Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010406

Physical Location & Seq

Genomic Coordinates Reverse (-)

23679132 .. 23682139

Gene Structure 3008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1149500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGAGGGGCTGAGCGTTTCGGATGCCAATTTGGTTGTGTATTTGCATCCGTCGACGAGCAACAATGTCCACAAAGCAATCCTGCGCGAGCTCAGCTCGATGCTTTTGAGGTACAATGATACATTTGAGGGTATTGTATTGGCTTATGAATTCAACATTTTAGATAAGGACGCAAAGATTCTTCCCGGAGTTCATCCTTATTTTACTGTCAGACTAAAAGCAAAGTTATTACTTTATTCTCCAAAGCCCGATATGCTTGTAGAAGGAAAGGTTGTGAAAGTCACACAAGAATCAATTCATGTCATTATCCTTGGCTTCTCGTCTGCTGTCATAACAGACAGAGATATTCGCGAGGAATTTCAATATAAATCTAAACATGGCAAGCAATTATTTGTTAGCAGATCTCACAAGCGGCATGTAATAAAAGTTGGAACGATGATACGACTATTAGTCAAAAGTGTGGATGAGGAAACACTGTACATTTATGGTTCCTTGCTTCCAGCTCACACAGGAAACATTATCTGGTTGGATAAACAAACTGAAGATACTTCGCTAACAGATGGGAGTGCTAAGAGGAGGAAAGGAAACGATGGAGAATCAGTTATGCAAGAGCCTAGTAGAACCAGTGTTGAAACAGTTTCAGTCAATAATGACCATCATGTCAAGAAGTCGAAGAAACACAAAACACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

SHS2_Rpb7-N

Protein Analysis

231

Amino Acids

26.04

Weight (kDa)

9.3

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75670 AT1G75670 AT1G75670
fragaria_vesca	FvH4_2g17590
malus_domestica	MD05G1155200.v1.1 MD10G1149500.v1.1
prunus_persica	Prupe.8G188100_v2.0.a1 Prupe.8G188100_v2.0.a1 Prupe.8G188100_v2.0.a1
pyrus_communis	pycom05g14860
rosa_chinensis	RchiOBHm_Chr6g0282531
rosa_laevigata	RLG00000012887
rosa_multiflora	Rmu_sc0000283.1_g000008 Rmu_sc0005697.1_g000028
rosa_roxburghii	Rroxscaffold_7G00186290
rosa_rugosa	Rorug06G0147300
rosa_samantha	Rh6AG260500 Rh6BG263600 Rh6CG262800 Rh6DG254700
rosa_wichuraiana	Rw6G022530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	659
AccI	GTMKAC	1 cut(s)	53
AccII	CGCG	2 cut(s)	87, 351
AciI	CCGC	1 cut(s)	412
AcsI	RAATTY	2 cut(s)	149, 356
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	2 cut(s)	113, 479
AgsI	TTSAA	3 cut(s)	154, 362, 632
AhdI	GACNNNNNGTC	1 cut(s)	449
AluBI	AGCT	3 cut(s)	91, 96, 503
AluI	AGCT	3 cut(s)	91, 96, 503
Alw21I	GWGCWC	1 cut(s)	93
ApoI	RAATTY	2 cut(s)	149, 356
Asp700I	GAANNNNTTC	1 cut(s)	294
AspLEI	GCGC	1 cut(s)	87
AsuC2I	CCSGG	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	93
BccI	CCATC	3 cut(s)	554, 584, 663
BcnI	CCSGG	1 cut(s)	186
BfaI	CTAG	1 cut(s)	615
BglII	AGATCT	1 cut(s)	401
BisI	GCNGC	1 cut(s)	413
BlpI	GCTNAGC	2 cut(s)	11, 92
BlsI	GCNGC	1 cut(s)	414
Bme1390I	CCNGG	1 cut(s)	186
BmeRI	GACNNNNNGTC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	490
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	3 cut(s)	13, 55, 90
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
Bpu1102I	GCTNAGC	2 cut(s)	11, 92
BpuMI	CCSGG	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bse1I	ACTGG	1 cut(s)	624
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	4 cut(s)	28, 46, 193, 469
BseMII	CTCAG	1 cut(s)	106
BseNI	ACTGG	1 cut(s)	624
BseRI	GAGGAG	1 cut(s)	589
Bsh1236I	CGCG	2 cut(s)	87, 351
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	1 cut(s)	401
Bsp1720I	GCTNAGC	2 cut(s)	11, 92
Bsp68I	TCGCGA	1 cut(s)	351
BspACI	CCGC	1 cut(s)	412
BspCNI	CTCAG	1 cut(s)	105
BspFNI	CGCG	2 cut(s)	87, 351
BspLI	GGNNCC	1 cut(s)	490
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	624
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	1 cut(s)	401
BssT1I	CCWWGG	1 cut(s)	310
Bst4CI	ACNGT	3 cut(s)	208, 477, 637
BstAUI	TGTACA	1 cut(s)	477
BstC8I	GCNNGC	2 cut(s)	89, 383
BstDEI	CTNAG	3 cut(s)	11, 92, 570
BstF5I	GGATG	4 cut(s)	28, 46, 193, 469
BstFNI	CGCG	2 cut(s)	87, 351
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	1 cut(s)	404
BstMBI	GATC	1 cut(s)	401
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 253
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	184
BstUI	CGCG	2 cut(s)	87, 351
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BtsCI	GGATG	4 cut(s)	28, 46, 193, 469
BtsIMutI	CAGTG	2 cut(s)	473, 631
BtuMI	TCGCGA	1 cut(s)	351
Cac8I	GCNNGC	2 cut(s)	89, 383
CfoI	GCGC	1 cut(s)	87
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	112, 478
CviAII	CATG	4 cut(s)	299, 377, 416, 659
CviJI	RGCY	8 cut(s)	10, 91, 96, 143, 247, 315, 503, 613
CviKI_1	RGCY	8 cut(s)	10, 91, 96, 143, 247, 315, 503, 613
CviQI	GTAC	2 cut(s)	112, 478
DdeI	CTNAG	3 cut(s)	11, 92, 570
DpnI	GATC	1 cut(s)	403
DpnII	GATC	1 cut(s)	401
DrdI	GACNNNNNNGTC	1 cut(s)	659
DriI	GACNNNNNGTC	1 cut(s)	449
DseDI	GACNNNNNNGTC	1 cut(s)	659
Eam1105I	GACNNNNNGTC	1 cut(s)	449
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	93
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	561
EcoICRI	GAGCTC	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	4 cut(s)	302, 380, 419, 662
FatI	CATG	4 cut(s)	298, 376, 415, 658
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	1 cut(s)	413
FokI	GGATG	4 cut(s)	33, 35, 180, 476
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	413
FspBI	CTAG	1 cut(s)	615
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	1 cut(s)	413
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	4 cut(s)	302, 380, 419, 662
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	3 cut(s)	178, 290, 596
HpaII	CCGG	1 cut(s)	186
Hpy166II	GTNNAC	2 cut(s)	54, 70
Hpy188I	TCNGA	2 cut(s)	22, 212
Hpy188III	TCNNGA	2 cut(s)	350, 664
Hpy8I	GTNNAC	2 cut(s)	54, 70
Hpy99I	CGWCG	2 cut(s)	55, 58
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	3 cut(s)	208, 477, 637
HpyCH4V	TGCA	2 cut(s)	46, 607
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 253
HpyF3I	CTNAG	3 cut(s)	11, 92, 570
Hsp92II	CATG	4 cut(s)	302, 380, 419, 662
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	401
LpnPI	CCDG	6 cut(s)	95, 199, 495, 508, 513, 637
LweI	GCATC	3 cut(s)	13, 55, 90
MaeI	CTAG	1 cut(s)	615
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	1 cut(s)	403
MboI	GATC	1 cut(s)	401
MboII	GAAGA	3 cut(s)	173, 554, 685
MflI	RGATCY	1 cut(s)	401
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	5 cut(s)	28, 149, 294, 356, 386
MmeI	TCCRAC	2 cut(s)	409, 507
MnlI	CCTC	6 cut(s)	102, 121, 346, 460, 567, 570
MroXI	GAANNNNTTC	1 cut(s)	294
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	186
MvnI	CGCG	2 cut(s)	87, 351
MwoI	GCNNNNNNNGC	2 cut(s)	93, 253
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	401
NlaIII	CATG	4 cut(s)	302, 380, 419, 662
NlaIV	GGNNCC	1 cut(s)	490
NmuCI	GTSAC	1 cut(s)	280
NruI	TCGCGA	1 cut(s)	351
NspI	RCATGY	1 cut(s)	419
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	3 cut(s)	178, 290, 596
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	414
Psp124BI	GAGCTC	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	401
RruI	TCGCGA	1 cut(s)	351
RsaI	GTAC	2 cut(s)	113, 479
RsaNI	GTAC	2 cut(s)	112, 478
SacI	GAGCTC	1 cut(s)	93
SalI	GTCGAC	1 cut(s)	52
SatI	GCNGC	1 cut(s)	413
Sau3AI	GATC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	5 cut(s)	93, 98, 113, 273, 505
SfaNI	GCATC	3 cut(s)	13, 55, 90
SgrDI	CGTCGACG	1 cut(s)	52
Sse9I	AATT	5 cut(s)	28, 149, 294, 356, 386
SsiI	CCGC	1 cut(s)	412
SspMI	CTAG	1 cut(s)	615
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	3 cut(s)	208, 477, 637
TaqI	TCGA	3 cut(s)	53, 98, 671
TasI	AATT	5 cut(s)	28, 149, 294, 356, 386
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	1 cut(s)	415
TfiI	GAWTC	3 cut(s)	178, 290, 596
TscAI	CASTG	2 cut(s)	480, 631
TseFI	GTSAC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	3 cut(s)	162, 182, 287
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	2 cut(s)	480, 631
XapI	RAATTY	2 cut(s)	149, 356
XceI	RCATGY	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.