Prupe.1G359800_v2.0.a1

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017104
Physical Location & Seq
Forward (+)
33210448 .. 33211123
676 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G359800.1

Sequence Viewer

Length: 462 bp
ATGACGACGAGTCTACAGAAATGGCGAATCCCTCTAAGGCTCATCAAGCGCTACGACATCGTTTTTAGTTGTCGCCGGCGCCTATTGCACGAAGGCCCGGACACCATCGAGGAGCTTCTAGACAGGCACATAGTGAAGAAAGAGAAACACCTCGACGATGAGGAGGAGGAGTTGCTGAACCGGCGGCGACTCACCAGCACTCGGCGGGAGGCACTGGGCCTGTATCGTGACATTATCAGGGCGACTCGGTTCTTCATGTGGCCGGACTCTCGGGGCGTGCTTTGGAGAGATGTCCTGAGAGAGAACGCGAGGAAGGAGTTCGAGGAGGCCCGGTTCGAGACGGATCCGCAAATTATTACCCGATTGCTCATCGGTGGGCATGATGCTGTGCAGTCGGCTATAGATAAGCTCGCCGAGAAGCAGAGGCAGCAGATTCAGAAGGAGCGAGGCGGTGGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

154

Amino Acids

18.35

Weight (kDa)

9.41

Isoelectric Point (pI)

62.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017104)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76060
fragaria_vesca FvH4_2g37980
malus_domestica MD08G1008000.v1.1
prunus_persica Prupe.1G359800_v2.0.a1
pyrus_communis pycom08g00650
rosa_chinensis RchiOBHm_Chr6g0303641
rosa_laevigata RLG00000011065
rosa_roxburghii Rroxscaffold_7G00164550
rosa_rugosa Rorug02G0244700 Rorug06G0323200
rosa_samantha Rh6AG437500 Rh6CG449500
rosa_wichuraiana Rw6G037880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 78
AccI GTMKAC 1 cut(s) 13
AccII CGCG 1 cut(s) 308
AciI CCGC 4 cut(s) 184, 205, 347, 450
AclWI GGATC 2 cut(s) 338, 351
AcoI YGGCCR 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 79
AdeI CACNNNGTG 1 cut(s) 133
AfeI AGCGCT 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 201
AhdI GACNNNNNGTC 1 cut(s) 9
AloI GAACNNNNNNTCC 2 cut(s) 317, 349
AluBI AGCT 2 cut(s) 115, 409
AluI AGCT 2 cut(s) 115, 409
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 2 cut(s) 338, 351
Ama87I CYCGRG 1 cut(s) 270
Aor51HI AGCGCT 1 cut(s) 50
AoxI GGCC 4 cut(s) 94, 217, 260, 327
ApeKI GCWGC 1 cut(s) 427
Asp700I GAANNNNTTC 1 cut(s) 317
AspLEI GCGC 2 cut(s) 51, 81
AspS9I GGNCC 3 cut(s) 95, 217, 328
AsuC2I CCSGG 2 cut(s) 98, 331
AsuHPI GGTGA 1 cut(s) 184
AvaI CYCGRG 1 cut(s) 270
BamHI GGATCC 1 cut(s) 343
BanI GGYRCC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 439
BccI CCATC 1 cut(s) 113
BcnI CCSGG 2 cut(s) 98, 331
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 1 cut(s) 119
BfmI CTRYAG 2 cut(s) 14, 399
BfoI RGCGCY 2 cut(s) 52, 82
BisI GCNGC 2 cut(s) 185, 428
BlsI GCNGC 2 cut(s) 186, 429
Bme1390I CCNGG 2 cut(s) 98, 331
BmeRI GACNNNNNGTC 1 cut(s) 9
BmeT110I CYCGRG 1 cut(s) 270
BmgT120I GGNCC 3 cut(s) 95, 217, 328
BmiI GGNNCC 2 cut(s) 80, 345
BmrFI CCNGG 2 cut(s) 98, 331
BmrI ACTGGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 373
BmuI ACTGGG 1 cut(s) 224
BpuMI CCSGG 2 cut(s) 98, 331
BsaHI GRCGYC 1 cut(s) 79
BsaXI ACNNNNNCTCC 4 cut(s) 155, 185, 317, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse118I RCCGGY 2 cut(s) 75, 180
Bse1I ACTGG 1 cut(s) 219
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 219
BseRI GAGGAG 5 cut(s) 125, 176, 179, 182, 338
BseXI GCAGC 1 cut(s) 439
BsgI GTGCAG 1 cut(s) 410
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 4 cut(s) 96, 219, 262, 329
BshNI GGYRCC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 5 cut(s) 76, 98, 181, 263, 331
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 332
BsmBI CGTCTC 1 cut(s) 332
BsnI GGCC 4 cut(s) 96, 219, 262, 329
BsoBI CYCGRG 1 cut(s) 270
Bsp143I GATC 1 cut(s) 343
BspACI CCGC 4 cut(s) 184, 205, 347, 450
BspANI GGCC 4 cut(s) 96, 219, 262, 329
BspCNI CTCAG 1 cut(s) 288
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 2 cut(s) 80, 345
BspPI GGATC 2 cut(s) 338, 351
BspT107I GGYRCC 1 cut(s) 78
BsrFI RCCGGY 2 cut(s) 75, 180
BsrI ACTGG 1 cut(s) 219
BssAI RCCGGY 2 cut(s) 75, 180
BssMI GATC 1 cut(s) 343
BssNI GRCGYC 1 cut(s) 79
BstACI GRCGYC 1 cut(s) 79
BstC8I GCNNGC 3 cut(s) 77, 278, 411
BstDEI CTNAG 2 cut(s) 35, 296
BstFNI CGCG 1 cut(s) 308
BstH2I RGCGCY 2 cut(s) 52, 82
BstHHI GCGC 2 cut(s) 51, 81
BstKTI GATC 1 cut(s) 346
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 4 cut(s) 46, 85, 181, 427
BstSCI CCNGG 2 cut(s) 96, 329
BstSFI CTRYAG 2 cut(s) 14, 399
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 439
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 4 cut(s) 96, 219, 262, 329
BtsIMutI CAGTG 1 cut(s) 212
Cac8I GCNNGC 3 cut(s) 77, 278, 411
CfoI GCGC 2 cut(s) 51, 81
Cfr10I RCCGGY 2 cut(s) 75, 180
Cfr13I GGNCC 3 cut(s) 95, 217, 328
CviAII CATG 2 cut(s) 256, 380
CviJI RGCY 8 cut(s) 40, 96, 115, 219, 262, 329, 398, 409
CviKI_1 RGCY 8 cut(s) 40, 96, 115, 219, 262, 329, 398, 409
DdeI CTNAG 2 cut(s) 35, 296
DinI GGCGCC 1 cut(s) 80
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
DraIII CACNNNGTG 1 cut(s) 133
DriI GACNNNNNGTC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 260
Eam1105I GACNNNNNGTC 1 cut(s) 9
Eco47III AGCGCT 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 270
EgeI GGCGCC 1 cut(s) 80
EheI GGCGCC 1 cut(s) 80
Esp3I CGTCTC 1 cut(s) 332
FaeI CATG 2 cut(s) 259, 383
FaiI YATR 4 cut(s) 131, 257, 381, 401
FatI CATG 2 cut(s) 255, 379
FauI CCCGC 1 cut(s) 198
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 2 cut(s) 185, 428
Fsp4HI GCNGC 2 cut(s) 185, 428
FspBI CTAG 1 cut(s) 119
GlaI GCGC 2 cut(s) 50, 80
GluI GCNGC 2 cut(s) 185, 428
HaeII RGCGCY 2 cut(s) 52, 82
HaeIII GGCC 4 cut(s) 96, 219, 262, 329
HapII CCGG 5 cut(s) 76, 98, 181, 263, 331
HhaI GCGC 2 cut(s) 51, 81
Hin1I GRCGYC 1 cut(s) 79
Hin1II CATG 2 cut(s) 259, 383
Hin6I GCGC 2 cut(s) 49, 79
HinP1I GCGC 2 cut(s) 49, 79
HinfI GANTC 6 cut(s) 10, 27, 189, 244, 266, 433
HpaII CCGG 5 cut(s) 76, 98, 181, 263, 331
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 1 cut(s) 438
Hpy188III TCNNGA 4 cut(s) 119, 227, 295, 337
Hpy8I GTNNAC 1 cut(s) 14
Hpy99I CGWCG 2 cut(s) 10, 158
HpyAV CCTTC 3 cut(s) 86, 307, 433
HpyCH4V TGCA 2 cut(s) 88, 391
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 85, 181, 427
HpyF3I CTNAG 2 cut(s) 35, 296
Hsp92I GRCGYC 1 cut(s) 79
Hsp92II CATG 2 cut(s) 259, 383
HspAI GCGC 2 cut(s) 49, 79
KasI GGCGCC 1 cut(s) 78
KroI GCCGGC 1 cut(s) 75
KroNI GCCGGC 1 cut(s) 77
Kzo9I GATC 1 cut(s) 343
LmnI GCTCC 2 cut(s) 112, 442
Lsp1109I GCAGC 1 cut(s) 439
LweI GCATC 1 cut(s) 373
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 227
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 2 cut(s) 148, 244
MflI RGATCY 1 cut(s) 343
MluCI AATT 1 cut(s) 351
Mly113I GGCGCC 1 cut(s) 79
MlyI GAGTC 4 cut(s) 19, 183, 238, 260
MreI CGCCGGCG 1 cut(s) 75
MroNI GCCGGC 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 317
MseI TTAA 1 cut(s) 460
MspI CCGG 5 cut(s) 76, 98, 181, 263, 331
MspR9I CCNGG 2 cut(s) 98, 331
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 4 cut(s) 46, 85, 181, 427
NaeI GCCGGC 1 cut(s) 77
NarI GGCGCC 1 cut(s) 79
NciI CCSGG 2 cut(s) 98, 331
NdeII GATC 1 cut(s) 343
NgoMIV GCCGGC 1 cut(s) 75
NlaIII CATG 2 cut(s) 259, 383
NlaIV GGNNCC 2 cut(s) 80, 345
NmeAIII GCCGAG 2 cut(s) 181, 439
NmuCI GTSAC 1 cut(s) 227
PdiI GCCGGC 1 cut(s) 77
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 2 cut(s) 27, 433
PkrI GCNGC 2 cut(s) 186, 429
PleI GAGTC 4 cut(s) 18, 183, 238, 260
PluTI GGCGCC 1 cut(s) 82
PpsI GAGTC 4 cut(s) 18, 183, 238, 260
PspN4I GGNNCC 2 cut(s) 80, 345
PspPI GGNCC 3 cut(s) 95, 217, 328
PsuI RGATCY 1 cut(s) 343
SaqAI TTAA 1 cut(s) 460
SatI GCNGC 2 cut(s) 185, 428
Sau3AI GATC 1 cut(s) 343
Sau96I GGNCC 3 cut(s) 95, 217, 328
SchI GAGTC 4 cut(s) 19, 183, 238, 260
ScrFI CCNGG 2 cut(s) 98, 331
SetI ASST 3 cut(s) 117, 153, 411
SfaNI GCATC 1 cut(s) 373
SfcI CTRYAG 2 cut(s) 14, 399
SfoI GGCGCC 1 cut(s) 80
SgrAI CRCCGGYG 1 cut(s) 75
Sse9I AATT 1 cut(s) 351
SsiI CCGC 4 cut(s) 184, 205, 347, 450
SspDI GGCGCC 1 cut(s) 78
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 2 cut(s) 96, 329
TaqI TCGA 4 cut(s) 108, 153, 321, 336
TasI AATT 1 cut(s) 351
TauI GCSGC 1 cut(s) 187
TfiI GAWTC 2 cut(s) 27, 433
Tru1I TTAA 1 cut(s) 460
Tru9I TTAA 1 cut(s) 460
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 1 cut(s) 427
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 1 cut(s) 244
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 1 cut(s) 219
XbaI TCTAGA 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 13
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.