Rroxscaffold_1G00056990

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
78978811 .. 78982423
3613 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00056990.1

Sequence Viewer

Length: 168 bp
ATGGATGATGACTTCTATTTTAGTGTGAATATGCCATTCGGGAAAGGTCTCCGTAAACTTTACTGGCTCATTATTAGCTACTTAGTACTTATTGTTCATGCCGACACCTACTTCTCTCTGCCTCTAGCTCCCTCTGTGTCTGCAACACAGACATTTGAACTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

55

Amino Acids

6.32

Weight (kDa)

4.75

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017927)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75717
malus_domestica MD15G1013100.v1.1
prunus_persica Prupe.1G366200_v2.0.a1
rosa_laevigata RLG00000011140
rosa_roxburghii Rroxscaffold_1G00056990 Rroxscaffold_7G00165350
rosa_rugosa Rorug06G0316700
rosa_samantha Rh6AG430100 Rh6CG442600 Rh6DG429300
rosa_wichuraiana Rw6G037250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 87
AgsI TTSAA 1 cut(s) 158
AluBI AGCT 2 cut(s) 78, 128
AluI AGCT 2 cut(s) 78, 128
Alw26I GTCTC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 125
BmcAI AGTACT 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 10
BseNI ACTGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 53
Bso31I GGTCTC 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 53
BsrI ACTGG 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 82
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 53
BtsCI GGATG 1 cut(s) 10
Csp6I GTAC 1 cut(s) 86
CviAII CATG 1 cut(s) 98
CviJI RGCY 3 cut(s) 67, 78, 128
CviKI_1 RGCY 3 cut(s) 67, 78, 128
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 53
FaeI CATG 1 cut(s) 101
FaiI YATR 3 cut(s) 32, 99, 166
FatI CATG 1 cut(s) 97
FokI GGATG 1 cut(s) 17
FspBI CTAG 1 cut(s) 125
Hin1II CATG 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 56
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 1 cut(s) 56
HpyCH4V TGCA 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 82
Hsp92II CATG 1 cut(s) 101
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 1 cut(s) 49
MaeI CTAG 1 cut(s) 125
MnlI CCTC 2 cut(s) 132, 142
NlaIII CATG 1 cut(s) 101
PsrI GAACNNNNNNTAC 2 cut(s) 78, 110
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
ScaI AGTACT 1 cut(s) 87
SetI ASST 4 cut(s) 49, 80, 110, 130
SgeI CNNG 4 cut(s) 52, 76, 110, 137
SspMI CTAG 1 cut(s) 125
TatI WGTACW 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 86, 153
TspGWI ACGGA 1 cut(s) 41
XspI CTAG 1 cut(s) 125
ZrmI AGTACT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.