MD15G1006800.v1.1

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0009199
Physical Location & Seq
Forward (+)
377895 .. 380235
2341 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1006800.v1.1.491

Sequence Viewer

Length: 246 bp
ATGGCTAAAGCCCTTGATTTGCAGGACTTCCTTCTCCGCGGTCGAGTCTTGAAGCTTTATAGGCAAGCACTTAGGATTACCCGAAGAGCCCCCGTTGATTCCAGAGGTGAACTAAGATCGATGATTCGACAGGAACTGGAGAACAACCGGCACTGCAGTGACAGGCAACGGACTCGTTTTATGTTAAGTGAAGGTTTGGAGAGATTGAAACGTCTCGACGAGATGCTTGACATGCAAGGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

82

Amino Acids

9.74

Weight (kDa)

10.69

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 15 - 70 2e-14 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 39
AciI CCGC 2 cut(s) 37, 39
AgsI TTSAA 2 cut(s) 52, 208
AleI CACNNNNGTG 1 cut(s) 156
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 218
AlwNI CAGNNNCTG 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 119
BanII GRGCYC 1 cut(s) 91
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 1 cut(s) 244
BfmI CTRYAG 1 cut(s) 154
BmsI GCATC 1 cut(s) 213
BpmI CTGGAG 1 cut(s) 158
Bsa29I ATCGAT 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 37
Bse118I RCCGGY 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 141
BseCI ATCGAT 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 37
BseNI ACTGG 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 39
Bsh1285I CGRYCG 1 cut(s) 43
BshVI ATCGAT 1 cut(s) 119
BsiEI CGRYCG 1 cut(s) 43
BsiSI CCGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 218
BsmBI CGTCTC 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 2 cut(s) 37, 39
BspDI ATCGAT 1 cut(s) 119
BspFNI CGCG 1 cut(s) 39
BspMAI CTGCAG 1 cut(s) 158
BspQI GCTCTTC 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 147
BsrI ACTGG 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 1 cut(s) 116
Bst6I CTCTTC 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 71, 113
BstDSI CCRYGG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 1 cut(s) 119
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 1 cut(s) 116
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 2 cut(s) 61, 232
BstNSI RCATGY 1 cut(s) 235
BstSFI CTRYAG 1 cut(s) 154
BstUI CGCG 1 cut(s) 39
Bsu15I ATCGAT 1 cut(s) 119
BsuTUI ATCGAT 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 37
BtsI GCAGTG 2 cut(s) 151, 163
BtsIMutI CAGTG 2 cut(s) 151, 163
Cac8I GCNNGC 1 cut(s) 66
CaiI CAGNNNCTG 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 147
Cfr42I CCGCGG 1 cut(s) 40
ClaI ATCGAT 1 cut(s) 119
CviAII CATG 1 cut(s) 232
CviJI RGCY 4 cut(s) 5, 11, 55, 89
CviKI_1 RGCY 4 cut(s) 5, 11, 55, 89
DdeI CTNAG 2 cut(s) 71, 113
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 91
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 1 cut(s) 235
FaiI YATR 3 cut(s) 60, 182, 233
FatI CATG 1 cut(s) 231
FriOI GRGCYC 1 cut(s) 91
FspBI CTAG 1 cut(s) 244
GsuI CTGGAG 1 cut(s) 158
HapII CCGG 1 cut(s) 148
Hin1II CATG 1 cut(s) 235
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 4 cut(s) 45, 98, 124, 172
HpaII CCGG 1 cut(s) 148
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 110
Hpy188III TCNNGA 3 cut(s) 49, 102, 215
Hpy8I GTNNAC 1 cut(s) 110
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 41, 185
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 3 cut(s) 22, 156, 235
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 232
HpyF3I CTNAG 2 cut(s) 71, 113
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 1 cut(s) 235
KspI CCGCGG 1 cut(s) 40
Kzo9I GATC 1 cut(s) 116
LguI GCTCTTC 1 cut(s) 79
LpnPI CCDG 6 cut(s) 8, 115, 116, 122, 148, 161
LweI GCATC 1 cut(s) 213
MaeI CTAG 1 cut(s) 244
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 2 cut(s) 158, 239
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 91
MlyI GAGTC 2 cut(s) 54, 166
MnlI CCTC 1 cut(s) 98
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 39
MspI CCGG 1 cut(s) 148
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 61, 232
NdeII GATC 1 cut(s) 116
NlaIII CATG 1 cut(s) 235
NmuCI GTSAC 2 cut(s) 158, 239
NspI RCATGY 1 cut(s) 235
OliI CACNNNNGTG 1 cut(s) 156
PciSI GCTCTTC 1 cut(s) 79
PfeI GAWTC 2 cut(s) 98, 124
PleI GAGTC 2 cut(s) 53, 166
PpsI GAGTC 2 cut(s) 53, 166
PstI CTGCAG 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 156
SacII CCGCGG 1 cut(s) 40
SapI GCTCTTC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 185
Sau3AI GATC 1 cut(s) 116
SchI GAGTC 2 cut(s) 54, 166
SduI GDGCHC 1 cut(s) 91
SetI ASST 5 cut(s) 57, 109, 196, 214, 241
SfaNI GCATC 1 cut(s) 213
SfcI CTRYAG 1 cut(s) 154
Sfr303I CCGCGG 1 cut(s) 40
SgrBI CCGCGG 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 156
SsiI CCGC 2 cut(s) 37, 39
SspMI CTAG 1 cut(s) 244
TaiI ACGT 1 cut(s) 214
TaqI TCGA 4 cut(s) 43, 119, 127, 216
TfiI GAWTC 2 cut(s) 98, 124
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 2 cut(s) 158, 163
TseFI GTSAC 2 cut(s) 158, 239
Tsp45I GTSAC 2 cut(s) 158, 239
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 2 cut(s) 158, 163
XceI RCATGY 1 cut(s) 235
XspI CTAG 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.