Major Facilitator Superfamily
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G78130 |
| fragaria_vesca | FvH4_5g37680 |
| malus_domestica | MD08G1181400.v1.1 |
| prunus_persica | Prupe.1G514700_v2.0.a1 Prupe.1G514700_v2.0.a1 |
| pyrus_communis | pycom15g32900 |
| rosa_chinensis | RchiOBHm_Chr7g0239341 |
| rosa_laevigata | RLG00000000761 |
| rosa_multiflora | Rmu_sc0008456.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00220990 |
| rosa_rugosa | Rorug07G0327600 Rorug07G0327700 |
| rosa_samantha | Rh7AG480900 Rh7BG453500 Rh7CG498800 Rh7DG466900 |
| rosa_wichuraiana | Rw7G040300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 928 |
| AccI | GTMKAC | 3 cut(s) | 84, 863, 1089 |
| AccII | CGCG | 1 cut(s) | 899 |
| AccIII | TCCGGA | 1 cut(s) | 881 |
| AciI | CCGC | 6 cut(s) | 8, 165, 246, 438, 926, 1283 |
| AclI | AACGTT | 1 cut(s) | 140 |
| AclWI | GGATC | 6 cut(s) | 110, 144, 557, 721, 916, 956 |
| AcoI | YGGCCR | 1 cut(s) | 192 |
| AcuI | CTGAAG | 1 cut(s) | 1209 |
| AfaI | GTAC | 2 cut(s) | 388, 628 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 129, 881, 1145, 1282 |
| AflIII | ACRYGT | 1 cut(s) | 1162 |
| AgsI | TTSAA | 1 cut(s) | 161 |
| AjnI | CCWGG | 5 cut(s) | 76, 285, 484, 604, 1152 |
| AleI | CACNNNNGTG | 1 cut(s) | 748 |
| Alw21I | GWGCWC | 3 cut(s) | 214, 307, 1345 |
| Alw26I | GTCTC | 3 cut(s) | 5, 354, 1398 |
| AlwI | GGATC | 6 cut(s) | 110, 144, 557, 721, 916, 956 |
| Ama87I | CYCGRG | 1 cut(s) | 128 |
| Aor13HI | TCCGGA | 1 cut(s) | 881 |
| AoxI | GGCC | 1 cut(s) | 192 |
| ApeKI | GCWGC | 8 cut(s) | 22, 182, 248, 812, 932, 974, 1235, 1290 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1091, 1123 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1383 |
| AspLEI | GCGC | 1 cut(s) | 901 |
| AspS9I | GGNCC | 2 cut(s) | 243, 646 |
| AsuC2I | CCSGG | 1 cut(s) | 650 |
| AsuHPI | GGTGA | 1 cut(s) | 646 |
| AsuII | TTCGAA | 1 cut(s) | 596 |
| AvaI | CYCGRG | 1 cut(s) | 128 |
| AvaII | GGWCC | 2 cut(s) | 243, 646 |
| BalI | TGGCCA | 1 cut(s) | 194 |
| BanII | GRGCYC | 2 cut(s) | 214, 307 |
| BbsI | GAAGAC | 2 cut(s) | 863, 1434 |
| Bbv12I | GWGCWC | 3 cut(s) | 214, 307, 1345 |
| BbvCI | CCTCAGC | 1 cut(s) | 916 |
| BbvI | GCAGC | 8 cut(s) | 9, 169, 235, 799, 919, 961, 1247, 1277 |
| BccI | CCATC | 5 cut(s) | 393, 575, 790, 973, 1342 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4, 38 |
| BciT130I | CCWGG | 5 cut(s) | 78, 287, 486, 606, 1154 |
| BciVI | GTATCC | 1 cut(s) | 1166 |
| BclI | TGATCA | 1 cut(s) | 519 |
| BcnI | CCSGG | 1 cut(s) | 650 |
| BcoDI | GTCTC | 3 cut(s) | 5, 354, 1398 |
| BfaI | CTAG | 5 cut(s) | 38, 300, 542, 1328, 1467 |
| BfmI | CTRYAG | 3 cut(s) | 969, 1140, 1266 |
| BfuI | GTATCC | 1 cut(s) | 1166 |
| Bme1390I | CCNGG | 6 cut(s) | 78, 287, 486, 606, 650, 1154 |
| Bme18I | GGWCC | 2 cut(s) | 243, 646 |
| BmeT110I | CYCGRG | 1 cut(s) | 128 |
| BmgT120I | GGNCC | 2 cut(s) | 243, 646 |
| BmiI | GGNNCC | 1 cut(s) | 336 |
| BmrFI | CCNGG | 6 cut(s) | 78, 287, 486, 606, 650, 1154 |
| BmsI | GCATC | 4 cut(s) | 364, 824, 1247, 1362 |
| BoxI | GACNNNNGTC | 1 cut(s) | 130 |
| BpiI | GAAGAC | 2 cut(s) | 863, 1434 |
| BpmI | CTGGAG | 1 cut(s) | 321 |
| Bpu10I | CCTNAGC | 3 cut(s) | 178, 699, 916 |
| Bpu14I | TTCGAA | 1 cut(s) | 596 |
| BpuMI | CCSGG | 1 cut(s) | 650 |
| BsaJI | CCNNGG | 4 cut(s) | 153, 382, 722, 982 |
| BsaWI | WCCGGW | 2 cut(s) | 122, 881 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 129, 881, 1145, 1282 |
| Bse1I | ACTGG | 1 cut(s) | 1101 |
| BseAI | TCCGGA | 1 cut(s) | 881 |
| BseBI | CCWGG | 5 cut(s) | 78, 287, 486, 606, 1154 |
| BseDI | CCNNGG | 4 cut(s) | 153, 382, 722, 982 |
| BseGI | GGATG | 3 cut(s) | 404, 586, 1353 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 129, 881, 1145, 1282 |
| BseMII | CTCAG | 3 cut(s) | 713, 930, 1359 |
| BseNI | ACTGG | 1 cut(s) | 1101 |
| BseXI | GCAGC | 8 cut(s) | 9, 169, 235, 799, 919, 961, 1247, 1277 |
| Bsh1236I | CGCG | 1 cut(s) | 899 |
| BshFI | GGCC | 1 cut(s) | 194 |
| BsiHKAI | GWGCWC | 3 cut(s) | 214, 307, 1345 |
| BsiHKCI | CYCGRG | 1 cut(s) | 128 |
| BsiSI | CCGG | 4 cut(s) | 42, 123, 649, 882 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 129, 881, 1145, 1282 |
| BsmAI | GTCTC | 3 cut(s) | 5, 354, 1398 |
| BsmBI | CGTCTC | 1 cut(s) | 5 |
| BsmI | GAATGC | 3 cut(s) | 788, 1030, 1237 |
| BsnI | GGCC | 1 cut(s) | 194 |
| BsoBI | CYCGRG | 1 cut(s) | 128 |
| Bsp119I | TTCGAA | 1 cut(s) | 596 |
| Bsp1286I | GDGCHC | 3 cut(s) | 214, 307, 1345 |
| Bsp13I | TCCGGA | 1 cut(s) | 881 |
| Bsp1407I | TGTACA | 1 cut(s) | 626 |
| Bsp19I | CCATGG | 2 cut(s) | 153, 982 |
| BspACI | CCGC | 6 cut(s) | 8, 165, 246, 438, 926, 1283 |
| BspANI | GGCC | 1 cut(s) | 194 |
| BspCNI | CTCAG | 3 cut(s) | 712, 929, 1360 |
| BspEI | TCCGGA | 1 cut(s) | 881 |
| BspFNI | CGCG | 1 cut(s) | 899 |
| BspLI | GGNNCC | 1 cut(s) | 336 |
| BspPI | GGATC | 6 cut(s) | 110, 144, 557, 721, 916, 956 |
| BspQI | GCTCTTC | 1 cut(s) | 111 |
| BspT104I | TTCGAA | 1 cut(s) | 596 |
| BsrBI | CCGCTC | 1 cut(s) | 928 |
| BsrGI | TGTACA | 1 cut(s) | 626 |
| BsrI | ACTGG | 1 cut(s) | 1101 |
| BssECI | CCNNGG | 4 cut(s) | 153, 382, 722, 982 |
| BssNAI | GTATAC | 1 cut(s) | 85 |
| BssT1I | CCWWGG | 3 cut(s) | 153, 722, 982 |
| Bst1107I | GTATAC | 1 cut(s) | 85 |
| Bst2UI | CCWGG | 5 cut(s) | 78, 287, 486, 606, 1154 |
| Bst4CI | ACNGT | 3 cut(s) | 383, 664, 1316 |
| Bst6I | CTCTTC | 2 cut(s) | 111, 277 |
| BstAUI | TGTACA | 1 cut(s) | 626 |
| BstBI | TTCGAA | 1 cut(s) | 596 |
| BstC8I | GCNNGC | 4 cut(s) | 169, 440, 930, 1288 |
| BstDEI | CTNAG | 5 cut(s) | 178, 699, 916, 994, 1368 |
| BstDSI | CCRYGG | 3 cut(s) | 153, 382, 982 |
| BstF5I | GGATG | 3 cut(s) | 404, 586, 1353 |
| BstFNI | CGCG | 1 cut(s) | 899 |
| BstHHI | GCGC | 1 cut(s) | 901 |
| BstMAI | GTCTC | 3 cut(s) | 5, 354, 1398 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 191, 230, 332, 444, 1244 |
| BstNI | CCWGG | 5 cut(s) | 78, 287, 486, 606, 1154 |
| BstNSI | RCATGY | 1 cut(s) | 1166 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 130 |
| BstSCI | CCNGG | 6 cut(s) | 76, 285, 484, 604, 648, 1152 |
| BstSFI | CTRYAG | 3 cut(s) | 969, 1140, 1266 |
| BstUI | CGCG | 1 cut(s) | 899 |
| BstV1I | GCAGC | 8 cut(s) | 9, 169, 235, 799, 919, 961, 1247, 1277 |
| BstV2I | GAAGAC | 2 cut(s) | 863, 1434 |
| BstZ17I | GTATAC | 1 cut(s) | 85 |
| BsuI | GTATCC | 1 cut(s) | 1166 |
| BsuRI | GGCC | 1 cut(s) | 194 |
| BtgI | CCRYGG | 3 cut(s) | 153, 382, 982 |
| BtsCI | GGATG | 3 cut(s) | 404, 586, 1353 |
| BtsI | GCAGTG | 1 cut(s) | 300 |
| BtsIMutI | CAGTG | 3 cut(s) | 300, 529, 1094 |
| Cac8I | GCNNGC | 4 cut(s) | 169, 440, 930, 1288 |
| CfoI | GCGC | 1 cut(s) | 901 |
| Cfr13I | GGNCC | 2 cut(s) | 243, 646 |
| CseI | GACGC | 2 cut(s) | 28, 1075 |
| CsiI | ACCWGGT | 2 cut(s) | 484, 604 |
| Csp6I | GTAC | 2 cut(s) | 387, 627 |
| CviAII | CATG | 5 cut(s) | 154, 190, 983, 1163, 1445 |
| CviQI | GTAC | 2 cut(s) | 387, 627 |
| DdeI | CTNAG | 5 cut(s) | 178, 699, 916, 994, 1368 |
| EaeI | YGGCCR | 1 cut(s) | 192 |
| Eam1104I | CTCTTC | 2 cut(s) | 111, 277 |
| EarI | CTCTTC | 2 cut(s) | 111, 277 |
| EciI | GGCGGA | 1 cut(s) | 23 |
| Ecl136II | GAGCTC | 2 cut(s) | 212, 305 |
| Eco130I | CCWWGG | 3 cut(s) | 153, 722, 982 |
| Eco24I | GRGCYC | 2 cut(s) | 214, 307 |
| Eco47I | GGWCC | 2 cut(s) | 243, 646 |
| Eco53kI | GAGCTC | 2 cut(s) | 212, 305 |
| Eco57I | CTGAAG | 1 cut(s) | 1209 |
| Eco88I | CYCGRG | 1 cut(s) | 128 |
| EcoICRI | GAGCTC | 2 cut(s) | 212, 305 |
| EcoRII | CCWGG | 5 cut(s) | 76, 285, 484, 604, 1152 |
| EcoT14I | CCWWGG | 3 cut(s) | 153, 722, 982 |
| EcoT38I | GRGCYC | 2 cut(s) | 214, 307 |
| ErhI | CCWWGG | 3 cut(s) | 153, 722, 982 |
| Esp3I | CGTCTC | 1 cut(s) | 5 |
| FaeI | CATG | 5 cut(s) | 157, 193, 986, 1166, 1448 |
| FatI | CATG | 5 cut(s) | 153, 189, 982, 1162, 1444 |
| FauI | CCCGC | 2 cut(s) | 431, 933 |
| FbaI | TGATCA | 1 cut(s) | 519 |
| FblI | GTMKAC | 3 cut(s) | 84, 863, 1089 |
| FokI | GGATG | 3 cut(s) | 411, 593, 1360 |
| FriOI | GRGCYC | 2 cut(s) | 214, 307 |
| FspBI | CTAG | 5 cut(s) | 38, 300, 542, 1328, 1467 |
| GlaI | GCGC | 1 cut(s) | 900 |
| GsuI | CTGGAG | 1 cut(s) | 321 |
| HaeIII | GGCC | 1 cut(s) | 194 |
| HapII | CCGG | 4 cut(s) | 42, 123, 649, 882 |
| HgaI | GACGC | 2 cut(s) | 28, 1075 |
| HhaI | GCGC | 1 cut(s) | 901 |
| Hin1II | CATG | 5 cut(s) | 157, 193, 986, 1166, 1448 |
| Hin6I | GCGC | 1 cut(s) | 899 |
| HinP1I | GCGC | 1 cut(s) | 899 |
| HincII | GTYRAC | 2 cut(s) | 1206, 1450 |
| HindII | GTYRAC | 2 cut(s) | 1206, 1450 |
| HindIII | AAGCTT | 1 cut(s) | 1353 |
| HpaI | GTTAAC | 1 cut(s) | 1450 |
| HpaII | CCGG | 4 cut(s) | 42, 123, 649, 882 |
| HphI | GGTGA | 1 cut(s) | 646 |
| Hpy166II | GTNNAC | 6 cut(s) | 85, 864, 1090, 1206, 1379, 1450 |
| Hpy188I | TCNGA | 5 cut(s) | 309, 687, 990, 1347, 1369 |
| Hpy188III | TCNNGA | 8 cut(s) | 300, 793, 882, 1067, 1077, 1328, 1388, 1403 |
| Hpy8I | GTNNAC | 6 cut(s) | 85, 864, 1090, 1206, 1379, 1450 |
| HpyAV | CCTTC | 3 cut(s) | 571, 631, 1184 |
| HpyCH4III | ACNGT | 3 cut(s) | 383, 664, 1316 |
| HpyCH4IV | ACGT | 2 cut(s) | 140, 216 |
| HpyCH4V | TGCA | 9 cut(s) | 233, 743, 788, 815, 935, 977, 1133, 1235, 1439 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 191, 230, 332, 444, 1244 |
| HpyF3I | CTNAG | 5 cut(s) | 178, 699, 916, 994, 1368 |
| HpySE526I | ACGT | 2 cut(s) | 140, 216 |
| Hsp92II | CATG | 5 cut(s) | 157, 193, 986, 1166, 1448 |
| HspAI | GCGC | 1 cut(s) | 899 |
| Kpn2I | TCCGGA | 1 cut(s) | 881 |
| Ksp22I | TGATCA | 1 cut(s) | 519 |
| KspAI | GTTAAC | 1 cut(s) | 1450 |
| LguI | GCTCTTC | 1 cut(s) | 111 |
| LmnI | GCTCC | 3 cut(s) | 340, 466, 1033 |
| Lsp1109I | GCAGC | 8 cut(s) | 9, 169, 235, 799, 919, 961, 1247, 1277 |
| LweI | GCATC | 4 cut(s) | 364, 824, 1247, 1362 |
| MabI | ACCWGGT | 2 cut(s) | 484, 604 |
| MaeI | CTAG | 5 cut(s) | 38, 300, 542, 1328, 1467 |
| MaeII | ACGT | 2 cut(s) | 140, 216 |
| MaeIII | GTNAC | 2 cut(s) | 402, 706 |
| MbiI | CCGCTC | 1 cut(s) | 928 |
| MhlI | GDGCHC | 3 cut(s) | 214, 307, 1345 |
| MlsI | TGGCCA | 1 cut(s) | 194 |
| MluCI | AATT | 5 cut(s) | 315, 407, 877, 936, 1456 |
| MluNI | TGGCCA | 1 cut(s) | 194 |
| MlyI | GAGTC | 4 cut(s) | 120, 356, 1121, 1266 |
| MmeI | TCCRAC | 4 cut(s) | 143, 470, 735, 1126 |
| MnlI | CCTC | 8 cut(s) | 85, 606, 625, 833, 925, 1146, 1194, 1335 |
| Mox20I | TGGCCA | 1 cut(s) | 194 |
| MroI | TCCGGA | 1 cut(s) | 881 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1383 |
| MscI | TGGCCA | 1 cut(s) | 194 |
| MseI | TTAA | 5 cut(s) | 137, 410, 455, 467, 1449 |
| MslI | CAYNNNNRTG | 2 cut(s) | 748, 1167 |
| Msp20I | TGGCCA | 1 cut(s) | 194 |
| MspA1I | CMGCKG | 2 cut(s) | 248, 974 |
| MspI | CCGG | 4 cut(s) | 42, 123, 649, 882 |
| MspR9I | CCNGG | 6 cut(s) | 78, 287, 486, 606, 650, 1154 |
| Mva1269I | GAATGC | 3 cut(s) | 788, 1030, 1237 |
| MvaI | CCWGG | 5 cut(s) | 78, 287, 486, 606, 1154 |
| MvnI | CGCG | 1 cut(s) | 899 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 191, 230, 332, 444, 1244 |
| NciI | CCSGG | 1 cut(s) | 650 |
| NcoI | CCATGG | 2 cut(s) | 153, 982 |
| NlaIII | CATG | 5 cut(s) | 157, 193, 986, 1166, 1448 |
| NlaIV | GGNNCC | 1 cut(s) | 336 |
| NmuCI | GTSAC | 1 cut(s) | 706 |
| NspI | RCATGY | 1 cut(s) | 1166 |
| NspV | TTCGAA | 1 cut(s) | 596 |
| OliI | CACNNNNGTG | 1 cut(s) | 748 |
| PciI | ACATGT | 1 cut(s) | 1162 |
| PciSI | GCTCTTC | 1 cut(s) | 111 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1059 |
| PctI | GAATGC | 3 cut(s) | 788, 1030, 1237 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1383 |
| PfeI | GAWTC | 7 cut(s) | 34, 65, 598, 673, 888, 1149, 1364 |
| PfoI | TCCNGGA | 1 cut(s) | 648 |
| PleI | GAGTC | 4 cut(s) | 120, 356, 1120, 1266 |
| PpsI | GAGTC | 4 cut(s) | 120, 356, 1120, 1266 |
| PscI | ACATGT | 1 cut(s) | 1162 |
| PshAI | GACNNNNGTC | 1 cut(s) | 130 |
| Psp124BI | GAGCTC | 2 cut(s) | 214, 307 |
| Psp1406I | AACGTT | 1 cut(s) | 140 |
| Psp6I | CCWGG | 5 cut(s) | 76, 285, 484, 604, 1152 |
| PspGI | CCWGG | 5 cut(s) | 76, 285, 484, 604, 1152 |
| PspN4I | GGNNCC | 1 cut(s) | 336 |
| PspPI | GGNCC | 2 cut(s) | 243, 646 |
| PvuII | CAGCTG | 1 cut(s) | 974 |
| RsaI | GTAC | 2 cut(s) | 388, 628 |
| RsaNI | GTAC | 2 cut(s) | 387, 627 |
| RseI | CAYNNNNRTG | 2 cut(s) | 748, 1167 |
| SacI | GAGCTC | 2 cut(s) | 214, 307 |
| SapI | GCTCTTC | 1 cut(s) | 111 |
| SaqAI | TTAA | 5 cut(s) | 137, 410, 455, 467, 1449 |
| Sau96I | GGNCC | 2 cut(s) | 243, 646 |
| SchI | GAGTC | 4 cut(s) | 120, 356, 1121, 1266 |
| ScrFI | CCNGG | 6 cut(s) | 78, 287, 486, 606, 650, 1154 |
| SduI | GDGCHC | 3 cut(s) | 214, 307, 1345 |
| SexAI | ACCWGGT | 2 cut(s) | 484, 604 |
| SfaNI | GCATC | 4 cut(s) | 364, 824, 1247, 1362 |
| SfcI | CTRYAG | 3 cut(s) | 969, 1140, 1266 |
| SfuI | TTCGAA | 1 cut(s) | 596 |
| SinI | GGWCC | 2 cut(s) | 243, 646 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 748, 1167 |
| Sse9I | AATT | 5 cut(s) | 315, 407, 877, 936, 1456 |
| SsiI | CCGC | 6 cut(s) | 8, 165, 246, 438, 926, 1283 |
| SspI | AATATT | 1 cut(s) | 421 |
| SspMI | CTAG | 5 cut(s) | 38, 300, 542, 1328, 1467 |
| SstI | GAGCTC | 2 cut(s) | 214, 307 |
| StyD4I | CCNGG | 6 cut(s) | 76, 285, 484, 604, 648, 1152 |
| StyI | CCWWGG | 3 cut(s) | 153, 722, 982 |
| TaaI | ACNGT | 3 cut(s) | 383, 664, 1316 |
| TaiI | ACGT | 2 cut(s) | 143, 219 |
| TaqI | TCGA | 5 cut(s) | 428, 596, 611, 1199, 1402 |
| TaqII | GACCGA | 1 cut(s) | 666 |
| TasI | AATT | 5 cut(s) | 315, 407, 877, 936, 1456 |
| TatI | WGTACW | 1 cut(s) | 626 |
| TauI | GCSGC | 2 cut(s) | 167, 1286 |
| TfiI | GAWTC | 7 cut(s) | 34, 65, 598, 673, 888, 1149, 1364 |
| Tru1I | TTAA | 5 cut(s) | 137, 410, 455, 467, 1449 |
| Tru9I | TTAA | 5 cut(s) | 137, 410, 455, 467, 1449 |
| TscAI | CASTG | 3 cut(s) | 300, 529, 1101 |
| TseFI | GTSAC | 1 cut(s) | 706 |
| TseI | GCWGC | 8 cut(s) | 22, 182, 248, 812, 932, 974, 1235, 1290 |
| Tsp45I | GTSAC | 1 cut(s) | 706 |
| TspDTI | ATGAA | 4 cut(s) | 17, 78, 98, 1285 |
| TspRI | CASTG | 3 cut(s) | 300, 529, 1101 |
| VpaK11BI | GGWCC | 2 cut(s) | 243, 646 |
| XbaI | TCTAGA | 2 cut(s) | 299, 1327 |
| XceI | RCATGY | 1 cut(s) | 1166 |
| XmiI | GTMKAC | 3 cut(s) | 84, 863, 1089 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1383 |
| XspI | CTAG | 5 cut(s) | 38, 300, 542, 1328, 1467 |