Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010406

Physical Location & Seq

Genomic Coordinates Reverse (-)

15120940 .. 15123804

Gene Structure 2865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGAGGGGTTGAGGGTTTCCGATACAAATCTCAAAGTGTTCTTACACCCATCGAAGAGCGGCGACGTCGACGGCGCAATTCATCAAGTGCTGAGCTCCATGATTTTCAAGTTTGATGATACTTTGGATGGTGCGTTAGTTGCTTATAGGTTTGACATTTCATCTAAGGATGCAAAGATTCTGAATGGGATTCATCCTTATTTTGCTGTGAGCCTAAGAGCAAAGCTGTTACTTTTCTCTCCAAAGCCAAATATGCTTGTAGAAGGGAAGGTGGTGAAACTCACACGAGGATCCATTTCTGTCATTGTGCTTGGCTTTTCGTGTGCTTTCATAAAAGACGAAGATATTCGCGAAGAGTTTAAATATAAAAATAAACGTGGCAAGCAAGTATATATTAGCAGATATCAGAAGCGACATGTGATAAAAGTTGGAACCATGATACGACTCTCAGTCAACAGTATGGATGTGGATACGCTGCACATATATGGCTCTTTGCGTCCGGCTGACACAGGGAGCATTCGGTTTTTAGATAAAGACATGGAAGATGATGCGCTTACAGACAGGAGTAAGAGGAGAAGAGAAAATGAGGGGGAGTCAGTTATGCAAGAGCCCAGTACAACAGTTATTCAAGGGCTTAATACAAAAGTTAAGGAAGGGCCTAGTTCAACTGGTACCGAAGCATTGTCTTACGATAATGACCAGTATATCAAGAAGTCAAAGAAGCACAAGACAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

S1 SHS2_Rpb7-N

Protein Analysis

246

Amino Acids

27.65

Weight (kDa)

9.45

Isoelectric Point (pI)

28.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75670 AT1G75670 AT1G75670
fragaria_vesca	FvH4_2g17590
malus_domestica	MD05G1155200.v1.1 MD10G1149500.v1.1
prunus_persica	Prupe.8G188100_v2.0.a1 Prupe.8G188100_v2.0.a1 Prupe.8G188100_v2.0.a1
pyrus_communis	pycom05g14860
rosa_chinensis	RchiOBHm_Chr6g0282531
rosa_laevigata	RLG00000012887
rosa_multiflora	Rmu_sc0000283.1_g000008 Rmu_sc0005697.1_g000028
rosa_roxburghii	Rroxscaffold_7G00186290
rosa_rugosa	Rorug06G0147300
rosa_samantha	Rh6AG260500 Rh6BG263600 Rh6CG262800 Rh6DG254700
rosa_wichuraiana	Rw6G022530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	69
Acc65I	GGTACC	1 cut(s)	671
AccB1I	GGYRCC	1 cut(s)	671
AccBSI	CCGCTC	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	1 cut(s)	351
AciI	CCGC	1 cut(s)	60
AclWI	GGATC	2 cut(s)	285, 298
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	2 cut(s)	616, 673
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	3 cut(s)	109, 629, 666
AhdI	GACNNNNNGTC	1 cut(s)	449
AluBI	AGCT	2 cut(s)	96, 226
AluI	AGCT	2 cut(s)	96, 226
Alw21I	GWGCWC	1 cut(s)	98
AlwI	GGATC	2 cut(s)	285, 298
AoxI	GGCC	1 cut(s)	656
ApeKI	GCWGC	1 cut(s)	475
Asp700I	GAANNNNTTC	1 cut(s)	345
Asp718I	GGTACC	1 cut(s)	671
AspLEI	GCGC	2 cut(s)	77, 553
AspS9I	GGNCC	1 cut(s)	656
AsuHPI	GGTGA	1 cut(s)	286
BamHI	GGATCC	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	671
BanII	GRGCYC	2 cut(s)	98, 612
BauI	CACGAG	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	2 cut(s)	58, 122
BceAI	ACGGC	1 cut(s)	88
BciVI	GTATCC	1 cut(s)	463
BfaI	CTAG	1 cut(s)	660
BfuI	GTATCC	1 cut(s)	463
BisI	GCNGC	2 cut(s)	61, 476
BlpI	GCTNAGC	1 cut(s)	92
BlsI	GCNGC	2 cut(s)	62, 477
BmeRI	GACNNNNNGTC	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	3 cut(s)	292, 433, 673
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	2 cut(s)	160, 538
BmuI	ACTGGG	1 cut(s)	606
Bpu1102I	GCTNAGC	1 cut(s)	92
BsaBI	GATNNNNATC	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	66
Bse1I	ACTGG	3 cut(s)	612, 673, 700
Bse8I	GATNNNNATC	1 cut(s)	27
BseGI	GGATG	4 cut(s)	133, 175, 193, 469
BseJI	GATNNNNATC	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	83, 462
BseNI	ACTGG	3 cut(s)	612, 673, 700
BseRI	GAGGAG	1 cut(s)	586
BseXI	GCAGC	1 cut(s)	462
BsgI	GTGCAG	1 cut(s)	461
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	658
BshNI	GGYRCC	1 cut(s)	671
BsiHKAI	GWGCWC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	516
BsnI	GGCC	1 cut(s)	658
Bsp1286I	GDGCHC	2 cut(s)	98, 612
Bsp143I	GATC	1 cut(s)	290
Bsp1720I	GCTNAGC	1 cut(s)	92
Bsp68I	TCGCGA	1 cut(s)	351
BspACI	CCGC	1 cut(s)	60
BspANI	GGCC	1 cut(s)	658
BspCNI	CTCAG	2 cut(s)	84, 461
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	3 cut(s)	292, 433, 673
BspPI	GGATC	2 cut(s)	285, 298
BspQI	GCTCTTC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	671
BsrBI	CCGCTC	1 cut(s)	60
BsrI	ACTGG	3 cut(s)	612, 673, 700
BssMI	GATC	1 cut(s)	290
BssNI	GRCGYC	1 cut(s)	66
BssSI	CACGAG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	458, 622
Bst6I	CTCTTC	3 cut(s)	50, 348, 571
BstACI	GRCGYC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	383
BstDEI	CTNAG	4 cut(s)	92, 165, 215, 448
BstF5I	GGATG	4 cut(s)	133, 175, 193, 469
BstFNI	CGCG	1 cut(s)	351
BstHHI	GCGC	2 cut(s)	77, 553
BstKTI	GATC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 253
BstNSI	RCATGY	1 cut(s)	419
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	462
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BsuI	GTATCC	1 cut(s)	463
BsuRI	GGCC	1 cut(s)	658
BtsCI	GGATG	4 cut(s)	133, 175, 193, 469
BtuMI	TCGCGA	1 cut(s)	351
Cac8I	GCNNGC	1 cut(s)	383
CfoI	GCGC	2 cut(s)	77, 553
Cfr13I	GGNCC	1 cut(s)	656
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	2 cut(s)	615, 672
CviAII	CATG	4 cut(s)	100, 416, 436, 538
CviQI	GTAC	2 cut(s)	615, 672
DdeI	CTNAG	4 cut(s)	92, 165, 215, 448
DpnI	GATC	1 cut(s)	292
DpnII	GATC	1 cut(s)	290
DraI	TTTAAA	1 cut(s)	361
DriI	GACNNNNNGTC	1 cut(s)	449
Eam1104I	CTCTTC	3 cut(s)	50, 348, 571
Eam1105I	GACNNNNNGTC	1 cut(s)	449
EarI	CTCTTC	3 cut(s)	50, 348, 571
Ecl136II	GAGCTC	1 cut(s)	96
Eco24I	GRGCYC	2 cut(s)	98, 612
Eco32I	GATATC	1 cut(s)	404
Eco53kI	GAGCTC	1 cut(s)	96
EcoICRI	GAGCTC	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	656
EcoRV	GATATC	1 cut(s)	404
EcoT38I	GRGCYC	2 cut(s)	98, 612
FaeI	CATG	4 cut(s)	103, 419, 439, 541
FatI	CATG	4 cut(s)	99, 415, 435, 537
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	61, 476
FokI	GGATG	4 cut(s)	140, 180, 182, 476
FriOI	GRGCYC	2 cut(s)	98, 612
Fsp4HI	GCNGC	2 cut(s)	61, 476
FspBI	CTAG	1 cut(s)	660
GlaI	GCGC	2 cut(s)	76, 552
GluI	GCNGC	2 cut(s)	61, 476
HaeIII	GGCC	1 cut(s)	658
HapII	CCGG	1 cut(s)	500
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	2 cut(s)	77, 553
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	4 cut(s)	103, 419, 439, 541
Hin6I	GCGC	2 cut(s)	75, 551
HinP1I	GCGC	2 cut(s)	75, 551
HincII	GTYRAC	2 cut(s)	70, 454
HindII	GTYRAC	2 cut(s)	70, 454
HinfI	GANTC	4 cut(s)	178, 190, 444, 593
HpaII	CCGG	1 cut(s)	500
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	2 cut(s)	70, 454
Hpy188I	TCNGA	3 cut(s)	22, 183, 408
Hpy188III	TCNNGA	2 cut(s)	350, 709
Hpy8I	GTNNAC	2 cut(s)	70, 454
Hpy99I	CGWCG	3 cut(s)	68, 71, 74
HpyAV	CCTTC	3 cut(s)	257, 262, 647
HpyCH4III	ACNGT	2 cut(s)	458, 622
HpyCH4IV	ACGT	2 cut(s)	66, 376
HpyCH4V	TGCA	3 cut(s)	173, 478, 604
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 253
HpyF3I	CTNAG	4 cut(s)	92, 165, 215, 448
HpySE526I	ACGT	2 cut(s)	66, 376
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	4 cut(s)	103, 419, 439, 541
HspAI	GCGC	2 cut(s)	75, 551
KpnI	GGTACC	1 cut(s)	675
Kzo9I	GATC	1 cut(s)	290
LguI	GCTCTTC	1 cut(s)	50
LmnI	GCTCC	2 cut(s)	101, 513
LpnPI	CCDG	6 cut(s)	495, 513, 547, 625, 654, 713
Lsp1109I	GCAGC	1 cut(s)	462
LweI	GCATC	2 cut(s)	160, 538
MaeI	CTAG	1 cut(s)	660
MaeII	ACGT	2 cut(s)	66, 376
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	1 cut(s)	292
MbiI	CCGCTC	1 cut(s)	60
MboI	GATC	1 cut(s)	290
MboII	GAAGA	5 cut(s)	67, 353, 365, 554, 588
MflI	RGATCY	1 cut(s)	290
MhlI	GDGCHC	2 cut(s)	98, 612
MluCI	AATT	1 cut(s)	78
MlyI	GAGTC	2 cut(s)	438, 602
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	4 cut(s)	6, 281, 564, 580
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	3 cut(s)	360, 636, 648
MslI	CAYNNNNRTG	1 cut(s)	483
MspI	CCGG	1 cut(s)	500
Mva1269I	GAATGC	1 cut(s)	516
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	2 cut(s)	140, 253
NdeII	GATC	1 cut(s)	290
NlaIII	CATG	4 cut(s)	103, 419, 439, 541
NlaIV	GGNNCC	3 cut(s)	292, 433, 673
NruI	TCGCGA	1 cut(s)	351
NspI	RCATGY	1 cut(s)	419
PciI	ACATGT	1 cut(s)	415
PciSI	GCTCTTC	1 cut(s)	50
PctI	GAATGC	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	178, 190
PkrI	GCNGC	2 cut(s)	62, 477
PleI	GAGTC	2 cut(s)	438, 601
PpsI	GAGTC	2 cut(s)	438, 601
PscI	ACATGT	1 cut(s)	415
Psp124BI	GAGCTC	1 cut(s)	98
PspN4I	GGNNCC	3 cut(s)	292, 433, 673
PspPI	GGNCC	1 cut(s)	656
PsuI	RGATCY	1 cut(s)	290
RruI	TCGCGA	1 cut(s)	351
RsaI	GTAC	2 cut(s)	616, 673
RsaNI	GTAC	2 cut(s)	615, 672
RseI	CAYNNNNRTG	1 cut(s)	483
SacI	GAGCTC	1 cut(s)	98
SalI	GTCGAC	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	50
SaqAI	TTAA	3 cut(s)	360, 636, 648
SatI	GCNGC	2 cut(s)	61, 476
Sau3AI	GATC	1 cut(s)	290
Sau96I	GGNCC	1 cut(s)	656
SchI	GAGTC	2 cut(s)	438, 602
SduI	GDGCHC	2 cut(s)	98, 612
SetI	ASST	6 cut(s)	69, 98, 152, 228, 273, 379
SfaNI	GCATC	2 cut(s)	160, 538
SgrDI	CGTCGACG	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	483
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	1 cut(s)	60
SspMI	CTAG	1 cut(s)	660
SstI	GAGCTC	1 cut(s)	98
TaaI	ACNGT	2 cut(s)	458, 622
TaiI	ACGT	2 cut(s)	69, 379
TaqI	TCGA	2 cut(s)	53, 69
TasI	AATT	1 cut(s)	78
TatI	WGTACW	1 cut(s)	614
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	2 cut(s)	178, 190
Tru1I	TTAA	3 cut(s)	360, 636, 648
Tru9I	TTAA	3 cut(s)	360, 636, 648
TseI	GCWGC	1 cut(s)	475
TspDTI	ATGAA	4 cut(s)	71, 150, 182, 319
XceI	RCATGY	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	1 cut(s)	660
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.