AT1G76060

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017104
Physical Location & Seq
Reverse (-)
28543100 .. 28543850
751 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76060.1

Sequence Viewer

Length: 474 bp
ATGATGGCTGCGAAGCTTCAGAAATGGCGAAATCTGGCAGGTCGTCTAGATCTGATGAATCGGAGCGGCGCTGTGTCGACGAGGCGGTTCCTGCACGAAGGTCCAGATACCGTGGAGGAGCTTCTCGAAAGACATCTAGCGAAGAAAGAGAAACCAATAATCGATCACGATGAGGCTGAGTTTCTGAATAGACGGCGTCTGACGAGCACGCGCCGGGAAGCGTTGAGTTTGTACAGAGACATATTACGAGCGACTCGGTTCTTCACGTGGATTGATTCCAGGGGAAATTTATGGAGGGACGTGTTGAGAGAGAACGCGAGGAAGGAGTTTGAAGCGGCGCGATTTGAGACGGATCCGGAGGTTATCACAAGGCTTCTGATAGGTGGAAGCGACGCCGTTTCGTCTGCTTTAGATAAGCTTGCGGAGAAGCAAAGAGAGATGATTGAGAAACAACGCCGTGGTGATCAACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

157

Amino Acids

18.5

Weight (kDa)

9.96

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 72 - 130 4.6e-11 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017104)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76060
fragaria_vesca FvH4_2g37980
malus_domestica MD08G1008000.v1.1
prunus_persica Prupe.1G359800_v2.0.a1
pyrus_communis pycom08g00650
rosa_chinensis RchiOBHm_Chr6g0303641
rosa_laevigata RLG00000011065
rosa_roxburghii Rroxscaffold_7G00164550
rosa_rugosa Rorug02G0244700 Rorug06G0323200
rosa_samantha Rh6AG437500 Rh6CG449500
rosa_wichuraiana Rw6G037880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 29
AccBSI CCGCTC 1 cut(s) 66
AccI GTMKAC 1 cut(s) 77
AccII CGCG 3 cut(s) 211, 317, 340
AccIII TCCGGA 1 cut(s) 355
AciI CCGC 4 cut(s) 66, 85, 335, 422
AclWI GGATC 2 cut(s) 347, 360
AcsI RAATTY 1 cut(s) 286
AcvI CACGTG 1 cut(s) 267
AcyI GRCGYC 2 cut(s) 196, 393
AfaI GTAC 1 cut(s) 233
AflIII ACRYGT 1 cut(s) 300
AgsI TTSAA 1 cut(s) 332
AjiI CACGTC 1 cut(s) 301
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 3 cut(s) 16, 121, 418
AluI AGCT 3 cut(s) 16, 121, 418
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 2 cut(s) 231, 341
AlwI GGATC 2 cut(s) 347, 360
Aor13HI TCCGGA 1 cut(s) 355
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 1 cut(s) 286
AspLEI GCGC 3 cut(s) 71, 213, 340
AspS9I GGNCC 1 cut(s) 101
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 473
AvaII GGWCC 1 cut(s) 101
BamHI GGATCC 1 cut(s) 352
BbrPI CACGTG 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 209
BceAI ACGGC 3 cut(s) 209, 380, 441
BciT130I CCWGG 1 cut(s) 280
BclI TGATCA 1 cut(s) 463
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 2 cut(s) 231, 341
BfaI CTAG 2 cut(s) 47, 137
BfoI RGCGCY 1 cut(s) 72
BfuAI ACCTGC 1 cut(s) 29
BglII AGATCT 1 cut(s) 49
BisI GCNGC 3 cut(s) 9, 67, 336
BlsI GCNGC 3 cut(s) 10, 68, 337
Bme1390I CCNGG 2 cut(s) 215, 280
Bme18I GGWCC 1 cut(s) 101
BmgBI CACGTC 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 2 cut(s) 89, 354
BmrFI CCNGG 2 cut(s) 215, 280
BpuMI CCSGG 1 cut(s) 215
Bsa29I ATCGAT 1 cut(s) 162
BsaAI YACGTR 1 cut(s) 267
BsaHI GRCGYC 2 cut(s) 196, 393
BsaJI CCNNGG 3 cut(s) 111, 279, 457
BsaWI WCCGGW 1 cut(s) 355
BseAI TCCGGA 1 cut(s) 355
BseBI CCWGG 1 cut(s) 280
BseCI ATCGAT 1 cut(s) 162
BseDI CCNNGG 3 cut(s) 111, 279, 457
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 131
BsgI GTGCAG 1 cut(s) 77
Bsh1236I CGCG 3 cut(s) 211, 317, 340
BshVI ATCGAT 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 2 cut(s) 214, 356
BslFI GGGAC 1 cut(s) 311
BsmAI GTCTC 2 cut(s) 231, 341
BsmBI CGTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 209
Bsp13I TCCGGA 1 cut(s) 355
Bsp1407I TGTACA 1 cut(s) 231
Bsp143I GATC 4 cut(s) 49, 163, 352, 463
BspACI CCGC 4 cut(s) 66, 85, 335, 422
BspCNI CTCAG 1 cut(s) 169
BspDI ATCGAT 1 cut(s) 162
BspEI TCCGGA 1 cut(s) 355
BspFNI CGCG 3 cut(s) 211, 317, 340
BspLI GGNNCC 2 cut(s) 89, 354
BspMI ACCTGC 1 cut(s) 29
BspPI GGATC 2 cut(s) 347, 360
BsrBI CCGCTC 1 cut(s) 66
BsrGI TGTACA 1 cut(s) 231
BssECI CCNNGG 3 cut(s) 111, 279, 457
BssMI GATC 4 cut(s) 49, 163, 352, 463
BssNI GRCGYC 2 cut(s) 196, 393
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 1 cut(s) 112
BstACI GRCGYC 2 cut(s) 196, 393
BstAUI TGTACA 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 209, 420
BstDEI CTNAG 1 cut(s) 177
BstDSI CCRYGG 2 cut(s) 111, 457
BstFNI CGCG 3 cut(s) 211, 317, 340
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 3 cut(s) 71, 213, 340
BstKTI GATC 4 cut(s) 52, 166, 355, 466
BstMAI GTCTC 2 cut(s) 231, 341
BstMBI GATC 4 cut(s) 49, 163, 352, 463
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 213, 278
BstUI CGCG 3 cut(s) 211, 317, 340
BstX2I RGATCY 2 cut(s) 49, 352
BstYI RGATCY 2 cut(s) 49, 352
Bsu15I ATCGAT 1 cut(s) 162
BsuTUI ATCGAT 1 cut(s) 162
BtgI CCRYGG 2 cut(s) 111, 457
BtrI CACGTC 1 cut(s) 301
BveI ACCTGC 1 cut(s) 29
Cac8I GCNNGC 2 cut(s) 209, 420
CfoI GCGC 3 cut(s) 71, 213, 340
Cfr13I GGNCC 1 cut(s) 101
ClaI ATCGAT 1 cut(s) 162
CseI GACGC 2 cut(s) 185, 401
Csp6I GTAC 1 cut(s) 232
CviJI RGCY 6 cut(s) 8, 16, 121, 176, 373, 418
CviKI_1 RGCY 6 cut(s) 8, 16, 121, 176, 373, 418
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 1 cut(s) 177
DpnI GATC 4 cut(s) 51, 165, 354, 465
DpnII GATC 4 cut(s) 49, 163, 352, 463
Eco47I GGWCC 1 cut(s) 101
Eco72I CACGTG 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 278
Esp3I CGTCTC 1 cut(s) 341
FaiI YATR 2 cut(s) 242, 292
FaqI GGGAC 1 cut(s) 311
FbaI TGATCA 1 cut(s) 463
FblI GTMKAC 1 cut(s) 77
Fnu4HI GCNGC 3 cut(s) 9, 67, 336
Fsp4HI GCNGC 3 cut(s) 9, 67, 336
FspBI CTAG 2 cut(s) 47, 137
GlaI GCGC 3 cut(s) 70, 212, 339
GluI GCNGC 3 cut(s) 9, 67, 336
HaeII RGCGCY 1 cut(s) 72
HapII CCGG 2 cut(s) 214, 356
HgaI GACGC 2 cut(s) 185, 401
HhaI GCGC 3 cut(s) 71, 213, 340
Hin1I GRCGYC 2 cut(s) 196, 393
Hin6I GCGC 3 cut(s) 69, 211, 338
HinP1I GCGC 3 cut(s) 69, 211, 338
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HindIII AAGCTT 2 cut(s) 14, 416
HinfI GANTC 3 cut(s) 58, 253, 275
HpaII CCGG 2 cut(s) 214, 356
HphI GGTGA 1 cut(s) 473
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 6 cut(s) 21, 54, 63, 186, 201, 378
Hpy188III TCNNGA 5 cut(s) 47, 104, 125, 167, 356
Hpy8I GTNNAC 1 cut(s) 78
Hpy99I CGWCG 2 cut(s) 82, 395
HpyAV CCTTC 2 cut(s) 92, 316
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 2 cut(s) 266, 300
HpyCH4V TGCA 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpyF3I CTNAG 1 cut(s) 177
HpySE526I ACGT 2 cut(s) 266, 300
Hsp92I GRCGYC 2 cut(s) 196, 393
HspAI GCGC 3 cut(s) 69, 211, 338
Kpn2I TCCGGA 1 cut(s) 355
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 4 cut(s) 49, 163, 352, 463
LmnI GCTCC 2 cut(s) 63, 118
LpnPI CCDG 8 cut(s) 20, 24, 104, 117, 227, 265, 292, 369
MaeI CTAG 2 cut(s) 47, 137
MaeII ACGT 2 cut(s) 266, 300
MalI GATC 4 cut(s) 51, 165, 354, 465
MbiI CCGCTC 1 cut(s) 66
MboI GATC 4 cut(s) 49, 163, 352, 463
MboII GAAGA 2 cut(s) 154, 253
MflI RGATCY 2 cut(s) 49, 352
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 1 cut(s) 286
MlyI GAGTC 1 cut(s) 247
MnlI CCTC 6 cut(s) 75, 109, 166, 288, 312, 352
MroI TCCGGA 1 cut(s) 355
MspI CCGG 2 cut(s) 214, 356
MspR9I CCNGG 2 cut(s) 215, 280
MvaI CCWGG 1 cut(s) 280
MvnI CGCG 3 cut(s) 211, 317, 340
MwoI GCNNNNNNNGC 1 cut(s) 91
NciI CCSGG 1 cut(s) 215
NdeII GATC 4 cut(s) 49, 163, 352, 463
NlaIV GGNNCC 2 cut(s) 89, 354
PfeI GAWTC 2 cut(s) 58, 275
PflFI GACNNNGTC 1 cut(s) 195
PkrI GCNGC 3 cut(s) 10, 68, 337
PleI GAGTC 1 cut(s) 247
PmaCI CACGTG 1 cut(s) 267
PmlI CACGTG 1 cut(s) 267
PpsI GAGTC 1 cut(s) 247
Ppu21I YACGTR 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 278
PspCI CACGTG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 2 cut(s) 89, 354
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 2 cut(s) 49, 352
PsyI GACNNNGTC 1 cut(s) 195
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SalI GTCGAC 1 cut(s) 76
SatI GCNGC 3 cut(s) 9, 67, 336
Sau3AI GATC 4 cut(s) 49, 163, 352, 463
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 2 cut(s) 215, 280
SduI GDGCHC 1 cut(s) 209
SetI ASST 9 cut(s) 18, 43, 103, 123, 269, 303, 363, 385, 420
SinI GGWCC 1 cut(s) 101
Sse9I AATT 1 cut(s) 286
SsiI CCGC 4 cut(s) 66, 85, 335, 422
SspMI CTAG 2 cut(s) 47, 137
StyD4I CCNGG 2 cut(s) 213, 278
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 2 cut(s) 269, 303
TaqI TCGA 3 cut(s) 77, 126, 162
TasI AATT 1 cut(s) 286
TatI WGTACW 1 cut(s) 231
TauI GCSGC 2 cut(s) 69, 338
TfiI GAWTC 2 cut(s) 58, 275
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 71
TspGWI ACGGA 1 cut(s) 365
Tth111I GACNNNGTC 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 1 cut(s) 286
XbaI TCTAGA 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 77
XspI CTAG 2 cut(s) 47, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.