AT1G75717

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017927
Physical Location & Seq
Forward (+)
28433919 .. 28434261
343 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G75717.1

Sequence Viewer

Length: 285 bp
ATGAAGCTCTTCCACAAATTAGGAAAGATCCTCATGAGGCTCATTGATTTCACTCTTCATTCCTCCTCTCGCCGGCAGAAGAAGAACAACTCCCGCTCCGGCGATGGAGAAAGGTTTGAGCCGCCGAAGATTTCGTGTAGTAGTTCGTACTATTCGTCTCACGTACACTACAGTGAAGCTATCGCAGATTGCATAGAGTTTTTCAACAAGTCTTCTGCTATGTCTTGTGAAGATCATGAAGCTCGCCTTGTTAACAATATCGATCGTGACTGTTATTACGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.93

Weight (kDa)

8.38

Isoelectric Point (pI)

74.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017927)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75717
malus_domestica MD15G1013100.v1.1
prunus_persica Prupe.1G366200_v2.0.a1
rosa_laevigata RLG00000011140
rosa_roxburghii Rroxscaffold_1G00056990 Rroxscaffold_7G00165350
rosa_rugosa Rorug06G0316700
rosa_samantha Rh6AG430100 Rh6CG442600 Rh6DG429300
rosa_wichuraiana Rw6G037250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 96
AciI CCGC 2 cut(s) 94, 122
AclWI GGATC 1 cut(s) 22
AfaI GTAC 2 cut(s) 149, 165
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 1 cut(s) 205
AleI CACNNNNGTG 1 cut(s) 171
AluBI AGCT 3 cut(s) 7, 179, 242
AluI AGCT 3 cut(s) 7, 179, 242
Alw26I GTCTC 1 cut(s) 162
AlwI GGATC 1 cut(s) 22
Asp700I GAANNNNTTC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 204
BccI CCATC 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 169
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
BpiI GAAGAC 1 cut(s) 204
Bsa29I ATCGAT 1 cut(s) 261
BsaAI YACGTR 1 cut(s) 163
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse118I RCCGGY 1 cut(s) 72
BseCI ATCGAT 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 55
Bsh1285I CGRYCG 1 cut(s) 265
BshVI ATCGAT 1 cut(s) 261
BsiEI CGRYCG 1 cut(s) 265
BsiSI CCGG 2 cut(s) 73, 99
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 162
BsmBI CGTCTC 1 cut(s) 162
Bsp143I GATC 3 cut(s) 27, 232, 262
BspACI CCGC 2 cut(s) 94, 122
BspDI ATCGAT 1 cut(s) 261
BspHI TCATGA 2 cut(s) 33, 235
BspPI GGATC 1 cut(s) 22
BspQI GCTCTTC 1 cut(s) 14
BsrBI CCGCTC 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 72
BssMI GATC 3 cut(s) 27, 232, 262
Bst4CI ACNGT 2 cut(s) 173, 272
Bst6I CTCTTC 2 cut(s) 14, 60
BstBAI YACGTR 1 cut(s) 163
BstC8I GCNNGC 2 cut(s) 74, 244
BstKTI GATC 3 cut(s) 30, 235, 265
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 3 cut(s) 27, 232, 262
BstMCI CGRYCG 1 cut(s) 265
BstSFI CTRYAG 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
Bsu15I ATCGAT 1 cut(s) 261
BsuTUI ATCGAT 1 cut(s) 261
BtgZI GCGATG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 2 cut(s) 74, 244
CciI TCATGA 2 cut(s) 33, 235
Cfr10I RCCGGY 1 cut(s) 72
ClaI ATCGAT 1 cut(s) 261
Csp6I GTAC 2 cut(s) 148, 164
CviAII CATG 2 cut(s) 34, 236
CviJI RGCY 5 cut(s) 7, 40, 121, 179, 242
CviKI_1 RGCY 5 cut(s) 7, 40, 121, 179, 242
CviQI GTAC 2 cut(s) 148, 164
DpnI GATC 3 cut(s) 29, 234, 264
DpnII GATC 3 cut(s) 27, 232, 262
Eam1104I CTCTTC 2 cut(s) 14, 60
EarI CTCTTC 2 cut(s) 14, 60
Esp3I CGTCTC 1 cut(s) 162
FaeI CATG 2 cut(s) 37, 239
FaiI YATR 4 cut(s) 35, 194, 221, 237
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FatI CATG 2 cut(s) 33, 235
FauI CCCGC 1 cut(s) 101
Fnu4HI GCNGC 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 122
HapII CCGG 2 cut(s) 73, 99
Hin1II CATG 2 cut(s) 37, 239
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HpaI GTTAAC 1 cut(s) 253
HpaII CCGG 2 cut(s) 73, 99
Hpy166II GTNNAC 2 cut(s) 166, 253
Hpy188III TCNNGA 3 cut(s) 34, 236, 266
Hpy8I GTNNAC 2 cut(s) 166, 253
HpyCH4III ACNGT 2 cut(s) 173, 272
HpyCH4IV ACGT 2 cut(s) 162, 279
HpyCH4V TGCA 1 cut(s) 192
HpySE526I ACGT 2 cut(s) 162, 279
Hsp92II CATG 2 cut(s) 37, 239
KroI GCCGGC 1 cut(s) 72
KroNI GCCGGC 1 cut(s) 74
KspAI GTTAAC 1 cut(s) 253
Kzo9I GATC 3 cut(s) 27, 232, 262
LguI GCTCTTC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 2 cut(s) 86, 112
MaeII ACGT 2 cut(s) 162, 279
MaeIII GTNAC 1 cut(s) 266
MalI GATC 3 cut(s) 29, 234, 264
MbiI CCGCTC 1 cut(s) 96
MboI GATC 3 cut(s) 27, 232, 262
MboII GAAGA 6 cut(s) 47, 91, 94, 139, 204, 242
MflI RGATCY 1 cut(s) 27
MluCI AATT 1 cut(s) 17
MnlI CCTC 4 cut(s) 30, 41, 73, 76
MroNI GCCGGC 1 cut(s) 72
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 171
MspI CCGG 2 cut(s) 73, 99
NaeI GCCGGC 1 cut(s) 74
NdeII GATC 3 cut(s) 27, 232, 262
NgoMIV GCCGGC 1 cut(s) 72
NlaIII CATG 2 cut(s) 37, 239
NmuCI GTSAC 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 171
PagI TCATGA 2 cut(s) 33, 235
PciSI GCTCTTC 1 cut(s) 14
PcsI WCGNNNNNNNCGW 1 cut(s) 152
PdiI GCCGGC 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 123
Ple19I CGATCG 1 cut(s) 265
Ppu21I YACGTR 1 cut(s) 163
PsuI RGATCY 1 cut(s) 27
PvuI CGATCG 1 cut(s) 265
RsaI GTAC 2 cut(s) 149, 165
RsaNI GTAC 2 cut(s) 148, 164
RseI CAYNNNNRTG 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 1 cut(s) 122
Sau3AI GATC 3 cut(s) 27, 232, 262
SetI ASST 6 cut(s) 9, 116, 165, 181, 244, 282
SfcI CTRYAG 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 1 cut(s) 17
SsiI CCGC 2 cut(s) 94, 122
TaaI ACNGT 2 cut(s) 173, 272
TaiI ACGT 2 cut(s) 165, 282
TaqI TCGA 1 cut(s) 261
TasI AATT 1 cut(s) 17
TauI GCSGC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 3 cut(s) 17, 47, 252
TspRI CASTG 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.