Rh6CG442600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
62169264 .. 62169762
499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG442600.1

Sequence Viewer

Length: 402 bp
ATGCACAATATTAGGCATAATCCAAGAACATTATCAGAGAGCTTTATCATACAAGTAAGGAGTGAAGAAGAAGCTGCCTCTCCCAAGTTGAATTTGTCTGCAATGAAAATCTTCAATCGTTTCCGAAAAATTATAATGAAACTTCTGTTTTCCATCCCCTCACCATCAGCAACTACACAGCATGGAATGAGTAGCAGTACTCCCAGGAAAAGAAACAGCACTAGCTGTGACAGATTTGAGCCCCCAAAGACTTCATGCAGTTCGTATTACTCTTCTCATTCGCATTACAACGAGGCCATCTCTGACTGCATCGAGTTCTTTAACAAGTCTAGCCAAGAGGATCATGAAGCCGGAGGGATGATTTCGGATGATCCAGATCAGTCCGGCTGCCATATGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.03

Weight (kDa)

7.05

Isoelectric Point (pI)

80.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017927)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75717
malus_domestica MD15G1013100.v1.1
prunus_persica Prupe.1G366200_v2.0.a1
rosa_laevigata RLG00000011140
rosa_roxburghii Rroxscaffold_1G00056990 Rroxscaffold_7G00165350
rosa_rugosa Rorug06G0316700
rosa_samantha Rh6AG430100 Rh6CG442600 Rh6DG429300
rosa_wichuraiana Rw6G037250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 134
AclWI GGATC 2 cut(s) 348, 365
AcsI RAATTY 1 cut(s) 91
AfaI GTAC 1 cut(s) 199
AgsI TTSAA 2 cut(s) 91, 115
AjnI CCWGG 1 cut(s) 203
AluBI AGCT 3 cut(s) 42, 74, 225
AluI AGCT 3 cut(s) 42, 74, 225
AlwI GGATC 2 cut(s) 348, 365
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 2 cut(s) 74, 387
ApoI RAATTY 1 cut(s) 91
Asp700I GAANNNNTTC 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 153
BanII GRGCYC 1 cut(s) 243
BbvI GCAGC 2 cut(s) 61, 374
BccI CCATC 3 cut(s) 161, 172, 305
BciT130I CCWGG 1 cut(s) 205
BfaI CTAG 2 cut(s) 222, 330
BisI GCNGC 2 cut(s) 75, 388
BlsI GCNGC 2 cut(s) 76, 389
BmcAI AGTACT 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 205
BmsI GCATC 1 cut(s) 318
BplI GAGNNNNNCTC 2 cut(s) 284, 316
BsaBI GATNNNNATC 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 108
Bse8I GATNNNNATC 1 cut(s) 375
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 203
BseGI GGATG 3 cut(s) 153, 363, 373
BseJI GATNNNNATC 1 cut(s) 375
BseMI GCAATG 1 cut(s) 108
BseXI GCAGC 2 cut(s) 61, 374
BshFI GGCC 1 cut(s) 296
BsiSI CCGG 2 cut(s) 351, 384
BsnI GGCC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 3 cut(s) 340, 370, 376
BspANI GGCC 1 cut(s) 296
BspHI TCATGA 1 cut(s) 343
BspPI GGATC 2 cut(s) 348, 365
BsrDI GCAATG 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 3 cut(s) 340, 370, 376
Bst2UI CCWGG 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 277
BstF5I GGATG 3 cut(s) 153, 363, 373
BstKTI GATC 3 cut(s) 343, 373, 379
BstMBI GATC 3 cut(s) 340, 370, 376
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 61, 374
BsuRI GGCC 1 cut(s) 296
BtsCI GGATG 3 cut(s) 153, 363, 373
CciI TCATGA 1 cut(s) 343
Csp6I GTAC 1 cut(s) 198
CviAII CATG 3 cut(s) 182, 255, 344
CviJI RGCY 8 cut(s) 42, 74, 225, 241, 296, 333, 350, 387
CviKI_1 RGCY 8 cut(s) 42, 74, 225, 241, 296, 333, 350, 387
CviQI GTAC 1 cut(s) 198
DpnI GATC 3 cut(s) 342, 372, 378
DpnII GATC 3 cut(s) 340, 370, 376
Eam1104I CTCTTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 243
FaeI CATG 3 cut(s) 185, 258, 347
FaiI YATR 8 cut(s) 18, 50, 134, 183, 256, 345, 393, 395
FatI CATG 3 cut(s) 181, 254, 343
FauNDI CATATG 1 cut(s) 393
Fnu4HI GCNGC 2 cut(s) 75, 388
FokI GGATG 3 cut(s) 140, 370, 380
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 2 cut(s) 75, 388
FspBI CTAG 2 cut(s) 222, 330
GluI GCNGC 2 cut(s) 75, 388
HaeIII GGCC 1 cut(s) 296
HapII CCGG 2 cut(s) 351, 384
Hin1II CATG 3 cut(s) 185, 258, 347
HpaII CCGG 2 cut(s) 351, 384
HphI GGTGA 1 cut(s) 153
Hpy188I TCNGA 4 cut(s) 37, 125, 304, 367
Hpy188III TCNNGA 2 cut(s) 344, 374
HpyCH4V TGCA 4 cut(s) 4, 101, 258, 309
Hsp92II CATG 3 cut(s) 185, 258, 347
Kzo9I GATC 3 cut(s) 340, 370, 376
LpnPI CCDG 5 cut(s) 190, 217, 364, 387, 397
Lsp1109I GCAGC 2 cut(s) 61, 374
LweI GCATC 1 cut(s) 318
MaeI CTAG 2 cut(s) 222, 330
MaeIII GTNAC 1 cut(s) 227
MalI GATC 3 cut(s) 342, 372, 378
MboI GATC 3 cut(s) 340, 370, 376
MboII GAAGA 4 cut(s) 77, 80, 103, 264
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 2 cut(s) 91, 129
MnlI CCTC 5 cut(s) 88, 169, 286, 331, 347
MroXI GAANNNNTTC 1 cut(s) 110
MseI TTAA 1 cut(s) 321
MspI CCGG 2 cut(s) 351, 384
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
NdeI CATATG 1 cut(s) 393
NdeII GATC 3 cut(s) 340, 370, 376
NlaIII CATG 3 cut(s) 185, 258, 347
NmuCI GTSAC 1 cut(s) 227
PagI TCATGA 1 cut(s) 343
PdmI GAANNNNTTC 1 cut(s) 110
PkrI GCNGC 2 cut(s) 76, 389
PsiI TTATAA 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 2 cut(s) 75, 388
Sau3AI GATC 3 cut(s) 340, 370, 376
ScaI AGTACT 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 1 cut(s) 243
SetI ASST 3 cut(s) 44, 76, 227
SfaNI GCATC 1 cut(s) 318
Sse9I AATT 2 cut(s) 91, 129
SspI AATATT 1 cut(s) 10
SspMI CTAG 2 cut(s) 222, 330
StyD4I CCNGG 1 cut(s) 203
TaqI TCGA 1 cut(s) 312
TasI AATT 2 cut(s) 91, 129
TatI WGTACW 1 cut(s) 197
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 2 cut(s) 74, 387
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 4 cut(s) 119, 152, 243, 360
XapI RAATTY 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 2 cut(s) 222, 330
ZrmI AGTACT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.