MD08G1007600.v1.1

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0009199
Physical Location & Seq
Forward (+)
603483 .. 605145
1663 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1007600.v1.1.491

Sequence Viewer

Length: 246 bp
ATGGCTAAAGCCCTTGATTTGCAGGACTTCCTTCTCCGCGGTCGAGTCTTGAAGCTTTATAGGCAAGCACTTCGTATAACCCGAAGAGCCCCTGTGGATTCCAGAGGTGAACTAAGATCGATGATTCGACAAGAACTGGAGAACAACCGGCACTGCAATGACAGGCAACGGACTCGTTTTCTGCTTAGTGAAGGATTGGAGAGACTGAAATGTCTCGACGAGATGCTTGACATGCAAGGTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

82

Amino Acids

9.7

Weight (kDa)

10.01

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 15 - 70 1e-14 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 210
AccII CGCG 1 cut(s) 39
AciI CCGC 2 cut(s) 37, 39
AgsI TTSAA 1 cut(s) 52
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 2 cut(s) 196, 218
AsuHPI GGTGA 1 cut(s) 119
BanII GRGCYC 1 cut(s) 91
BcgI CGANNNNNNTGC 4 cut(s) 53, 87, 155, 189
BcoDI GTCTC 2 cut(s) 196, 218
BmsI GCATC 1 cut(s) 213
BpmI CTGGAG 1 cut(s) 158
Bsa29I ATCGAT 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 37
Bse118I RCCGGY 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 163
BseCI ATCGAT 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 37
BseMI GCAATG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 39
Bsh1285I CGRYCG 1 cut(s) 43
BshVI ATCGAT 1 cut(s) 119
BsiEI CGRYCG 1 cut(s) 43
BsiSI CCGG 1 cut(s) 148
BsmAI GTCTC 2 cut(s) 196, 218
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 2 cut(s) 37, 39
BspDI ATCGAT 1 cut(s) 119
BspFNI CGCG 1 cut(s) 39
BspQI GCTCTTC 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 147
BsrI ACTGG 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 1 cut(s) 116
Bst6I CTCTTC 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 113, 185
BstDSI CCRYGG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 1 cut(s) 119
BstMAI GTCTC 2 cut(s) 196, 218
BstMBI GATC 1 cut(s) 116
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 2 cut(s) 61, 232
BstNSI RCATGY 1 cut(s) 235
BstUI CGCG 1 cut(s) 39
Bsu15I ATCGAT 1 cut(s) 119
BsuTUI ATCGAT 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 147
Cfr42I CCGCGG 1 cut(s) 40
ClaI ATCGAT 1 cut(s) 119
CviAII CATG 1 cut(s) 232
CviJI RGCY 4 cut(s) 5, 11, 55, 89
CviKI_1 RGCY 4 cut(s) 5, 11, 55, 89
DdeI CTNAG 2 cut(s) 113, 185
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
DrdI GACNNNNNNGTC 1 cut(s) 210
DseDI GACNNNNNNGTC 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 91
FaeI CATG 1 cut(s) 235
FaiI YATR 3 cut(s) 60, 77, 233
FatI CATG 1 cut(s) 231
FriOI GRGCYC 1 cut(s) 91
GsuI CTGGAG 1 cut(s) 158
HapII CCGG 1 cut(s) 148
Hin1II CATG 1 cut(s) 235
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 4 cut(s) 45, 98, 124, 172
HpaII CCGG 1 cut(s) 148
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 110
Hpy188III TCNNGA 3 cut(s) 49, 102, 215
Hpy8I GTNNAC 1 cut(s) 110
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 41, 185
HpyCH4V TGCA 3 cut(s) 22, 156, 235
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 232
HpyF3I CTNAG 2 cut(s) 113, 185
Hsp92II CATG 1 cut(s) 235
KspI CCGCGG 1 cut(s) 40
Kzo9I GATC 1 cut(s) 116
LguI GCTCTTC 1 cut(s) 79
LpnPI CCDG 6 cut(s) 8, 105, 115, 122, 148, 161
LweI GCATC 1 cut(s) 213
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 91
MlyI GAGTC 2 cut(s) 54, 166
MnlI CCTC 1 cut(s) 98
MslI CAYNNNNRTG 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 39
MspI CCGG 1 cut(s) 148
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 61, 232
NdeII GATC 1 cut(s) 116
NlaIII CATG 1 cut(s) 235
NspI RCATGY 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 79
PfeI GAWTC 2 cut(s) 98, 124
PleI GAGTC 2 cut(s) 53, 166
PpsI GAGTC 2 cut(s) 53, 166
RseI CAYNNNNRTG 1 cut(s) 156
SacII CCGCGG 1 cut(s) 40
SapI GCTCTTC 1 cut(s) 79
Sau3AI GATC 1 cut(s) 116
SchI GAGTC 2 cut(s) 54, 166
SduI GDGCHC 1 cut(s) 91
SetI ASST 3 cut(s) 57, 109, 241
SfaNI GCATC 1 cut(s) 213
Sfr303I CCGCGG 1 cut(s) 40
SgrBI CCGCGG 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 156
SsiI CCGC 2 cut(s) 37, 39
TaqI TCGA 4 cut(s) 43, 119, 127, 216
TfiI GAWTC 2 cut(s) 98, 124
TscAI CASTG 1 cut(s) 158
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 1 cut(s) 158
XceI RCATGY 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.