FvH4_2g37960

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009199
Physical Location & Seq
Forward (+)
27537017 .. 27538325
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37960.t1

Sequence Viewer

Length: 270 bp
ATGCAAAAAGAGCCGATTATGGCTCTTGCCTTTGATTTGCAGGACTTCCTTATCCGCGCTCGAGTCTTGAAGCTGTACAGGCAAGCACTAAGGGTTACTCGAAGAGCCCCTGTTGATGCTAGAGGTGAACTTAGAACGACGATTAGACAAGAAATGGAGAATAGTCGTGACTGCAATGACAGGCAGAAGATTCGTTATTTACTTAGTGAAGGACAAGAGAGATTAAAACGTCTAGATGAGATGCTTGACATGCAAGGCCATCCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

90

Amino Acids

10.67

Weight (kDa)

9.42

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 21 - 76 2.1e-15 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 57
AciI CCGC 1 cut(s) 55
AfaI GTAC 1 cut(s) 77
AgsI TTSAA 1 cut(s) 70
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 1 cut(s) 256
AspLEI GCGC 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 60
BanII GRGCYC 1 cut(s) 109
BccI CCATC 1 cut(s) 267
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BfaI CTAG 2 cut(s) 120, 233
BmeT110I CYCGRG 1 cut(s) 60
BmsI GCATC 2 cut(s) 106, 231
Bse3DI GCAATG 1 cut(s) 181
BseGI GGATG 1 cut(s) 259
BseMI GCAATG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 60
BsnI GGCC 1 cut(s) 258
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 109
Bsp1407I TGTACA 1 cut(s) 75
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 256
BspFNI CGCG 1 cut(s) 57
BspQI GCTCTTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 181
BsrGI TGTACA 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 97
BstAUI TGTACA 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 4 cut(s) 89, 131, 203, 264
BstF5I GGATG 1 cut(s) 259
BstFNI CGCG 1 cut(s) 57
BstHHI GCGC 1 cut(s) 59
BstMWI GCNNNNNNNGC 3 cut(s) 10, 79, 250
BstNSI RCATGY 1 cut(s) 253
BstUI CGCG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 258
BtsCI GGATG 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 84
CfoI GCGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 76
CviAII CATG 1 cut(s) 250
CviJI RGCY 5 cut(s) 13, 23, 73, 107, 258
CviKI_1 RGCY 5 cut(s) 13, 23, 73, 107, 258
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 4 cut(s) 89, 131, 203, 264
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Eco24I GRGCYC 1 cut(s) 109
Eco88I CYCGRG 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 109
FaeI CATG 1 cut(s) 253
FaiI YATR 2 cut(s) 20, 251
FatI CATG 1 cut(s) 249
FokI GGATG 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 109
FspBI CTAG 2 cut(s) 120, 233
GlaI GCGC 1 cut(s) 58
HaeIII GGCC 1 cut(s) 258
HhaI GCGC 1 cut(s) 59
Hin1II CATG 1 cut(s) 253
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HinfI GANTC 2 cut(s) 63, 190
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 128
Hpy188III TCNNGA 4 cut(s) 67, 167, 233, 263
Hpy8I GTNNAC 1 cut(s) 128
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 203
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 4 cut(s) 4, 40, 174, 253
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 79, 250
HpyF3I CTNAG 4 cut(s) 89, 131, 203, 264
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 1 cut(s) 253
HspAI GCGC 1 cut(s) 57
LguI GCTCTTC 1 cut(s) 97
LpnPI CCDG 4 cut(s) 26, 64, 123, 166
LweI GCATC 2 cut(s) 106, 231
MaeI CTAG 2 cut(s) 120, 233
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 2 cut(s) 94, 167
MboII GAAGA 2 cut(s) 114, 199
MhlI GDGCHC 1 cut(s) 109
MlyI GAGTC 1 cut(s) 72
MnlI CCTC 1 cut(s) 116
MseI TTAA 1 cut(s) 224
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 3 cut(s) 10, 79, 250
NlaIII CATG 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 167
NspI RCATGY 1 cut(s) 253
PaeR7I CTCGAG 1 cut(s) 60
PciSI GCTCTTC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 190
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PspXI VCTCGAGB 1 cut(s) 60
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SapI GCTCTTC 1 cut(s) 97
SaqAI TTAA 1 cut(s) 224
SchI GAGTC 1 cut(s) 72
SduI GDGCHC 1 cut(s) 109
SetI ASST 3 cut(s) 75, 127, 232
SfaNI GCATC 2 cut(s) 106, 231
Sfr274I CTCGAG 1 cut(s) 60
SlaI CTCGAG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
SsiI CCGC 1 cut(s) 55
SspMI CTAG 2 cut(s) 120, 233
TaiI ACGT 1 cut(s) 232
TaqI TCGA 2 cut(s) 61, 100
TatI WGTACW 1 cut(s) 75
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TseFI GTSAC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 167
XbaI TCTAGA 1 cut(s) 232
XceI RCATGY 1 cut(s) 253
XhoI CTCGAG 1 cut(s) 60
XspI CTAG 2 cut(s) 120, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.