Prupe.1G366200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017927
Physical Location & Seq
Reverse (-)
33570829 .. 33571131
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G366200.1

Sequence Viewer

Length: 303 bp
ATGAAACTCTTCAACCGCTTCCGGAAGATAATAATGAGACTCTTATTTTCTATCCCATCTCGATCAGCTACCGCGTCTTCTTCATCTTCCTCAGGAGCCACGAGCAGCACCCCCAGGCAAAGGAACAGCACCAGCTGTGACAGGTTCTTTGAGCCCCCAAAGACTTCATGCAGTTCCTATTATTCATCTCATTCGCATTATAACGAGGCCATCGCTGACTGCATCGAGTTCTTTAATAAGTCCTCCTCGTCTACCCAAGAGGACATGTTGGATTTTGATCCACAATCCAGCGTTATGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.23

Weight (kDa)

8.55

Isoelectric Point (pI)

73.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017927)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75717
malus_domestica MD15G1013100.v1.1
prunus_persica Prupe.1G366200_v2.0.a1
rosa_laevigata RLG00000011140
rosa_roxburghii Rroxscaffold_1G00056990 Rroxscaffold_7G00165350
rosa_rugosa Rorug06G0316700
rosa_samantha Rh6AG430100 Rh6CG442600 Rh6DG429300
rosa_wichuraiana Rw6G037250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 201
AccI GTMKAC 1 cut(s) 251
AccII CGCG 1 cut(s) 74
AccIII TCCGGA 1 cut(s) 21
AciI CCGC 2 cut(s) 16, 72
AclWI GGATC 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 120
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 1 cut(s) 13
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 2 cut(s) 68, 135
AluI AGCT 2 cut(s) 68, 135
Alw26I GTCTC 1 cut(s) 31
AlwI GGATC 1 cut(s) 272
Aor13HI TCCGGA 1 cut(s) 21
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 105
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
Asp700I GAANNNNTTC 1 cut(s) 8
AxyI CCTNAGG 1 cut(s) 91
BanII GRGCYC 1 cut(s) 156
BauI CACGAG 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 117
BccI CCATC 2 cut(s) 64, 218
BciT130I CCWGG 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 31
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 113
BsaWI WCCGGW 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse21I CCTNAGG 1 cut(s) 91
Bse8I GATNNNNATC 1 cut(s) 276
BseAI TCCGGA 1 cut(s) 21
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 113
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 235
BseXI GCAGC 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 31
BsnI GGCC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 156
Bsp13I TCCGGA 1 cut(s) 21
Bsp143I GATC 2 cut(s) 62, 277
BspACI CCGC 2 cut(s) 16, 72
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 104
BspEI TCCGGA 1 cut(s) 21
BspFNI CGCG 1 cut(s) 74
BspLI GGNNCC 1 cut(s) 97
BspPI GGATC 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 2 cut(s) 62, 277
BssSI CACGAG 1 cut(s) 100
Bst2BI CACGAG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 91
BstFNI CGCG 1 cut(s) 74
BstKTI GATC 2 cut(s) 65, 280
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 2 cut(s) 62, 277
BstNI CCWGG 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 113
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 117
BstV2I GAAGAC 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 295
Bsu36I CCTNAGG 1 cut(s) 91
BsuRI GGCC 1 cut(s) 209
BtgZI GCGATG 1 cut(s) 196
CseI GACGC 1 cut(s) 63
CviAII CATG 2 cut(s) 168, 265
CviJI RGCY 5 cut(s) 68, 98, 135, 154, 209
CviKI_1 RGCY 5 cut(s) 68, 98, 135, 154, 209
DdeI CTNAG 1 cut(s) 91
DpnI GATC 2 cut(s) 64, 279
DpnII GATC 2 cut(s) 62, 277
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco24I GRGCYC 1 cut(s) 156
Eco81I CCTNAGG 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 156
FaeI CATG 2 cut(s) 171, 268
FaiI YATR 4 cut(s) 169, 201, 266, 296
FatI CATG 2 cut(s) 167, 264
FblI GTMKAC 1 cut(s) 251
Fnu4HI GCNGC 1 cut(s) 106
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 106
HaeIII GGCC 1 cut(s) 209
HapII CCGG 1 cut(s) 22
HgaI GACGC 1 cut(s) 63
Hin1II CATG 2 cut(s) 171, 268
HinfI GANTC 1 cut(s) 39
HpaII CCGG 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 252
Hpy188III TCNNGA 3 cut(s) 22, 60, 93
Hpy8I GTNNAC 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 171, 222
HpyF3I CTNAG 1 cut(s) 91
Hsp92II CATG 2 cut(s) 171, 268
Kpn2I TCCGGA 1 cut(s) 21
Kzo9I GATC 2 cut(s) 62, 277
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 6 cut(s) 35, 78, 100, 127, 127, 145
Lsp1109I GCAGC 1 cut(s) 117
LweI GCATC 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 137
MalI GATC 2 cut(s) 64, 279
MboI GATC 2 cut(s) 62, 277
MboII GAAGA 4 cut(s) 37, 69, 72, 78
MhlI GDGCHC 1 cut(s) 156
MlyI GAGTC 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 5 cut(s) 100, 199, 253, 253, 256
MroI TCCGGA 1 cut(s) 21
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 135
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 115
MvaI CCWGG 1 cut(s) 115
MvnI CGCG 1 cut(s) 74
NdeII GATC 2 cut(s) 62, 277
NlaIII CATG 2 cut(s) 171, 268
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 137
NspI RCATGY 1 cut(s) 268
PciI ACATGT 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 107
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PscI ACATGT 1 cut(s) 264
PsiI TTATAA 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 135
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 2 cut(s) 62, 277
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 115
SduI GDGCHC 1 cut(s) 156
SetI ASST 3 cut(s) 70, 137, 146
SfaNI GCATC 1 cut(s) 231
SsiI CCGC 2 cut(s) 16, 72
StyD4I CCNGG 1 cut(s) 113
TaqI TCGA 2 cut(s) 61, 225
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 1 cut(s) 105
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 4 cut(s) 17, 72, 156, 174
XceI RCATGY 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.