FvH4_2g37980

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017104
Physical Location & Seq
Forward (+)
27542162 .. 27544011
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37980.t1

Sequence Viewer

Length: 465 bp
ATGACGACGAGTCTCCAGAAATGGAGAGTCCCTCTGAGCCTTCTCCGTCGCGACGACGTCGTTTCGCGGCGGCTATTACACGAAGGCCCGGACACGGTGGAGGAGCTTGTAGAAAGACACGTGGTGAAGAAAGAGAAACACCTGGATGACGAAGAGGAGGAGCTGCTGAATCGGCGGCGACTGACCACCACGCGCCGGGAGGCGCTGTGTCTTTACCGAGACATACTCCGGGCGACGAGGTTCTTCATGTGGACGGACTCTCGAGGCGTGCTTTGGCGAGACGTGTTGAGAGAGAACGCGAGGAAGGAGTTCGAGGAGGCCCGGTTCGAAACGGATCCGGAAGTTGTGACCCGATTGCTGATCGGAGGTCATGACGCGGTGCAGGCGGCGTTGGATAAGCTCGCTGAGAAGCAGCGGCAGCAGATTCAGAAGGAGCGAGGCGGCGGCGGCGGAGATCAACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

155

Amino Acids

18.16

Weight (kDa)

6.93

Isoelectric Point (pI)

59.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 66 - 126 8.6e-10 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017104)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76060
fragaria_vesca FvH4_2g37980
malus_domestica MD08G1008000.v1.1
prunus_persica Prupe.1G359800_v2.0.a1
pyrus_communis pycom08g00650
rosa_chinensis RchiOBHm_Chr6g0303641
rosa_laevigata RLG00000011065
rosa_roxburghii Rroxscaffold_7G00164550
rosa_rugosa Rorug02G0244700 Rorug06G0323200
rosa_samantha Rh6AG437500 Rh6CG449500
rosa_wichuraiana Rw6G037880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AccII CGCG 5 cut(s) 51, 67, 193, 299, 377
AccIII TCCGGA 1 cut(s) 337
AclWI GGATC 2 cut(s) 329, 342
AcvI CACGTG 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 57
AdeI CACNNNGTG 1 cut(s) 124
AfiI CCNNNNNNNGG 2 cut(s) 94, 195
AflIII ACRYGT 2 cut(s) 118, 282
AhdI GACNNNNNGTC 1 cut(s) 9
AjiI CACGTC 1 cut(s) 283
AjnI CCWGG 1 cut(s) 141
AloI GAACNNNNNNTCC 2 cut(s) 308, 340
AluBI AGCT 3 cut(s) 106, 163, 400
AluI AGCT 3 cut(s) 106, 163, 400
Alw26I GTCTC 3 cut(s) 17, 213, 273
AlwI GGATC 2 cut(s) 329, 342
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 337
AoxI GGCC 2 cut(s) 85, 318
ApeKI GCWGC 3 cut(s) 163, 412, 418
Asp700I GAANNNNTTC 1 cut(s) 308
AspLEI GCGC 2 cut(s) 195, 205
AspS9I GGNCC 2 cut(s) 86, 319
AsuC2I CCSGG 4 cut(s) 89, 197, 230, 322
AsuHPI GGTGA 1 cut(s) 136
AsuII TTCGAA 1 cut(s) 327
AvaI CYCGRG 1 cut(s) 261
BamHI GGATCC 1 cut(s) 334
BbrPI CACGTG 1 cut(s) 121
BbvI GCAGC 3 cut(s) 150, 424, 430
BciT130I CCWGG 1 cut(s) 143
BcnI CCSGG 4 cut(s) 89, 197, 230, 322
BcoDI GTCTC 3 cut(s) 17, 213, 273
BfoI RGCGCY 1 cut(s) 206
Bme1390I CCNGG 5 cut(s) 89, 143, 197, 230, 322
BmeRI GACNNNNNGTC 1 cut(s) 9
BmeT110I CYCGRG 1 cut(s) 261
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 2 cut(s) 86, 319
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 5 cut(s) 89, 143, 197, 230, 322
BplI GAGNNNNNCTC 4 cut(s) 16, 48, 210, 242
Bpu14I TTCGAA 1 cut(s) 327
BpuMI CCSGG 4 cut(s) 89, 197, 230, 322
BsaAI YACGTR 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 337
BsaXI ACNNNNNCTCC 4 cut(s) 191, 221, 308, 338
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 195
BseAI TCCGGA 1 cut(s) 337
BseBI CCWGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 94, 195
BseMII CTCAG 2 cut(s) 26, 396
BseRI GAGGAG 4 cut(s) 116, 170, 173, 329
BseXI GCAGC 3 cut(s) 150, 424, 430
BsgI GTGCAG 1 cut(s) 401
Bsh1236I CGCG 5 cut(s) 51, 67, 193, 299, 377
BshFI GGCC 2 cut(s) 87, 320
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 5 cut(s) 89, 196, 229, 322, 338
BslFI GGGAC 1 cut(s) 14
BslI CCNNNNNNNGG 2 cut(s) 94, 195
BsmAI GTCTC 3 cut(s) 17, 213, 273
BsmBI CGTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 14
BsnI GGCC 2 cut(s) 87, 320
BsoBI CYCGRG 1 cut(s) 261
Bsp119I TTCGAA 1 cut(s) 327
Bsp13I TCCGGA 1 cut(s) 337
Bsp143I GATC 3 cut(s) 334, 360, 454
Bsp68I TCGCGA 1 cut(s) 51
BspANI GGCC 2 cut(s) 87, 320
BspCNI CTCAG 2 cut(s) 27, 397
BspEI TCCGGA 1 cut(s) 337
BspFNI CGCG 5 cut(s) 51, 67, 193, 299, 377
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 336
BspPI GGATC 2 cut(s) 329, 342
BspT104I TTCGAA 1 cut(s) 327
BssMI GATC 3 cut(s) 334, 360, 454
BssNI GRCGYC 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 97, 462
Bst6I CTCTTC 1 cut(s) 147
BstACI GRCGYC 1 cut(s) 57
BstBAI YACGTR 1 cut(s) 121
BstBI TTCGAA 1 cut(s) 327
BstC8I GCNNGC 3 cut(s) 269, 384, 402
BstDEI CTNAG 2 cut(s) 35, 405
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 5 cut(s) 51, 67, 193, 299, 377
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 2 cut(s) 195, 205
BstKTI GATC 3 cut(s) 337, 363, 457
BstMAI GTCTC 3 cut(s) 17, 213, 273
BstMBI GATC 3 cut(s) 334, 360, 454
BstMWI GCNNNNNNNGC 4 cut(s) 172, 383, 418, 447
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 5 cut(s) 87, 141, 195, 228, 320
BstUI CGCG 5 cut(s) 51, 67, 193, 299, 377
BstV1I GCAGC 3 cut(s) 150, 424, 430
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuRI GGCC 2 cut(s) 87, 320
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 1 cut(s) 151
BtuMI TCGCGA 1 cut(s) 51
Cac8I GCNNGC 3 cut(s) 269, 384, 402
CciI TCATGA 1 cut(s) 370
CfoI GCGC 2 cut(s) 195, 205
Cfr13I GGNCC 2 cut(s) 86, 319
CseI GACGC 1 cut(s) 383
CviAII CATG 2 cut(s) 247, 371
CviJI RGCY 7 cut(s) 39, 73, 87, 106, 163, 320, 400
CviKI_1 RGCY 7 cut(s) 39, 73, 87, 106, 163, 320, 400
DdeI CTNAG 2 cut(s) 35, 405
DpnI GATC 3 cut(s) 336, 362, 456
DpnII GATC 3 cut(s) 334, 360, 454
DraIII CACNNNGTG 1 cut(s) 124
DriI GACNNNNNGTC 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 147
Eam1105I GACNNNNNGTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 147
EciI GGCGGA 1 cut(s) 465
Eco72I CACGTG 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 273
FaeI CATG 2 cut(s) 250, 374
FaiI YATR 3 cut(s) 224, 248, 372
FaqI GGGAC 1 cut(s) 14
FatI CATG 2 cut(s) 246, 370
FokI GGATG 1 cut(s) 158
GlaI GCGC 2 cut(s) 194, 204
HaeII RGCGCY 1 cut(s) 206
HaeIII GGCC 2 cut(s) 87, 320
HapII CCGG 5 cut(s) 89, 196, 229, 322, 338
HgaI GACGC 1 cut(s) 383
HhaI GCGC 2 cut(s) 195, 205
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 2 cut(s) 250, 374
Hin6I GCGC 2 cut(s) 193, 203
HinP1I GCGC 2 cut(s) 193, 203
HinfI GANTC 5 cut(s) 10, 27, 169, 257, 424
HpaII CCGG 5 cut(s) 89, 196, 229, 322, 338
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 252
Hpy188I TCNGA 3 cut(s) 36, 365, 429
Hpy188III TCNNGA 5 cut(s) 16, 50, 261, 338, 371
Hpy8I GTNNAC 1 cut(s) 252
Hpy99I CGWCG 6 cut(s) 10, 51, 56, 59, 62, 238
HpyAV CCTTC 4 cut(s) 50, 77, 298, 424
HpyCH4III ACNGT 2 cut(s) 97, 462
HpyCH4IV ACGT 3 cut(s) 57, 120, 282
HpyCH4V TGCA 1 cut(s) 382
HpyF10VI GCNNNNNNNGC 4 cut(s) 172, 383, 418, 447
HpyF3I CTNAG 2 cut(s) 35, 405
HpySE526I ACGT 3 cut(s) 57, 120, 282
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 2 cut(s) 250, 374
HspAI GCGC 2 cut(s) 193, 203
Kpn2I TCCGGA 1 cut(s) 337
Kzo9I GATC 3 cut(s) 334, 360, 454
LmnI GCTCC 3 cut(s) 103, 160, 433
LpnPI CCDG 9 cut(s) 29, 102, 128, 155, 209, 242, 335, 351, 368
Lsp1109I GCAGC 3 cut(s) 150, 424, 430
MaeII ACGT 3 cut(s) 57, 120, 282
MaeIII GTNAC 1 cut(s) 346
MalI GATC 3 cut(s) 336, 362, 456
MboI GATC 3 cut(s) 334, 360, 454
MboII GAAGA 3 cut(s) 139, 164, 235
MflI RGATCY 1 cut(s) 334
MlyI GAGTC 3 cut(s) 19, 36, 251
MmeI TCCRAC 1 cut(s) 372
MroI TCCGGA 1 cut(s) 337
MroXI GAANNNNTTC 1 cut(s) 308
MslI CAYNNNNRTG 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 415
MspI CCGG 5 cut(s) 89, 196, 229, 322, 338
MspR9I CCNGG 5 cut(s) 89, 143, 197, 230, 322
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 5 cut(s) 51, 67, 193, 299, 377
MwoI GCNNNNNNNGC 4 cut(s) 172, 383, 418, 447
NciI CCSGG 4 cut(s) 89, 197, 230, 322
NdeII GATC 3 cut(s) 334, 360, 454
NlaIII CATG 2 cut(s) 250, 374
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 346
NruI TCGCGA 1 cut(s) 51
NspV TTCGAA 1 cut(s) 327
PaeR7I CTCGAG 1 cut(s) 261
PagI TCATGA 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 2 cut(s) 169, 424
PflFI GACNNNGTC 1 cut(s) 56
PleI GAGTC 3 cut(s) 18, 35, 251
PmaCI CACGTG 1 cut(s) 121
PmlI CACGTG 1 cut(s) 121
PpsI GAGTC 3 cut(s) 18, 35, 251
Ppu21I YACGTR 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 141
PspCI CACGTG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 2 cut(s) 86, 319
PsuI RGATCY 1 cut(s) 334
PsyI GACNNNGTC 1 cut(s) 56
RruI TCGCGA 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 144
Sau3AI GATC 3 cut(s) 334, 360, 454
Sau96I GGNCC 2 cut(s) 86, 319
SchI GAGTC 3 cut(s) 19, 36, 251
ScrFI CCNGG 5 cut(s) 89, 143, 197, 230, 322
SetI ASST 9 cut(s) 60, 108, 123, 144, 165, 242, 285, 370, 402
Sfr274I CTCGAG 1 cut(s) 261
SfuI TTCGAA 1 cut(s) 327
SlaI CTCGAG 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
StyD4I CCNGG 5 cut(s) 87, 141, 195, 228, 320
TaaI ACNGT 2 cut(s) 97, 462
TaiI ACGT 3 cut(s) 60, 123, 285
TaqI TCGA 3 cut(s) 262, 312, 327
TauI GCSGC 8 cut(s) 70, 73, 178, 389, 418, 444, 447, 450
TfiI GAWTC 2 cut(s) 169, 424
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 3 cut(s) 163, 412, 418
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 235
TspGWI ACGGA 3 cut(s) 35, 269, 347
Tth111I GACNNNGTC 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 308
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.