pycom08g00650

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0017104
Physical Location & Seq
Forward (+)
521714 .. 522256
543 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g00650.1

Sequence Viewer

Length: 543 bp
ATGACGCTTTCGGCCCACCTTATATTTATTCTATTTGCTCCAATCTTCTGCAACCCCCCCCAACTGAGCAGAGAGATGACCGCGAATCTACAAAAATGTCGAATCGCTCTGAAGCTCATCATCGGGCGCAACGACGCCGTTTTCAATTGTAGCTGGCGTCTATTGCACGAGGGCCCGGACACCGTGGAGGAGCTTCTGGACAGACACATAGTGAAGAAAGAGAAACACCTCGACGAGGAGGAGGAGGAGTTGCTGAATCGGCGGCGACTCACCAGCACTCGGCGGGAGGCGCTGAGTCTGTACCGAGATATAATTAGGGCGACTCGGTTCTTCATGTGGCCGGACTCTCGAGGCGTTCTCTGGCGAGACGTGCTGAGGGAGAACGCTAGGAAGGAGTTCGAGGAGGCCCGATTCGAGACGGATCCGGAAGTTATAACCCGACTTCTCATCGGCGGTCATGATGCGGTGCAGTCGGCAATAGATAAGCTCGCCGAGAAGCAGCGGCAGCAGATTCAGAAGGAGCGAGGAGGCGGTCAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

181

Amino Acids

21.13

Weight (kDa)

6.98

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 95 - 156 1.9e-10 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017104)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76060
fragaria_vesca FvH4_2g37980
malus_domestica MD08G1008000.v1.1
prunus_persica Prupe.1G359800_v2.0.a1
pyrus_communis pycom08g00650
rosa_chinensis RchiOBHm_Chr6g0303641
rosa_laevigata RLG00000011065
rosa_roxburghii Rroxscaffold_7G00164550
rosa_rugosa Rorug02G0244700 Rorug06G0323200
rosa_samantha Rh6AG437500 Rh6CG449500
rosa_wichuraiana Rw6G037880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 434
AccII CGCG 1 cut(s) 83
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 7 cut(s) 81, 262, 283, 453, 464, 502, 531
AclWI GGATC 2 cut(s) 416, 429
AcoI YGGCCR 1 cut(s) 338
AcuI CTGAAG 1 cut(s) 131
AcyI GRCGYC 2 cut(s) 135, 157
AdeI CACNNNGTG 1 cut(s) 211
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 2 cut(s) 235, 279
AgsI TTSAA 1 cut(s) 145
AjiI CACGTC 1 cut(s) 370
AluBI AGCT 4 cut(s) 115, 153, 193, 487
AluI AGCT 4 cut(s) 115, 153, 193, 487
Alw26I GTCTC 2 cut(s) 360, 410
AlwI GGATC 2 cut(s) 416, 429
Ama87I CYCGRG 1 cut(s) 348
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 4 cut(s) 12, 172, 338, 405
ApaI GGGCCC 1 cut(s) 176
ApeKI GCWGC 2 cut(s) 499, 505
Asp700I GAANNNNTTC 1 cut(s) 395
AspLEI GCGC 2 cut(s) 129, 292
AspS9I GGNCC 4 cut(s) 13, 172, 173, 406
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 262
AvaI CYCGRG 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 176
BamHI GGATCC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 176
BauI CACGAG 1 cut(s) 167
BbvCI CCTCAGC 1 cut(s) 374
BbvI GCAGC 2 cut(s) 511, 517
BceAI ACGGC 1 cut(s) 122
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 360, 410
BfaI CTAG 1 cut(s) 387
BfoI RGCGCY 1 cut(s) 293
BisI GCNGC 4 cut(s) 263, 500, 503, 506
BlsI GCNGC 4 cut(s) 264, 501, 504, 507
Bme1390I CCNGG 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 348
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 4 cut(s) 13, 172, 173, 406
BmiI GGNNCC 2 cut(s) 174, 423
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 1 cut(s) 451
BplI GAGNNNNNCTC 2 cut(s) 342, 374
Bpu10I CCTNAGC 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 176
BsaHI GRCGYC 2 cut(s) 135, 157
BsaJI CCNNGG 1 cut(s) 183
BsaWI WCCGGW 1 cut(s) 424
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 279
BseAI TCCGGA 1 cut(s) 424
BseDI CCNNGG 1 cut(s) 183
BseLI CCNNNNNNNGG 2 cut(s) 235, 279
BseMII CTCAG 3 cut(s) 56, 284, 365
BseRI GAGGAG 7 cut(s) 203, 251, 254, 257, 260, 416, 540
BseSI GKGCMC 1 cut(s) 176
BseXI GCAGC 2 cut(s) 511, 517
BsgI GTGCAG 1 cut(s) 488
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 4 cut(s) 14, 174, 340, 407
BsiHKCI CYCGRG 1 cut(s) 348
BsiSI CCGG 3 cut(s) 176, 341, 425
BslI CCNNNNNNNGG 2 cut(s) 235, 279
BsmAI GTCTC 2 cut(s) 360, 410
BsmBI CGTCTC 2 cut(s) 360, 410
BsnI GGCC 4 cut(s) 14, 174, 340, 407
BsoBI CYCGRG 1 cut(s) 348
Bsp120I GGGCCC 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 176
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 1 cut(s) 421
BspACI CCGC 7 cut(s) 81, 262, 283, 453, 464, 502, 531
BspANI GGCC 4 cut(s) 14, 174, 340, 407
BspCNI CTCAG 3 cut(s) 57, 285, 366
BspEI TCCGGA 1 cut(s) 424
BspFNI CGCG 1 cut(s) 83
BspHI TCATGA 1 cut(s) 457
BspLI GGNNCC 2 cut(s) 174, 423
BspPI GGATC 2 cut(s) 416, 429
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 1 cut(s) 421
BssNI GRCGYC 2 cut(s) 135, 157
BssSI CACGAG 1 cut(s) 167
Bst2BI CACGAG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 184
BstACI GRCGYC 2 cut(s) 135, 157
BstC8I GCNNGC 2 cut(s) 155, 489
BstDEI CTNAG 3 cut(s) 65, 293, 374
BstDSI CCRYGG 1 cut(s) 183
BstENI CCTNNNNNAGG 1 cut(s) 233
BstFNI CGCG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 2 cut(s) 129, 292
BstKTI GATC 1 cut(s) 424
BstMAI GTCTC 2 cut(s) 360, 410
BstMBI GATC 1 cut(s) 421
BstMWI GCNNNNNNNGC 5 cut(s) 163, 259, 289, 370, 505
BstSCI CCNGG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 176
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 511, 517
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuRI GGCC 4 cut(s) 14, 174, 340, 407
BtgI CCRYGG 1 cut(s) 183
BtrI CACGTC 1 cut(s) 370
Cac8I GCNNGC 2 cut(s) 155, 489
CciI TCATGA 1 cut(s) 457
CfoI GCGC 2 cut(s) 129, 292
Cfr13I GGNCC 4 cut(s) 13, 172, 173, 406
CseI GACGC 3 cut(s) 13, 143, 146
Csp6I GTAC 1 cut(s) 301
CviAII CATG 2 cut(s) 334, 458
CviJI RGCY 8 cut(s) 14, 115, 153, 174, 193, 340, 407, 487
CviKI_1 RGCY 8 cut(s) 14, 115, 153, 174, 193, 340, 407, 487
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 3 cut(s) 65, 293, 374
DpnI GATC 1 cut(s) 423
DpnII GATC 1 cut(s) 421
DraIII CACNNNGTG 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 338
Eco24I GRGCYC 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 348
EcoNI CCTNNNNNAGG 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 176
Esp3I CGTCTC 2 cut(s) 360, 410
FaeI CATG 2 cut(s) 337, 461
FaiI YATR 6 cut(s) 23, 209, 311, 335, 434, 459
FatI CATG 2 cut(s) 333, 457
FauI CCCGC 1 cut(s) 276
Fnu4HI GCNGC 4 cut(s) 263, 500, 503, 506
FriOI GRGCYC 1 cut(s) 176
Fsp4HI GCNGC 4 cut(s) 263, 500, 503, 506
FspBI CTAG 1 cut(s) 387
GlaI GCGC 2 cut(s) 128, 291
GluI GCNGC 4 cut(s) 263, 500, 503, 506
HaeII RGCGCY 1 cut(s) 293
HaeIII GGCC 4 cut(s) 14, 174, 340, 407
HapII CCGG 3 cut(s) 176, 341, 425
HgaI GACGC 3 cut(s) 13, 143, 146
HhaI GCGC 2 cut(s) 129, 292
Hin1I GRCGYC 2 cut(s) 135, 157
Hin1II CATG 2 cut(s) 337, 461
Hin6I GCGC 2 cut(s) 127, 290
HinP1I GCGC 2 cut(s) 127, 290
HinfI GANTC 9 cut(s) 85, 102, 256, 267, 295, 322, 344, 411, 511
HpaII CCGG 3 cut(s) 176, 341, 425
HphI GGTGA 1 cut(s) 262
Hpy188I TCNGA 2 cut(s) 111, 516
Hpy188III TCNNGA 6 cut(s) 197, 348, 415, 425, 458, 536
Hpy99I CGWCG 2 cut(s) 137, 236
HpyAV CCTTC 2 cut(s) 385, 511
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 3 cut(s) 51, 166, 469
HpyF10VI GCNNNNNNNGC 5 cut(s) 163, 259, 289, 370, 505
HpyF3I CTNAG 3 cut(s) 65, 293, 374
HpySE526I ACGT 1 cut(s) 369
Hsp92I GRCGYC 2 cut(s) 135, 157
Hsp92II CATG 2 cut(s) 337, 461
HspAI GCGC 2 cut(s) 127, 290
Kpn2I TCCGGA 1 cut(s) 424
Kzo9I GATC 1 cut(s) 421
LmnI GCTCC 3 cut(s) 43, 190, 520
LpnPI CCDG 7 cut(s) 139, 182, 189, 286, 346, 354, 438
Lsp1109I GCAGC 2 cut(s) 511, 517
LweI GCATC 1 cut(s) 451
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 369
MalI GATC 1 cut(s) 423
MboI GATC 1 cut(s) 421
MboII GAAGA 3 cut(s) 37, 226, 322
MfeI CAATTG 1 cut(s) 145
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 1 cut(s) 176
MluCI AATT 2 cut(s) 145, 312
MlyI GAGTC 4 cut(s) 261, 304, 316, 338
MroI TCCGGA 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 395
MseI TTAA 1 cut(s) 541
MspA1I CMGCKG 1 cut(s) 502
MspI CCGG 3 cut(s) 176, 341, 425
MspR9I CCNGG 1 cut(s) 176
MunI CAATTG 1 cut(s) 145
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 5 cut(s) 163, 259, 289, 370, 505
NciI CCSGG 1 cut(s) 176
NdeII GATC 1 cut(s) 421
NlaIII CATG 2 cut(s) 337, 461
NlaIV GGNNCC 2 cut(s) 174, 423
NmeAIII GCCGAG 2 cut(s) 259, 517
PaeR7I CTCGAG 1 cut(s) 348
PagI TCATGA 1 cut(s) 457
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 5 cut(s) 85, 102, 256, 411, 511
PkrI GCNGC 4 cut(s) 264, 501, 504, 507
PleI GAGTC 4 cut(s) 261, 303, 316, 338
PpsI GAGTC 4 cut(s) 261, 303, 316, 338
PsiI TTATAA 1 cut(s) 434
PspN4I GGNNCC 2 cut(s) 174, 423
PspOMI GGGCCC 1 cut(s) 172
PspPI GGNCC 4 cut(s) 13, 172, 173, 406
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SaqAI TTAA 1 cut(s) 541
SatI GCNGC 4 cut(s) 263, 500, 503, 506
Sau3AI GATC 1 cut(s) 421
Sau96I GGNCC 4 cut(s) 13, 172, 173, 406
SchI GAGTC 4 cut(s) 261, 304, 316, 338
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 176
SetI ASST 7 cut(s) 21, 117, 155, 195, 231, 372, 489
SfaNI GCATC 1 cut(s) 451
Sfr274I CTCGAG 1 cut(s) 348
SlaI CTCGAG 1 cut(s) 348
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
Sse9I AATT 2 cut(s) 145, 312
SsiI CCGC 7 cut(s) 81, 262, 283, 453, 464, 502, 531
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 1 cut(s) 372
TaqI TCGA 5 cut(s) 100, 231, 349, 399, 414
TasI AATT 2 cut(s) 145, 312
TauI GCSGC 2 cut(s) 265, 505
TfiI GAWTC 5 cut(s) 85, 102, 256, 411, 511
Tru1I TTAA 1 cut(s) 541
Tru9I TTAA 1 cut(s) 541
TseI GCWGC 2 cut(s) 499, 505
TspDTI ATGAA 1 cut(s) 322
TspGWI ACGGA 1 cut(s) 434
XagI CCTNNNNNAGG 1 cut(s) 233
XhoI CTCGAG 1 cut(s) 348
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.