Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009199

Physical Location & Seq

Genomic Coordinates Forward (+)

319671 .. 320319

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g00540.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTACAAATTAAGACCAATTGAAGGCCCGATAACATTGGCCAATCCACAAGGCGACCGCGAACTCCTCGTACAGTCAAGCTCCCGCTACTGCTACTACTCCTACGTGTTGGGGTTATGGCTAAAGCCCTTGATTTGCAGGACTTCCTTATCCGCGGTCGAAGCCCCCGTTGATTCCAGAGGTGAACTAAGATCAATGATTCGACAGGAACTGGAGAACAACAGGCGCTGCAATGACAGGCAACGGACTCGTTTTCTGCTTAGTGAAGGTTTGGAGAGACTGAAACGTCTCGACGACATGCCTGACATGCAAGGTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

107

Amino Acids

12.42

Weight (kDa)

8.93

Isoelectric Point (pI)

59.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76065
fragaria_vesca	FvH4_2g37960 FvH4_2g37960 FvH4_2g37960 FvH4_2g37960 FvH4_2g37960
malus_domestica	MD08G1007600.v1.1 MD15G1006800.v1.1
prunus_persica	Prupe.1G359500_v2.0.a1 Prupe.1G359500_v2.0.a1
pyrus_communis	pycom08g00630 pycom15g00540
rosa_chinensis	RchiOBHm_Chr6g0303661
rosa_multiflora	Rmu_sc0013443.1_g000005 Rmu_ssc0000114.1_g000015
rosa_rugosa	Rorug06G0323500 Rorug06G0323600
rosa_samantha	Rh6AG437800 Rh6BG465300 Rh6CG449900 Rh6DG436700
rosa_wichuraiana	Rw6G037900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	285
AccII	CGCG	2 cut(s)	60, 155
AciI	CCGC	4 cut(s)	58, 85, 153, 155
AcoI	YGGCCR	1 cut(s)	39
AfaI	GTAC	2 cut(s)	5, 72
AfiI	CCNNNNNNNGG	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	23
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	271, 293
AlwNI	CAGNNNCTG	2 cut(s)	211, 228
AoxI	GGCC	2 cut(s)	25, 39
ApeKI	GCWGC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	194
BalI	TGGCCA	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	215
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BcoDI	GTCTC	2 cut(s)	271, 293
BfaI	CTAG	1 cut(s)	319
BfoI	RGCGCY	1 cut(s)	229
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	26
BpmI	CTGGAG	1 cut(s)	233
BsaAI	YACGTR	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	216
Bse3DI	GCAATG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMI	GCAATG	1 cut(s)	238
BseNI	ACTGG	1 cut(s)	216
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	215
Bsh1236I	CGCG	2 cut(s)	60, 155
Bsh1285I	CGRYCG	2 cut(s)	58, 159
BshFI	GGCC	2 cut(s)	27, 41
BsiEI	CGRYCG	2 cut(s)	58, 159
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	2 cut(s)	271, 293
BsmBI	CGTCTC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	27, 41
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	191
BspACI	CCGC	4 cut(s)	58, 85, 153, 155
BspANI	GGCC	2 cut(s)	27, 41
BspFNI	CGCG	2 cut(s)	60, 155
BsrDI	GCAATG	1 cut(s)	238
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	75
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	188, 260
BstDSI	CCRYGG	1 cut(s)	153
BstFNI	CGCG	2 cut(s)	60, 155
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	1 cut(s)	194
BstMAI	GTCTC	2 cut(s)	271, 293
BstMBI	GATC	1 cut(s)	191
BstMCI	CGRYCG	2 cut(s)	58, 159
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 307
BstNSI	RCATGY	2 cut(s)	301, 310
BstUI	CGCG	2 cut(s)	60, 155
BstV1I	GCAGC	1 cut(s)	215
BsuRI	GGCC	2 cut(s)	27, 41
BtgI	CCRYGG	1 cut(s)	153
CaiI	CAGNNNCTG	2 cut(s)	211, 228
CfoI	GCGC	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	26
Cfr42I	CCGCGG	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	4, 71
CviAII	CATG	2 cut(s)	298, 307
CviJI	RGCY	6 cut(s)	27, 41, 81, 121, 127, 164
CviKI_1	RGCY	6 cut(s)	27, 41, 81, 121, 127, 164
CviQI	GTAC	2 cut(s)	4, 71
DdeI	CTNAG	2 cut(s)	188, 260
DpnI	GATC	1 cut(s)	193
DpnII	GATC	1 cut(s)	191
DrdI	GACNNNNNNGTC	1 cut(s)	285
DseDI	GACNNNNNNGTC	1 cut(s)	285
EaeI	YGGCCR	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	2 cut(s)	301, 310
FaiI	YATR	3 cut(s)	118, 299, 308
FatI	CATG	2 cut(s)	297, 306
FauI	CCCGC	1 cut(s)	92
Fnu4HI	GCNGC	1 cut(s)	229
Fsp4HI	GCNGC	1 cut(s)	229
FspBI	CTAG	1 cut(s)	319
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	1 cut(s)	229
GsuI	CTGGAG	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	2 cut(s)	27, 41
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	301, 310
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HinfI	GANTC	3 cut(s)	173, 199, 247
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188III	TCNNGA	2 cut(s)	177, 290
Hpy8I	GTNNAC	1 cut(s)	185
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	2 cut(s)	17, 260
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4IV	ACGT	2 cut(s)	105, 286
HpyCH4V	TGCA	3 cut(s)	138, 231, 310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 307
HpyF3I	CTNAG	2 cut(s)	188, 260
HpySE526I	ACGT	2 cut(s)	105, 286
Hsp92II	CATG	2 cut(s)	301, 310
HspAI	GCGC	1 cut(s)	226
KspI	CCGCGG	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	7 cut(s)	124, 190, 191, 197, 208, 223, 315
Lsp1109I	GCAGC	1 cut(s)	215
MaeI	CTAG	1 cut(s)	319
MaeII	ACGT	2 cut(s)	105, 286
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	1 cut(s)	193
MboI	GATC	1 cut(s)	191
MfeI	CAATTG	1 cut(s)	18
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	2 cut(s)	8, 18
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	2 cut(s)	77, 173
Mox20I	TGGCCA	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	155
MunI	CAATTG	1 cut(s)	18
MvnI	CGCG	2 cut(s)	60, 155
MwoI	GCNNNNNNNGC	2 cut(s)	161, 307
NdeII	GATC	1 cut(s)	191
NlaIII	CATG	2 cut(s)	301, 310
NmuCI	GTSAC	1 cut(s)	314
NspI	RCATGY	2 cut(s)	301, 310
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	173, 199
PkrI	GCNGC	1 cut(s)	230
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
Ppu21I	YACGTR	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	26
PsrI	GAACNNNNNNTAC	2 cut(s)	54, 86
PstNI	CAGNNNCTG	2 cut(s)	211, 228
RsaI	GTAC	2 cut(s)	5, 72
RsaNI	GTAC	2 cut(s)	4, 71
SacII	CCGCGG	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	1 cut(s)	191
Sau96I	GGNCC	1 cut(s)	26
SchI	GAGTC	1 cut(s)	241
SetI	ASST	6 cut(s)	83, 108, 184, 271, 289, 316
Sfr303I	CCGCGG	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	156
Sse9I	AATT	2 cut(s)	8, 18
SsiI	CCGC	4 cut(s)	58, 85, 153, 155
SspMI	CTAG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	75
TaiI	ACGT	2 cut(s)	108, 289
TaqI	TCGA	3 cut(s)	159, 202, 291
TasI	AATT	2 cut(s)	8, 18
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	173, 199
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	1 cut(s)	228
Tsp45I	GTSAC	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	259
XceI	RCATGY	2 cut(s)	301, 310
XspI	CTAG	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.