Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010406

Physical Location & Seq

Genomic Coordinates Reverse (-)

18456186 .. 18458593

Gene Structure 2408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g14860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCTTTTGAGGTACAATGATATATTTGAGGGTATTGTATTGGCTTATGAATTCAACATCTTAGATAAGGAAGCAAAGATTCTTCCCGGTGTTCATCCTTATTTTACTGTCAGGCTAAAAGCAAAGTTATTACTTTATTCTCCAAAGTCCGATATGCTTGTAGAAGGAAAGGTTGTGAAAGTCAAACAAGAATCAATTCATGTCATTATTCTTGGCTTCTCATCTGCCGTCATAACAGACAAAGATATTCGCGAAGAATTTCGATATAAATCTAAACATGGCAAGCAATTATTTGTGAGCAGATCCCACAAGCGGCATGTAATTAAAGTTGGGACCATGATACGACTATTGGTCAAAAGTGTGGATGAGGAAACACTGTACATTTATGGTTCCTTGCTTCCGGCTCACACAGGAAACATTCTCTGGTTGGATAAACAAATGGAAGATACTTCACTAACGGATGGGAGTGCTAAGAGGAGGAAGGGAAACGATGGAGAATCAGTTCTGCAAGAGCCTAGTAGAACCAGTGCCGAAGCAGTTTCAGTCAATAATGACCATCATGTCAAGAAGTCAAGGAAACACAAAACACGTGAAGAGTCGTGTTTTCAGGTGATATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 map00230 map00240 map01100 map03020

Pfam Domains

Protein Families

SHS2_Rpb7-N

Protein Analysis

207

Amino Acids

23.61

Weight (kDa)

9.44

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75670 AT1G75670 AT1G75670
fragaria_vesca	FvH4_2g17590
malus_domestica	MD05G1155200.v1.1 MD10G1149500.v1.1
prunus_persica	Prupe.8G188100_v2.0.a1 Prupe.8G188100_v2.0.a1 Prupe.8G188100_v2.0.a1
pyrus_communis	pycom05g14860
rosa_chinensis	RchiOBHm_Chr6g0282531
rosa_laevigata	RLG00000012887
rosa_multiflora	Rmu_sc0000283.1_g000008 Rmu_sc0005697.1_g000028
rosa_roxburghii	Rroxscaffold_7G00186290
rosa_rugosa	Rorug06G0147300
rosa_samantha	Rh6AG260500 Rh6BG263600 Rh6CG262800 Rh6DG254700
rosa_wichuraiana	Rw6G022530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	560
AccII	CGCG	1 cut(s)	252
AciI	CCGC	1 cut(s)	313
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	50, 257
AcvI	CACGTG	1 cut(s)	590
AfaI	GTAC	2 cut(s)	14, 380
AfiI	CCNNNNNNNGG	1 cut(s)	312
AflIII	ACRYGT	1 cut(s)	587
AgsI	TTSAA	1 cut(s)	55
AhdI	GACNNNNNGTC	1 cut(s)	350
AloI	GAACNNNNNNTCC	2 cut(s)	486, 518
AlwI	GGATC	1 cut(s)	297
ApoI	RAATTY	2 cut(s)	50, 257
Asp700I	GAANNNNTTC	3 cut(s)	195, 258, 501
AspS9I	GGNCC	1 cut(s)	333
AsuC2I	CCSGG	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	333
BbrPI	CACGTG	1 cut(s)	590
BccI	CCATC	3 cut(s)	455, 485, 564
BceAI	ACGGC	1 cut(s)	212
BcnI	CCSGG	1 cut(s)	87
BfaI	CTAG	1 cut(s)	516
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	333
BmeRI	GACNNNNNGTC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	2 cut(s)	334, 391
BmrFI	CCNGG	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	87
BsaAI	YACGTR	1 cut(s)	590
BsaBI	GATNNNNATC	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	525
Bse8I	GATNNNNATC	1 cut(s)	268
BseGI	GGATG	3 cut(s)	94, 370, 466
BseJI	GATNNNNATC	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	525
BseRI	GAGGAG	1 cut(s)	490
Bsh1236I	CGCG	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	87, 401
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	346
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	1 cut(s)	302
Bsp68I	TCGCGA	1 cut(s)	252
BspACI	CCGC	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	252
BspLI	GGNNCC	2 cut(s)	334, 391
BspPI	GGATC	1 cut(s)	297
BsrGI	TGTACA	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	525
BssMI	GATC	1 cut(s)	302
Bst4CI	ACNGT	2 cut(s)	109, 378
Bst6I	CTCTTC	1 cut(s)	588
BstAUI	TGTACA	1 cut(s)	378
BstBAI	YACGTR	1 cut(s)	590
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	2 cut(s)	61, 471
BstF5I	GGATG	3 cut(s)	94, 370, 466
BstFNI	CGCG	1 cut(s)	252
BstKTI	GATC	1 cut(s)	305
BstMBI	GATC	1 cut(s)	302
BstNSI	RCATGY	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	85
BstUI	CGCG	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BtsCI	GGATG	3 cut(s)	94, 370, 466
BtsIMutI	CAGTG	2 cut(s)	374, 532
BtuMI	TCGCGA	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	333
Csp6I	GTAC	2 cut(s)	13, 379
CviAII	CATG	5 cut(s)	200, 278, 317, 337, 560
CviJI	RGCY	5 cut(s)	44, 115, 216, 404, 514
CviKI_1	RGCY	5 cut(s)	44, 115, 216, 404, 514
CviQI	GTAC	2 cut(s)	13, 379
DdeI	CTNAG	2 cut(s)	61, 471
DpnI	GATC	1 cut(s)	304
DpnII	GATC	1 cut(s)	302
DrdI	GACNNNNNNGTC	1 cut(s)	560
DriI	GACNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	560
Eam1104I	CTCTTC	1 cut(s)	588
Eam1105I	GACNNNNNGTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	588
Eco47I	GGWCC	1 cut(s)	333
Eco72I	CACGTG	1 cut(s)	590
EcoRI	GAATTC	1 cut(s)	50
FaeI	CATG	5 cut(s)	203, 281, 320, 340, 563
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	5 cut(s)	199, 277, 316, 336, 559
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	3 cut(s)	81, 377, 473
Fsp4HI	GCNGC	1 cut(s)	314
FspBI	CTAG	1 cut(s)	516
GluI	GCNGC	1 cut(s)	314
HapII	CCGG	2 cut(s)	87, 401
Hin1II	CATG	5 cut(s)	203, 281, 320, 340, 563
HinfI	GANTC	4 cut(s)	79, 191, 497, 596
HpaII	CCGG	2 cut(s)	87, 401
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	2 cut(s)	251, 565
HpyAV	CCTTC	2 cut(s)	158, 475
HpyCH4III	ACNGT	2 cut(s)	109, 378
HpyCH4IV	ACGT	1 cut(s)	589
HpyCH4V	TGCA	1 cut(s)	508
HpyF3I	CTNAG	2 cut(s)	61, 471
HpySE526I	ACGT	1 cut(s)	589
Hsp92II	CATG	5 cut(s)	203, 281, 320, 340, 563
Kzo9I	GATC	1 cut(s)	302
LpnPI	CCDG	7 cut(s)	97, 100, 396, 409, 414, 538, 593
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	1 cut(s)	589
MalI	GATC	1 cut(s)	304
MboI	GATC	1 cut(s)	302
MboII	GAAGA	4 cut(s)	74, 266, 455, 605
MflI	RGATCY	1 cut(s)	302
MluCI	AATT	5 cut(s)	50, 195, 257, 287, 321
MlyI	GAGTC	1 cut(s)	605
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	5 cut(s)	3, 22, 361, 468, 471
MroXI	GAANNNNTTC	3 cut(s)	195, 258, 501
MseI	TTAA	1 cut(s)	324
MspI	CCGG	2 cut(s)	87, 401
MspR9I	CCNGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	252
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	1 cut(s)	302
NlaIII	CATG	5 cut(s)	203, 281, 320, 340, 563
NlaIV	GGNNCC	2 cut(s)	334, 391
NruI	TCGCGA	1 cut(s)	252
NspI	RCATGY	1 cut(s)	320
PdmI	GAANNNNTTC	3 cut(s)	195, 258, 501
PfeI	GAWTC	3 cut(s)	79, 191, 497
PkrI	GCNGC	1 cut(s)	315
PleI	GAGTC	1 cut(s)	604
PmaCI	CACGTG	1 cut(s)	590
PmlI	CACGTG	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	604
Ppu21I	YACGTR	1 cut(s)	590
PspCI	CACGTG	1 cut(s)	590
PspN4I	GGNNCC	2 cut(s)	334, 391
PspPI	GGNCC	1 cut(s)	333
PsuI	RGATCY	1 cut(s)	302
RruI	TCGCGA	1 cut(s)	252
RsaI	GTAC	2 cut(s)	14, 380
RsaNI	GTAC	2 cut(s)	13, 379
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	1 cut(s)	302
Sau96I	GGNCC	1 cut(s)	333
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	4 cut(s)	14, 174, 592, 612
SinI	GGWCC	1 cut(s)	333
Sse9I	AATT	5 cut(s)	50, 195, 257, 287, 321
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	1 cut(s)	516
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	109, 378
TaiI	ACGT	1 cut(s)	592
TaqI	TCGA	1 cut(s)	262
TasI	AATT	5 cut(s)	50, 195, 257, 287, 321
TatI	WGTACW	1 cut(s)	378
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	3 cut(s)	79, 191, 497
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	381, 532
TspDTI	ATGAA	3 cut(s)	63, 83, 188
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	2 cut(s)	381, 532
VpaK11BI	GGWCC	1 cut(s)	333
XapI	RAATTY	2 cut(s)	50, 257
XceI	RCATGY	1 cut(s)	320
XmnI	GAANNNNTTC	3 cut(s)	195, 258, 501
XspI	CTAG	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.