MD08G1008000.v1.1

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0017104
Physical Location & Seq
Forward (+)
634688 .. 635236
549 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1008000.v1.1.491

Sequence Viewer

Length: 549 bp
ATGATGCTTTCGGCCCACCTTACATTTCTCTTTGTATTCTATTTGCTCCAATCTTCTGCAACCCCCCAAGTGAGCAGAGAGATGACCGCGAATCTACAAAAATGTCGAATCCCTCTGAAGCTCATCATCGGGCGCAACGACGCCGTTTTCAATTGTAGCTGGCGTCTATTGCACGAGGGCCCGGACACCGTGGAGGAGCTTCTGGACAGACACATAGTGAAGAAAGAAAAACACCTCGACGAGGAGGAGGAGGAGTTGCTGAATCGGCGGCGACTCACCAGCACTCGGCGGGAGGCGCTGAGTCTGTACCGAGACATAATTAGGGCGACTCGGTTCTTCATGTGGCCGGACTCTCGAGGCGTGCTCTGGCGAGACGTGCTGAGGGAGAACGCTAGGAAGGAGTTCGAGGAGGCCCGATTCGAGACGGATCCGGAAGTTATAACCCGACTGCTCATCGGCGGTCATGATGCGGTGCAGTCGGCGATAGATAAGCTCGCCGAGAAGCAGCGGCAGCAGATTCAGAAGGAGCGAGGAGGCGGTCAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

183

Amino Acids

21.42

Weight (kDa)

6.99

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 97 - 158 2e-10 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017104)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76060
fragaria_vesca FvH4_2g37980
malus_domestica MD08G1008000.v1.1
prunus_persica Prupe.1G359800_v2.0.a1
pyrus_communis pycom08g00650
rosa_chinensis RchiOBHm_Chr6g0303641
rosa_laevigata RLG00000011065
rosa_roxburghii Rroxscaffold_7G00164550
rosa_rugosa Rorug02G0244700 Rorug06G0323200
rosa_samantha Rh6AG437500 Rh6CG449500
rosa_wichuraiana Rw6G037880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 440
AccII CGCG 1 cut(s) 89
AccIII TCCGGA 1 cut(s) 430
AciI CCGC 7 cut(s) 87, 268, 289, 459, 470, 508, 537
AclWI GGATC 2 cut(s) 422, 435
AcoI YGGCCR 1 cut(s) 344
AcuI CTGAAG 1 cut(s) 137
AcyI GRCGYC 2 cut(s) 141, 163
AdeI CACNNNGTG 1 cut(s) 217
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 2 cut(s) 241, 285
AgsI TTSAA 1 cut(s) 151
AjiI CACGTC 1 cut(s) 376
AluBI AGCT 4 cut(s) 121, 159, 199, 493
AluI AGCT 4 cut(s) 121, 159, 199, 493
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 3 cut(s) 306, 366, 416
AlwI GGATC 2 cut(s) 422, 435
Ama87I CYCGRG 1 cut(s) 354
Aor13HI TCCGGA 1 cut(s) 430
AoxI GGCC 4 cut(s) 12, 178, 344, 411
ApaI GGGCCC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 505, 511
Asp700I GAANNNNTTC 1 cut(s) 401
AspLEI GCGC 2 cut(s) 135, 298
AspS9I GGNCC 4 cut(s) 13, 178, 179, 412
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 268
AvaI CYCGRG 1 cut(s) 354
BaeGI GKGCMC 1 cut(s) 182
BamHI GGATCC 1 cut(s) 427
BanII GRGCYC 1 cut(s) 182
BauI CACGAG 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 366
BbvCI CCTCAGC 1 cut(s) 380
BbvI GCAGC 2 cut(s) 517, 523
BceAI ACGGC 1 cut(s) 128
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 3 cut(s) 306, 366, 416
BfaI CTAG 1 cut(s) 393
BfoI RGCGCY 1 cut(s) 299
BisI GCNGC 4 cut(s) 269, 506, 509, 512
BlsI GCNGC 4 cut(s) 270, 507, 510, 513
Bme1390I CCNGG 1 cut(s) 182
BmeT110I CYCGRG 1 cut(s) 354
BmgBI CACGTC 1 cut(s) 376
BmgT120I GGNCC 4 cut(s) 13, 178, 179, 412
BmiI GGNNCC 2 cut(s) 180, 429
BmrFI CCNGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 457
BplI GAGNNNNNCTC 2 cut(s) 348, 380
Bpu10I CCTNAGC 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 182
BsaHI GRCGYC 2 cut(s) 141, 163
BsaJI CCNNGG 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 285
BseAI TCCGGA 1 cut(s) 430
BseDI CCNNGG 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 241, 285
BseMII CTCAG 2 cut(s) 290, 371
BseRI GAGGAG 7 cut(s) 209, 257, 260, 263, 266, 422, 546
BseSI GKGCMC 1 cut(s) 182
BseXI GCAGC 2 cut(s) 517, 523
BsgI GTGCAG 1 cut(s) 494
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 4 cut(s) 14, 180, 346, 413
BsiHKAI GWGCWC 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 3 cut(s) 182, 347, 431
BslI CCNNNNNNNGG 2 cut(s) 241, 285
BsmAI GTCTC 3 cut(s) 306, 366, 416
BsmBI CGTCTC 2 cut(s) 366, 416
BsnI GGCC 4 cut(s) 14, 180, 346, 413
BsoBI CYCGRG 1 cut(s) 354
Bsp120I GGGCCC 1 cut(s) 178
Bsp1286I GDGCHC 2 cut(s) 182, 366
Bsp13I TCCGGA 1 cut(s) 430
Bsp143I GATC 1 cut(s) 427
BspACI CCGC 7 cut(s) 87, 268, 289, 459, 470, 508, 537
BspANI GGCC 4 cut(s) 14, 180, 346, 413
BspCNI CTCAG 2 cut(s) 291, 372
BspEI TCCGGA 1 cut(s) 430
BspFNI CGCG 1 cut(s) 89
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 2 cut(s) 180, 429
BspPI GGATC 2 cut(s) 422, 435
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 1 cut(s) 427
BssNI GRCGYC 2 cut(s) 141, 163
BssSI CACGAG 1 cut(s) 173
Bst2BI CACGAG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 190
BstACI GRCGYC 2 cut(s) 141, 163
BstC8I GCNNGC 3 cut(s) 161, 362, 495
BstDEI CTNAG 2 cut(s) 299, 380
BstDSI CCRYGG 1 cut(s) 189
BstENI CCTNNNNNAGG 1 cut(s) 239
BstFNI CGCG 1 cut(s) 89
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 2 cut(s) 135, 298
BstKTI GATC 1 cut(s) 430
BstMAI GTCTC 3 cut(s) 306, 366, 416
BstMBI GATC 1 cut(s) 427
BstMWI GCNNNNNNNGC 5 cut(s) 169, 265, 295, 376, 511
BstSCI CCNGG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 182
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 2 cut(s) 517, 523
BstX2I RGATCY 1 cut(s) 427
BstYI RGATCY 1 cut(s) 427
BsuRI GGCC 4 cut(s) 14, 180, 346, 413
BtgI CCRYGG 1 cut(s) 189
BtrI CACGTC 1 cut(s) 376
Cac8I GCNNGC 3 cut(s) 161, 362, 495
CciI TCATGA 1 cut(s) 463
CfoI GCGC 2 cut(s) 135, 298
Cfr13I GGNCC 4 cut(s) 13, 178, 179, 412
CseI GACGC 2 cut(s) 149, 152
Csp6I GTAC 1 cut(s) 307
CviAII CATG 2 cut(s) 340, 464
CviJI RGCY 8 cut(s) 14, 121, 159, 180, 199, 346, 413, 493
CviKI_1 RGCY 8 cut(s) 14, 121, 159, 180, 199, 346, 413, 493
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 2 cut(s) 299, 380
DpnI GATC 1 cut(s) 429
DpnII GATC 1 cut(s) 427
DraIII CACNNNGTG 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 344
Eco24I GRGCYC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 137
Eco88I CYCGRG 1 cut(s) 354
EcoNI CCTNNNNNAGG 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 182
Esp3I CGTCTC 2 cut(s) 366, 416
FaeI CATG 2 cut(s) 343, 467
FaiI YATR 5 cut(s) 215, 317, 341, 440, 465
FatI CATG 2 cut(s) 339, 463
FauI CCCGC 1 cut(s) 282
Fnu4HI GCNGC 4 cut(s) 269, 506, 509, 512
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 4 cut(s) 269, 506, 509, 512
FspBI CTAG 1 cut(s) 393
GlaI GCGC 2 cut(s) 134, 297
GluI GCNGC 4 cut(s) 269, 506, 509, 512
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 4 cut(s) 14, 180, 346, 413
HapII CCGG 3 cut(s) 182, 347, 431
HgaI GACGC 2 cut(s) 149, 152
HhaI GCGC 2 cut(s) 135, 298
Hin1I GRCGYC 2 cut(s) 141, 163
Hin1II CATG 2 cut(s) 343, 467
Hin6I GCGC 2 cut(s) 133, 296
HinP1I GCGC 2 cut(s) 133, 296
HinfI GANTC 9 cut(s) 91, 108, 262, 273, 301, 328, 350, 417, 517
HpaII CCGG 3 cut(s) 182, 347, 431
HphI GGTGA 1 cut(s) 268
Hpy188I TCNGA 2 cut(s) 117, 522
Hpy188III TCNNGA 6 cut(s) 203, 354, 421, 431, 464, 542
Hpy99I CGWCG 2 cut(s) 143, 242
HpyAV CCTTC 2 cut(s) 391, 517
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 3 cut(s) 59, 172, 475
HpyF10VI GCNNNNNNNGC 5 cut(s) 169, 265, 295, 376, 511
HpyF3I CTNAG 2 cut(s) 299, 380
HpySE526I ACGT 1 cut(s) 375
Hsp92I GRCGYC 2 cut(s) 141, 163
Hsp92II CATG 2 cut(s) 343, 467
HspAI GCGC 2 cut(s) 133, 296
Kpn2I TCCGGA 1 cut(s) 430
Kzo9I GATC 1 cut(s) 427
LmnI GCTCC 3 cut(s) 51, 196, 526
LpnPI CCDG 7 cut(s) 145, 188, 195, 292, 352, 360, 444
Lsp1109I GCAGC 2 cut(s) 517, 523
LweI GCATC 1 cut(s) 457
MaeI CTAG 1 cut(s) 393
MaeII ACGT 1 cut(s) 375
MalI GATC 1 cut(s) 429
MboI GATC 1 cut(s) 427
MboII GAAGA 3 cut(s) 45, 232, 328
MfeI CAATTG 1 cut(s) 151
MflI RGATCY 1 cut(s) 427
MhlI GDGCHC 2 cut(s) 182, 366
MluCI AATT 2 cut(s) 151, 318
MlyI GAGTC 4 cut(s) 267, 310, 322, 344
MroI TCCGGA 1 cut(s) 430
MroXI GAANNNNTTC 1 cut(s) 401
MseI TTAA 1 cut(s) 547
MspA1I CMGCKG 1 cut(s) 508
MspI CCGG 3 cut(s) 182, 347, 431
MspR9I CCNGG 1 cut(s) 182
MunI CAATTG 1 cut(s) 151
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 5 cut(s) 169, 265, 295, 376, 511
NciI CCSGG 1 cut(s) 182
NdeII GATC 1 cut(s) 427
NlaIII CATG 2 cut(s) 343, 467
NlaIV GGNNCC 2 cut(s) 180, 429
NmeAIII GCCGAG 2 cut(s) 265, 523
PaeR7I CTCGAG 1 cut(s) 354
PagI TCATGA 1 cut(s) 463
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 401
PfeI GAWTC 5 cut(s) 91, 108, 262, 417, 517
PkrI GCNGC 4 cut(s) 270, 507, 510, 513
PleI GAGTC 4 cut(s) 267, 309, 322, 344
PpsI GAGTC 4 cut(s) 267, 309, 322, 344
PsiI TTATAA 1 cut(s) 440
PspN4I GGNNCC 2 cut(s) 180, 429
PspOMI GGGCCC 1 cut(s) 178
PspPI GGNCC 4 cut(s) 13, 178, 179, 412
PsuI RGATCY 1 cut(s) 427
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SaqAI TTAA 1 cut(s) 547
SatI GCNGC 4 cut(s) 269, 506, 509, 512
Sau3AI GATC 1 cut(s) 427
Sau96I GGNCC 4 cut(s) 13, 178, 179, 412
SchI GAGTC 4 cut(s) 267, 310, 322, 344
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 2 cut(s) 182, 366
SetI ASST 7 cut(s) 21, 123, 161, 201, 237, 378, 495
SfaNI GCATC 1 cut(s) 457
Sfr274I CTCGAG 1 cut(s) 354
SlaI CTCGAG 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
Sse9I AATT 2 cut(s) 151, 318
SsiI CCGC 7 cut(s) 87, 268, 289, 459, 470, 508, 537
SspMI CTAG 1 cut(s) 393
StyD4I CCNGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 190
TaiI ACGT 1 cut(s) 378
TaqI TCGA 5 cut(s) 106, 237, 355, 405, 420
TasI AATT 2 cut(s) 151, 318
TauI GCSGC 2 cut(s) 271, 511
TfiI GAWTC 5 cut(s) 91, 108, 262, 417, 517
Tru1I TTAA 1 cut(s) 547
Tru9I TTAA 1 cut(s) 547
TseI GCWGC 2 cut(s) 505, 511
TspDTI ATGAA 1 cut(s) 328
TspGWI ACGGA 1 cut(s) 440
XagI CCTNNNNNAGG 1 cut(s) 239
XhoI CTCGAG 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 401
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.