AT1G76065

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009199
Physical Location & Seq
Reverse (-)
28544338 .. 28545708
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76065.1

Sequence Viewer

Length: 243 bp
ATGGTTCAATTAGATCTGCAGAGCTTTATTCTCCGGGCTCGAGTGCTTAAACTTTACCGACAAGCATTGAAGATAGCTCACAGAGCTCCTGTTCATGTTAGAGGGGAACTGAAACAGACTGTTAGGCAAGAGATGGAAAAGAACAGAGACTGCAATGACAAACAAAAGATTCGGTATCTGATTAGTGAAGGTTTAGAGAGAATCAAAGGACTTGATGAGATGTTGGATATGCAGGGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

80

Amino Acids

9.5

Weight (kDa)

9.72

Isoelectric Point (pI)

28.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 14 - 68 1e-15 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 8, 70
AluBI AGCT 3 cut(s) 24, 77, 86
AluI AGCT 3 cut(s) 24, 77, 86
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 141
AlwNI CAGNNNCTG 1 cut(s) 150
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 39
BanII GRGCYC 2 cut(s) 40, 88
Bbv12I GWGCWC 1 cut(s) 88
BccI CCATC 1 cut(s) 127
BcnI CCSGG 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 17
BglII AGATCT 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 35
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 160
BshFI GGCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 88
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 141
BsnI GGCC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 2 cut(s) 40, 88
Bsp143I GATC 1 cut(s) 13
BspANI GGCC 1 cut(s) 237
BspMAI CTGCAG 1 cut(s) 21
BsrDI GCAATG 1 cut(s) 160
BssMI GATC 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 121
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 33
BstSFI CTRYAG 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BsuRI GGCC 1 cut(s) 237
CaiI CAGNNNCTG 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 235
CviAII CATG 1 cut(s) 95
CviJI RGCY 5 cut(s) 24, 38, 77, 86, 237
CviKI_1 RGCY 5 cut(s) 24, 38, 77, 86, 237
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 86
Eco24I GRGCYC 2 cut(s) 40, 88
Eco53kI GAGCTC 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 39
EcoICRI GAGCTC 1 cut(s) 86
EcoT38I GRGCYC 2 cut(s) 40, 88
FaeI CATG 1 cut(s) 98
FaiI YATR 2 cut(s) 96, 230
FatI CATG 1 cut(s) 94
FriOI GRGCYC 2 cut(s) 40, 88
HaeIII GGCC 1 cut(s) 237
HapII CCGG 1 cut(s) 34
Hin1II CATG 1 cut(s) 98
HinfI GANTC 2 cut(s) 169, 201
HpaII CCGG 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 180
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 3 cut(s) 19, 153, 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
Hsp92II CATG 1 cut(s) 98
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 3 cut(s) 47, 102, 218
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 1 cut(s) 82
MflI RGATCY 1 cut(s) 13
MhlI GDGCHC 2 cut(s) 40, 88
MluCI AATT 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 1 cut(s) 95
MseI TTAA 2 cut(s) 48, 241
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 83
NciI CCSGG 1 cut(s) 35
NdeII GATC 1 cut(s) 13
NlaIII CATG 1 cut(s) 98
PaeR7I CTCGAG 1 cut(s) 39
PfeI GAWTC 2 cut(s) 169, 201
Psp124BI GAGCTC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 235
PspXI VCTCGAGB 1 cut(s) 39
PstI CTGCAG 1 cut(s) 21
PstNI CAGNNNCTG 1 cut(s) 150
PsuI RGATCY 1 cut(s) 13
SacI GAGCTC 1 cut(s) 88
SaqAI TTAA 2 cut(s) 48, 241
Sau3AI GATC 1 cut(s) 13
Sau96I GGNCC 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 2 cut(s) 40, 88
SetI ASST 4 cut(s) 26, 79, 88, 193
SfcI CTRYAG 1 cut(s) 17
Sfr274I CTCGAG 1 cut(s) 39
SgeI CNNG 9 cut(s) 46, 47, 51, 53, 74, 101, 107, 140, 224
SlaI CTCGAG 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
Sse9I AATT 1 cut(s) 8
SstI GAGCTC 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 1 cut(s) 40
TasI AATT 1 cut(s) 8
TfiI GAWTC 2 cut(s) 169, 201
Tru1I TTAA 2 cut(s) 48, 241
Tru9I TTAA 2 cut(s) 48, 241
TspDTI ATGAA 1 cut(s) 83
XhoI CTCGAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.