Rroxscaffold_7G00165350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017927
Physical Location & Seq
Reverse (-)
7120414 .. 7131638
11225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00165350.1

Sequence Viewer

Length: 483 bp
ATGGATGATGACTTCTATTTTAGTGTGAATATGCCATTCGGGAAAGGTGGTGGCTGCGGCGCTTGGGGCGCATGTGCCGCCACTATGGGTGGCGCGCATAATCCAAGATCATTATCAGAGAGCTTTATCATACAAGTAAGGAGTGAAGAAGAAGCTGCCTCTCCCAAGTTGAATTTGTCTGCAATGAAAATCTTCAATCGTTTCCGAAAAATTATAATGAAACTTCTGTTTTCCATCCCCTCACCATCAGCAACTACACGGCATGGAATGAGTAGCAGTACTCCCAGGAAAAGAAACAGCACTAGCTGTGACAGATTTGAGCCCCCAAAGACTTCATGCAGTTCGTATTACTCTTCTCATTCGCATTACAACGAGGCCATCTCTGACTGCATCGAGTTCTTTAACAAGTCTAGCCAAGAGGATCATGAAGCCGGAGGGATGATTTCGGATGATCCAGATCAGTCCGGCTGCCATATGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.57

Weight (kDa)

6.28

Isoelectric Point (pI)

71.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017927)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75717
malus_domestica MD15G1013100.v1.1
prunus_persica Prupe.1G366200_v2.0.a1
rosa_laevigata RLG00000011140
rosa_roxburghii Rroxscaffold_1G00056990 Rroxscaffold_7G00165350
rosa_rugosa Rorug06G0316700
rosa_samantha Rh6AG430100 Rh6CG442600 Rh6DG429300
rosa_wichuraiana Rw6G037250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 215
AccII CGCG 1 cut(s) 95
AciI CCGC 2 cut(s) 57, 78
AclWI GGATC 2 cut(s) 429, 446
AcsI RAATTY 1 cut(s) 172
AfaI GTAC 1 cut(s) 280
AgsI TTSAA 2 cut(s) 172, 196
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 3 cut(s) 123, 155, 306
AluI AGCT 3 cut(s) 123, 155, 306
AlwI GGATC 2 cut(s) 429, 446
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 3 cut(s) 54, 155, 468
ApoI RAATTY 1 cut(s) 172
Asp700I GAANNNNTTC 1 cut(s) 191
AspLEI GCGC 4 cut(s) 62, 71, 95, 97
AsuHPI GGTGA 1 cut(s) 234
BanII GRGCYC 1 cut(s) 324
BbvI GCAGC 3 cut(s) 41, 142, 455
BccI CCATC 3 cut(s) 242, 253, 386
BceAI ACGGC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 286
BfaI CTAG 2 cut(s) 303, 411
BfoI RGCGCY 1 cut(s) 63
BisI GCNGC 5 cut(s) 55, 58, 78, 156, 469
BlsI GCNGC 5 cut(s) 56, 59, 79, 157, 470
BmcAI AGTACT 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 399
BplI GAGNNNNNCTC 2 cut(s) 365, 397
BsaBI GATNNNNATC 2 cut(s) 112, 456
BsaJI CCNNGG 1 cut(s) 284
Bse3DI GCAATG 1 cut(s) 189
Bse8I GATNNNNATC 2 cut(s) 112, 456
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 4 cut(s) 10, 234, 444, 454
BseJI GATNNNNATC 2 cut(s) 112, 456
BseMI GCAATG 1 cut(s) 189
BsePI GCGCGC 1 cut(s) 93
BseXI GCAGC 3 cut(s) 41, 142, 455
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 1 cut(s) 377
BsiSI CCGG 2 cut(s) 432, 465
BsnI GGCC 1 cut(s) 377
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 4 cut(s) 107, 421, 451, 457
BspACI CCGC 2 cut(s) 57, 78
BspANI GGCC 1 cut(s) 377
BspFNI CGCG 1 cut(s) 95
BspHI TCATGA 1 cut(s) 424
BspPI GGATC 2 cut(s) 429, 446
BsrDI GCAATG 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 284
BssHII GCGCGC 1 cut(s) 93
BssMI GATC 4 cut(s) 107, 421, 451, 457
Bst2UI CCWGG 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 358
BstC8I GCNNGC 1 cut(s) 95
BstF5I GGATG 4 cut(s) 10, 234, 444, 454
BstFNI CGCG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 4 cut(s) 62, 71, 95, 97
BstKTI GATC 4 cut(s) 110, 424, 454, 460
BstMBI GATC 4 cut(s) 107, 421, 451, 457
BstMWI GCNNNNNNNGC 3 cut(s) 66, 68, 77
BstNI CCWGG 1 cut(s) 286
BstNSI RCATGY 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 284
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 3 cut(s) 41, 142, 455
BsuRI GGCC 1 cut(s) 377
BtsCI GGATG 4 cut(s) 10, 234, 444, 454
Cac8I GCNNGC 1 cut(s) 95
CciI TCATGA 1 cut(s) 424
CfoI GCGC 4 cut(s) 62, 71, 95, 97
Csp6I GTAC 1 cut(s) 279
CviAII CATG 4 cut(s) 72, 263, 336, 425
CviJI RGCY 9 cut(s) 54, 123, 155, 306, 322, 377, 414, 431, 468
CviKI_1 RGCY 9 cut(s) 54, 123, 155, 306, 322, 377, 414, 431, 468
CviQI GTAC 1 cut(s) 279
DpnI GATC 4 cut(s) 109, 423, 453, 459
DpnII GATC 4 cut(s) 107, 421, 451, 457
Eam1104I CTCTTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 358
Eco24I GRGCYC 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 324
FaeI CATG 4 cut(s) 75, 266, 339, 428
FatI CATG 4 cut(s) 71, 262, 335, 424
FauNDI CATATG 1 cut(s) 474
Fnu4HI GCNGC 5 cut(s) 55, 58, 78, 156, 469
FokI GGATG 4 cut(s) 17, 221, 451, 461
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 5 cut(s) 55, 58, 78, 156, 469
FspBI CTAG 2 cut(s) 303, 411
GlaI GCGC 4 cut(s) 61, 70, 94, 96
GluI GCNGC 5 cut(s) 55, 58, 78, 156, 469
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 1 cut(s) 377
HapII CCGG 2 cut(s) 432, 465
HhaI GCGC 4 cut(s) 62, 71, 95, 97
Hin1II CATG 4 cut(s) 75, 266, 339, 428
Hin6I GCGC 4 cut(s) 60, 69, 93, 95
HinP1I GCGC 4 cut(s) 60, 69, 93, 95
HpaII CCGG 2 cut(s) 432, 465
HphI GGTGA 1 cut(s) 234
Hpy188I TCNGA 4 cut(s) 118, 206, 385, 448
Hpy188III TCNNGA 3 cut(s) 40, 425, 455
HpyCH4V TGCA 3 cut(s) 182, 339, 390
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 68, 77
Hsp92II CATG 4 cut(s) 75, 266, 339, 428
HspAI GCGC 4 cut(s) 60, 69, 93, 95
Kzo9I GATC 4 cut(s) 107, 421, 451, 457
LpnPI CCDG 5 cut(s) 271, 298, 445, 468, 478
Lsp1109I GCAGC 3 cut(s) 41, 142, 455
LweI GCATC 1 cut(s) 399
MaeI CTAG 2 cut(s) 303, 411
MaeIII GTNAC 1 cut(s) 308
MalI GATC 4 cut(s) 109, 423, 453, 459
MboI GATC 4 cut(s) 107, 421, 451, 457
MboII GAAGA 4 cut(s) 158, 161, 184, 345
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 2 cut(s) 172, 210
MnlI CCTC 5 cut(s) 169, 250, 367, 412, 428
MroXI GAANNNNTTC 1 cut(s) 191
MseI TTAA 1 cut(s) 402
MspI CCGG 2 cut(s) 432, 465
MspR9I CCNGG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 286
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 3 cut(s) 66, 68, 77
NdeI CATATG 1 cut(s) 474
NdeII GATC 4 cut(s) 107, 421, 451, 457
NlaIII CATG 4 cut(s) 75, 266, 339, 428
NmuCI GTSAC 1 cut(s) 308
NspI RCATGY 1 cut(s) 75
PagI TCATGA 1 cut(s) 424
PauI GCGCGC 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 191
PkrI GCNGC 5 cut(s) 56, 59, 79, 157, 470
PsiI TTATAA 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PteI GCGCGC 1 cut(s) 93
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 5 cut(s) 55, 58, 78, 156, 469
Sau3AI GATC 4 cut(s) 107, 421, 451, 457
ScaI AGTACT 1 cut(s) 280
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 1 cut(s) 324
SetI ASST 4 cut(s) 49, 125, 157, 308
SfaNI GCATC 1 cut(s) 399
Sse9I AATT 2 cut(s) 172, 210
SsiI CCGC 2 cut(s) 57, 78
SspMI CTAG 2 cut(s) 303, 411
StyD4I CCNGG 1 cut(s) 284
TaqI TCGA 1 cut(s) 393
TasI AATT 2 cut(s) 172, 210
TatI WGTACW 1 cut(s) 278
TauI GCSGC 2 cut(s) 60, 80
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 3 cut(s) 54, 155, 468
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 4 cut(s) 200, 233, 324, 441
XapI RAATTY 1 cut(s) 172
XceI RCATGY 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 2 cut(s) 303, 411
ZrmI AGTACT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.