Rorug02G0244700

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017104
Physical Location & Seq
Forward (+)
25415683 .. 25417411
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0244700.1

Sequence Viewer

Length: 810 bp
ATGCTTGGTGGGAATAGTTCCTCTGCTGTTGTTGCTAGTAGTTTAAGCAGGGGAGGAGCCCCGGAGTACTGGTATGTTTTTGAAGTTGTGAAGACATGTCTCATCCTCATGCCTACCAAGTTCAAGCTAGCCGTCCTCAACCATTTTAAGGCTATCTTGGAACTGATCTTGGAGCTGCAACTGCAAAGACCCCCAATTATGATACGCCTCGAATCGTGCCTCCAAAGAGTCTGCCTCCACCCATCTACAGATGTTCCACCACAGCTGTTGCTCGACCTCTTATGCTTGGAGCCAACTATAGTTGAAAAGCTGTGTTCTACTGTTCAAAGCTTACTTGGTTATCACCGCACAAATGCTCCTGCTCTGAGCATGGACCTTGCATTTGAAGTTGTTTCAACCATGTTTGATAAATTAGGGGCATACGCTTCTTACTTCATGAGGGGCACGCTGAAGAACTTGGCAGACATGCACAAGTTGCCTGATGAAGACTTCCCGTTTAGGAAGCAGGCCACTCTTCTTCTAGGATCCCTTGTCGAGGAGAAATGTGGGCTAAATGATGTTAATATTACTGCTGTCCTGCCTCAAGGACAACTCAGGGAACTGCTTGCAGATTTTAGGGGCCTTAAATGCATATCAAGGTCGGAACTTTCTCATCGAAAACAGAAGATGGGGTTAAATATTGAGCCCTTTCTAGGAAGGGACCGGTCAGAGGAGATGAGGGCTGAGGAAGCTACAATTACAGCCATATCTGGTGCAGCGCAAATGACAAAGATTCAAAGAAGATTAAACTTGATAACCAGGCTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

269

Amino Acids

30.09

Weight (kDa)

8.45

Isoelectric Point (pI)

55.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRP12_HEAT PF08161 70 - 179 6.4e-09 Ribosomal RNA-processing protein 12, HEAT repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017104)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76060
fragaria_vesca FvH4_2g37980
malus_domestica MD08G1008000.v1.1
prunus_persica Prupe.1G359800_v2.0.a1
pyrus_communis pycom08g00650
rosa_chinensis RchiOBHm_Chr6g0303641
rosa_laevigata RLG00000011065
rosa_roxburghii Rroxscaffold_7G00164550
rosa_rugosa Rorug02G0244700 Rorug06G0323200
rosa_samantha Rh6AG437500 Rh6CG449500
rosa_wichuraiana Rw6G037880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 346
AclWI GGATC 2 cut(s) 519, 532
AcuI CTGAAG 1 cut(s) 470
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 4 cut(s) 148, 535, 692, 709
AflIII ACRYGT 1 cut(s) 95
AgeI ACCGGT 1 cut(s) 702
AgsI TTSAA 7 cut(s) 83, 124, 305, 326, 386, 396, 776
AjnI CCWGG 1 cut(s) 797
AluBI AGCT 6 cut(s) 127, 175, 265, 310, 330, 731
AluI AGCT 6 cut(s) 127, 175, 265, 310, 330, 731
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 2 cut(s) 519, 532
AoxI GGCC 2 cut(s) 507, 619
ApeKI GCWGC 2 cut(s) 175, 755
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
AsiGI ACCGGT 1 cut(s) 702
AspLEI GCGC 1 cut(s) 760
AspS9I GGNCC 3 cut(s) 373, 619, 700
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 335
AsuNHI GCTAGC 1 cut(s) 127
AvaII GGWCC 2 cut(s) 373, 700
BaeGI GKGCMC 1 cut(s) 446
BamHI GGATCC 1 cut(s) 524
BanII GRGCYC 2 cut(s) 61, 687
BbsI GAAGAC 2 cut(s) 98, 492
BbvCI CCTCAGC 1 cut(s) 723
BbvI GCAGC 2 cut(s) 162, 767
BccI CCATC 2 cut(s) 250, 661
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 799
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 4 cut(s) 36, 128, 521, 692
BfmI CTRYAG 2 cut(s) 246, 297
BisI GCNGC 2 cut(s) 176, 756
BlsI GCNGC 2 cut(s) 177, 757
BmcAI AGTACT 1 cut(s) 68
Bme1390I CCNGG 2 cut(s) 62, 799
Bme18I GGWCC 2 cut(s) 373, 700
BmgT120I GGNCC 3 cut(s) 373, 619, 700
BmiI GGNNCC 5 cut(s) 58, 291, 526, 620, 701
BmrFI CCNGG 2 cut(s) 62, 799
BmtI GCTAGC 1 cut(s) 131
BpiI GAAGAC 2 cut(s) 98, 492
BplI GAGNNNNNCTC 2 cut(s) 219, 251
Bpu10I CCTNAGC 1 cut(s) 723
BpuEI CTTGAG 1 cut(s) 567
BpuMI CCSGG 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 702
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 340, 370
Bsc4I CCNNNNNNNGG 4 cut(s) 148, 535, 692, 709
Bse118I RCCGGY 1 cut(s) 702
Bse1I ACTGG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 799
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 102
BseLI CCNNNNNNNGG 4 cut(s) 148, 535, 692, 709
BseMII CTCAG 3 cut(s) 356, 607, 714
BseNI ACTGG 1 cut(s) 74
BseRI GAGGAG 3 cut(s) 69, 551, 725
BseSI GKGCMC 1 cut(s) 446
BseXI GCAGC 2 cut(s) 162, 767
BsgI GTGCAG 1 cut(s) 774
BshFI GGCC 2 cut(s) 509, 621
BshTI ACCGGT 1 cut(s) 702
BsiSI CCGG 2 cut(s) 62, 703
BslFI GGGAC 1 cut(s) 713
BslI CCNNNNNNNGG 4 cut(s) 148, 535, 692, 709
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 713
BsnI GGCC 2 cut(s) 509, 621
Bsp1286I GDGCHC 3 cut(s) 61, 446, 687
Bsp143I GATC 2 cut(s) 165, 524
BspACI CCGC 1 cut(s) 346
BspANI GGCC 2 cut(s) 509, 621
BspCNI CTCAG 3 cut(s) 357, 606, 715
BspHI TCATGA 1 cut(s) 435
BspLI GGNNCC 5 cut(s) 58, 291, 526, 620, 701
BspOI GCTAGC 1 cut(s) 131
BspPI GGATC 2 cut(s) 519, 532
BsrFI RCCGGY 1 cut(s) 702
BsrI ACTGG 1 cut(s) 74
BssAI RCCGGY 1 cut(s) 702
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 2 cut(s) 165, 524
Bst2UI CCWGG 1 cut(s) 799
Bst4CI ACNGT 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 519
BstAPI GCANNNNNTGC 1 cut(s) 475
BstC8I GCNNGC 4 cut(s) 129, 446, 507, 606
BstDEI CTNAG 3 cut(s) 365, 593, 723
BstENI CCTNNNNNAGG 1 cut(s) 533
BstF5I GGATG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 760
BstKTI GATC 2 cut(s) 168, 527
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 2 cut(s) 165, 524
BstMWI GCNNNNNNNGC 5 cut(s) 32, 181, 475, 627, 728
BstNI CCWGG 1 cut(s) 799
BstNSI RCATGY 2 cut(s) 99, 469
BstSCI CCNGG 2 cut(s) 60, 797
BstSFI CTRYAG 2 cut(s) 246, 297
BstSLI GKGCMC 1 cut(s) 446
BstV1I GCAGC 2 cut(s) 162, 767
BstV2I GAAGAC 2 cut(s) 98, 492
BstX2I RGATCY 1 cut(s) 524
BstYI RGATCY 1 cut(s) 524
BsuRI GGCC 2 cut(s) 509, 621
BtsCI GGATG 1 cut(s) 102
Cac8I GCNNGC 4 cut(s) 129, 446, 507, 606
CciI TCATGA 1 cut(s) 435
CfoI GCGC 1 cut(s) 760
Cfr10I RCCGGY 1 cut(s) 702
Cfr13I GGNCC 3 cut(s) 373, 619, 700
Csp6I GTAC 1 cut(s) 67
CspAI ACCGGT 1 cut(s) 702
CspCI CAANNNNNGTGG 2 cut(s) 249, 284
CviAII CATG 6 cut(s) 96, 109, 370, 400, 436, 466
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 3 cut(s) 365, 593, 723
DpnI GATC 2 cut(s) 167, 526
DpnII GATC 2 cut(s) 165, 524
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Eco24I GRGCYC 2 cut(s) 61, 687
Eco47I GGWCC 2 cut(s) 373, 700
Eco57I CTGAAG 1 cut(s) 470
EcoNI CCTNNNNNAGG 1 cut(s) 533
EcoO109I RGGNCCY 1 cut(s) 619
EcoRII CCWGG 1 cut(s) 797
EcoT22I ATGCAT 1 cut(s) 632
EcoT38I GRGCYC 2 cut(s) 61, 687
FaeI CATG 6 cut(s) 99, 112, 373, 403, 439, 469
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FaqI GGGAC 1 cut(s) 713
FatI CATG 6 cut(s) 95, 108, 369, 399, 435, 465
Fnu4HI GCNGC 2 cut(s) 176, 756
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 2 cut(s) 61, 687
Fsp4HI GCNGC 2 cut(s) 176, 756
FspBI CTAG 4 cut(s) 36, 128, 521, 692
GlaI GCGC 1 cut(s) 759
GluI GCNGC 2 cut(s) 176, 756
HaeIII GGCC 2 cut(s) 509, 621
HapII CCGG 2 cut(s) 62, 703
HhaI GCGC 1 cut(s) 760
Hin1II CATG 6 cut(s) 99, 112, 373, 403, 439, 469
Hin6I GCGC 1 cut(s) 758
HinP1I GCGC 1 cut(s) 758
HindIII AAGCTT 1 cut(s) 328
HinfI GANTC 3 cut(s) 212, 228, 772
HpaII CCGG 2 cut(s) 62, 703
HphI GGTGA 1 cut(s) 335
Hpy188I TCNGA 3 cut(s) 366, 643, 709
Hpy188III TCNNGA 1 cut(s) 436
HpyAV CCTTC 1 cut(s) 690
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4V TGCA 7 cut(s) 178, 184, 380, 469, 608, 630, 755
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 181, 475, 627, 728
HpyF3I CTNAG 3 cut(s) 365, 593, 723
Hsp92II CATG 6 cut(s) 99, 112, 373, 403, 439, 469
HspAI GCGC 1 cut(s) 758
Kzo9I GATC 2 cut(s) 165, 524
LmnI GCTCC 4 cut(s) 56, 172, 289, 361
Lsp1109I GCAGC 2 cut(s) 162, 767
MaeI CTAG 4 cut(s) 36, 128, 521, 692
MalI GATC 2 cut(s) 167, 526
MboI GATC 2 cut(s) 165, 524
MboII GAAGA 7 cut(s) 103, 463, 497, 506, 509, 676, 792
MflI RGATCY 1 cut(s) 524
MhlI GDGCHC 3 cut(s) 61, 446, 687
MluCI AATT 3 cut(s) 195, 410, 735
MlyI GAGTC 1 cut(s) 237
MmeI TCCRAC 1 cut(s) 621
Mph1103I ATGCAT 1 cut(s) 632
MseI TTAA 7 cut(s) 44, 147, 561, 624, 674, 785, 808
MslI CAYNNNNRTG 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 265
MspI CCGG 2 cut(s) 62, 703
MspR9I CCNGG 2 cut(s) 62, 799
MvaI CCWGG 1 cut(s) 799
MwoI GCNNNNNNNGC 5 cut(s) 32, 181, 475, 627, 728
NciI CCSGG 1 cut(s) 62
NdeII GATC 2 cut(s) 165, 524
NheI GCTAGC 1 cut(s) 127
NlaIII CATG 6 cut(s) 99, 112, 373, 403, 439, 469
NlaIV GGNNCC 5 cut(s) 58, 291, 526, 620, 701
NsiI ATGCAT 1 cut(s) 632
NspI RCATGY 2 cut(s) 99, 469
PagI TCATGA 1 cut(s) 435
PciI ACATGT 1 cut(s) 95
PfeI GAWTC 2 cut(s) 212, 772
PinAI ACCGGT 1 cut(s) 702
PkrI GCNGC 2 cut(s) 177, 757
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PscI ACATGT 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 797
PspGI CCWGG 1 cut(s) 797
PspN4I GGNNCC 5 cut(s) 58, 291, 526, 620, 701
PspPI GGNCC 3 cut(s) 373, 619, 700
PsuI RGATCY 1 cut(s) 524
PvuII CAGCTG 1 cut(s) 265
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 7 cut(s) 44, 147, 561, 624, 674, 785, 808
SatI GCNGC 2 cut(s) 176, 756
Sau3AI GATC 2 cut(s) 165, 524
Sau96I GGNCC 3 cut(s) 373, 619, 700
ScaI AGTACT 1 cut(s) 68
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 2 cut(s) 62, 799
SduI GDGCHC 3 cut(s) 61, 446, 687
SetI ASST 9 cut(s) 129, 177, 267, 279, 312, 332, 378, 641, 733
SfcI CTRYAG 2 cut(s) 246, 297
SinI GGWCC 2 cut(s) 373, 700
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
Sse9I AATT 3 cut(s) 195, 410, 735
SsiI CCGC 1 cut(s) 346
SspI AATATT 2 cut(s) 565, 679
SspMI CTAG 4 cut(s) 36, 128, 521, 692
StyD4I CCNGG 2 cut(s) 60, 797
TaaI ACNGT 1 cut(s) 322
TaqI TCGA 4 cut(s) 210, 273, 534, 655
TasI AATT 3 cut(s) 195, 410, 735
TatI WGTACW 1 cut(s) 66
TfiI GAWTC 2 cut(s) 212, 772
Tru1I TTAA 7 cut(s) 44, 147, 561, 624, 674, 785, 808
Tru9I TTAA 7 cut(s) 44, 147, 561, 624, 674, 785, 808
TseI GCWGC 2 cut(s) 175, 755
TspDTI ATGAA 2 cut(s) 424, 498
VpaK11BI GGWCC 2 cut(s) 373, 700
XagI CCTNNNNNAGG 1 cut(s) 533
XceI RCATGY 2 cut(s) 99, 469
XspI CTAG 4 cut(s) 36, 128, 521, 692
ZrmI AGTACT 1 cut(s) 68
Zsp2I ATGCAT 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.