
rosa_samantha	Rh6AG260500 Rh6BG263600 Rh6CG262800 Rh6DG254700
rosa_wichuraiana	Rw6G022530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
AccII	CGCG	1 cut(s)	351
AciI	CCGC	2 cut(s)	60, 412
AclWI	GGATC	2 cut(s)	285, 298
AcuI	CTGAAG	1 cut(s)	693
AfaI	GTAC	2 cut(s)	619, 670
AfiI	CCNNNNNNNGG	2 cut(s)	55, 56
AgsI	TTSAA	5 cut(s)	13, 109, 632, 663, 688
AhdI	GACNNNNNGTC	1 cut(s)	449
AluBI	AGCT	3 cut(s)	91, 96, 503
AluI	AGCT	3 cut(s)	91, 96, 503
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	2 cut(s)	285, 298
Ama87I	CYCGRG	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	345
AsuHPI	GGTGA	3 cut(s)	77, 274, 286
AvaI	CYCGRG	1 cut(s)	285
BamHI	GGATCC	1 cut(s)	290
BanII	GRGCYC	3 cut(s)	98, 615, 639
Bbv12I	GWGCWC	1 cut(s)	98
BccI	CCATC	3 cut(s)	58, 122, 542
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	1 cut(s)	657
BisI	GCNGC	2 cut(s)	61, 413
BlpI	GCTNAGC	1 cut(s)	92
BlsI	GCNGC	2 cut(s)	62, 414
BmeRI	GACNNNNNGTC	1 cut(s)	449
BmeT110I	CYCGRG	1 cut(s)	285
BmiI	GGNNCC	2 cut(s)	292, 433
BmrI	ACTGGG	2 cut(s)	519, 609
BmsI	GCATC	1 cut(s)	160
BmuI	ACTGGG	2 cut(s)	519, 609
Bpu1102I	GCTNAGC	1 cut(s)	92
BsaBI	GATNNNNATC	1 cut(s)	295
BsaJI	CCNNGG	2 cut(s)	165, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 56
Bse1I	ACTGG	2 cut(s)	514, 615
Bse8I	GATNNNNATC	1 cut(s)	295
BseDI	CCNNGG	2 cut(s)	165, 286
BseGI	GGATG	5 cut(s)	133, 161, 175, 193, 469
BseJI	GATNNNNATC	1 cut(s)	295
BseLI	CCNNNNNNNGG	2 cut(s)	55, 56
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	2 cut(s)	514, 615
BseRI	GAGGAG	1 cut(s)	589
BsgI	GTGCAG	2 cut(s)	29, 461
Bsh1236I	CGCG	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	285
BslI	CCNNNNNNNGG	2 cut(s)	55, 56
BsmAI	GTCTC	1 cut(s)	464
BsmI	GAATGC	1 cut(s)	516
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	3 cut(s)	98, 615, 639
Bsp143I	GATC	1 cut(s)	290
Bsp1720I	GCTNAGC	1 cut(s)	92
Bsp68I	TCGCGA	1 cut(s)	351
BspACI	CCGC	2 cut(s)	60, 412
BspCNI	CTCAG	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	2 cut(s)	292, 433
BspPI	GGATC	2 cut(s)	285, 298
BsrI	ACTGG	2 cut(s)	514, 615
BssECI	CCNNGG	2 cut(s)	165, 286
BssMI	GATC	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	4 cut(s)	74, 208, 458, 625
Bst6I	CTCTTC	2 cut(s)	348, 574
BstC8I	GCNNGC	1 cut(s)	383
BstDEI	CTNAG	2 cut(s)	92, 136
BstF5I	GGATG	5 cut(s)	133, 161, 175, 193, 469
BstFNI	CGCG	1 cut(s)	351
BstKTI	GATC	1 cut(s)	293
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	1 cut(s)	253
BstNSI	RCATGY	1 cut(s)	419
BstUI	CGCG	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BtsCI	GGATG	5 cut(s)	133, 161, 175, 193, 469
BtsI	GCAGTG	1 cut(s)	473
BtsIMutI	CAGTG	2 cut(s)	473, 507
BtuMI	TCGCGA	1 cut(s)	351
Cac8I	GCNNGC	1 cut(s)	383
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	2 cut(s)	618, 669
CviAII	CATG	4 cut(s)	100, 321, 416, 436
CviJI	RGCY	9 cut(s)	9, 91, 96, 247, 315, 503, 613, 637, 655
CviKI_1	RGCY	9 cut(s)	9, 91, 96, 247, 315, 503, 613, 637, 655
CviQI	GTAC	2 cut(s)	618, 669
DdeI	CTNAG	2 cut(s)	92, 136
DpnI	GATC	1 cut(s)	292
DpnII	GATC	1 cut(s)	290
DriI	GACNNNNNGTC	1 cut(s)	449
Eam1104I	CTCTTC	2 cut(s)	348, 574
Eam1105I	GACNNNNNGTC	1 cut(s)	449
EarI	CTCTTC	2 cut(s)	348, 574
Ecl136II	GAGCTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	3 cut(s)	98, 615, 639
Eco32I	GATATC	1 cut(s)	404
Eco53kI	GAGCTC	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	693
Eco88I	CYCGRG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	96
EcoRV	GATATC	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	3 cut(s)	98, 615, 639
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	4 cut(s)	103, 324, 419, 439
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FatI	CATG	4 cut(s)	99, 320, 415, 435
Fnu4HI	GCNGC	2 cut(s)	61, 413
FokI	GGATG	5 cut(s)	140, 148, 180, 182, 476
FriOI	GRGCYC	3 cut(s)	98, 615, 639
Fsp4HI	GCNGC	2 cut(s)	61, 413
FspBI	CTAG	1 cut(s)	657
GluI	GCNGC	2 cut(s)	61, 413
HgaI	GACGC	1 cut(s)	485
Hin1II	CATG	4 cut(s)	103, 324, 419, 439
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	2 cut(s)	178, 596
HphI	GGTGA	3 cut(s)	77, 274, 286
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	3 cut(s)	22, 183, 408
Hpy188III	TCNNGA	2 cut(s)	350, 706
Hpy8I	GTNNAC	1 cut(s)	454
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	4 cut(s)	7, 49, 257, 337
HpyCH4III	ACNGT	4 cut(s)	74, 208, 458, 625
HpyCH4IV	ACGT	2 cut(s)	156, 376
HpyCH4V	TGCA	5 cut(s)	46, 77, 173, 478, 607
HpyF10VI	GCNNNNNNNGC	1 cut(s)	253
HpyF3I	CTNAG	2 cut(s)	92, 136
HpySE526I	ACGT	2 cut(s)	156, 376
Hsp92II	CATG	4 cut(s)	103, 324, 419, 439
Kzo9I	GATC	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	101, 513
LpnPI	CCDG	5 cut(s)	101, 495, 513, 547, 628
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	657
MaeII	ACGT	2 cut(s)	156, 376
MaeIII	GTNAC	2 cut(s)	228, 280
MalI	GATC	1 cut(s)	292
MboI	GATC	1 cut(s)	290
MboII	GAAGA	4 cut(s)	353, 365, 554, 591
MflI	RGATCY	1 cut(s)	290
MhlI	GDGCHC	3 cut(s)	98, 615, 639
MluCI	AATT	2 cut(s)	78, 121
MlyI	GAGTC	1 cut(s)	605
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	3 cut(s)	281, 567, 583
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	1 cut(s)	483
MspA1I	CMGCKG	1 cut(s)	91
Mva1269I	GAATGC	1 cut(s)	516
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	1 cut(s)	253
NdeII	GATC	1 cut(s)	290
NlaIII	CATG	4 cut(s)	103, 324, 419, 439
NlaIV	GGNNCC	2 cut(s)	292, 433
NmuCI	GTSAC	1 cut(s)	280
NruI	TCGCGA	1 cut(s)	351
NspI	RCATGY	1 cut(s)	419
PctI	GAATGC	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	62, 414
PleI	GAGTC	1 cut(s)	604
PpsI	GAGTC	1 cut(s)	604
PsiI	TTATAA	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	292, 433
PsuI	RGATCY	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	91
RruI	TCGCGA	1 cut(s)	351
RsaI	GTAC	2 cut(s)	619, 670
RsaNI	GTAC	2 cut(s)	618, 669
RseI	CAYNNNNRTG	1 cut(s)	483
SacI	GAGCTC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	2 cut(s)	61, 413
Sau3AI	GATC	1 cut(s)	290
SchI	GAGTC	1 cut(s)	605
SduI	GDGCHC	3 cut(s)	98, 615, 639
SetI	ASST	8 cut(s)	18, 93, 98, 159, 273, 379, 505, 734
SfaNI	GCATC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	483
Sse9I	AATT	2 cut(s)	78, 121
SsiI	CCGC	2 cut(s)	60, 412
SspMI	CTAG	1 cut(s)	657
SstI	GAGCTC	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	4 cut(s)	74, 208, 458, 625
TaiI	ACGT	2 cut(s)	159, 379
TaqI	TCGA	2 cut(s)	53, 69
TasI	AATT	2 cut(s)	78, 121
TatI	WGTACW	1 cut(s)	617
TauI	GCSGC	2 cut(s)	63, 415
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	2 cut(s)	480, 514
TseFI	GTSAC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	7 cut(s)	47, 71, 150, 182, 309, 319, 354
TspRI	CASTG	2 cut(s)	480, 514
XceI	RCATGY	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.