Rorug07G0327600
ERF Family

Major Facilitator Superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013955
Physical Location & Seq
Forward (+)
35846222 .. 35846812
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0327600.1

Sequence Viewer

Length: 249 bp
ATGGCAGGTGATTCCCCTACAAAGATTATGACTTGGAGCCGTATCCAAGTGGCAGGAGGGAGTACCGCCAAGGAGATTCTAGAAAAGACTGAGAGGTCAGGCTTCACATCAAATGTCGCATATCAGAAGCTTCTGGCTGAAGCATTGAACATGAACCGTACTAGGATCTTCTCTTATAAGAAGCCACAGATCCCCCCGAAACAAATTTCCTCACCTCCTTCAGCCAATAAAGAAGCCCCGACACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0002165 GO:0003006 GO:0003376 GO:0003674 GO:0005215 GO:0005319 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0006897 GO:0006915 GO:0006928 GO:0006950 GO:0006996 GO:0007033 GO:0007034 GO:0007040 GO:0007041 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007399 GO:0007416 GO:0007417 GO:0007528 GO:0007610 GO:0007617 GO:0007618 GO:0007619 GO:0008150 GO:0008219 GO:0008333 GO:0008347 GO:0008582 GO:0009267 GO:0009605 GO:0009653 GO:0009791 GO:0009886 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010001 GO:0010008 GO:0010623 GO:0010646 GO:0010648 GO:0010876 GO:0010941 GO:0012501 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016477 GO:0019098 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031090 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031902 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033554 GO:0035193 GO:0036465 GO:0040007 GO:0040008 GO:0040011 GO:0042063 GO:0042594 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045476 GO:0045477 GO:0045595 GO:0045924 GO:0046624 GO:0046907 GO:0048468 GO:0048477 GO:0048488 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048609 GO:0048638 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0050808 GO:0050896 GO:0051124 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051641 GO:0051649 GO:0051674 GO:0051704 GO:0051716 GO:0051960 GO:0051963 GO:0060180 GO:0060284 GO:0065007 GO:0065008 GO:0071496 GO:0071702 GO:0071840 GO:0080171 GO:0090092 GO:0090097 GO:0090099 GO:0090101 GO:0090520 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098852 GO:0099003 GO:0099504 GO:1902742 GO:1904396 GO:1904748 GO:1905879 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 Sugar_tr

Protein Analysis

82

Amino Acids

9.03

Weight (kDa)

9.99

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013955)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78130
fragaria_vesca FvH4_5g37680
malus_domestica MD08G1181400.v1.1
prunus_persica Prupe.1G514700_v2.0.a1 Prupe.1G514700_v2.0.a1
pyrus_communis pycom15g32900
rosa_chinensis RchiOBHm_Chr7g0239341
rosa_laevigata RLG00000000761
rosa_multiflora Rmu_sc0008456.1_g000005
rosa_roxburghii Rroxscaffold_3G00220990
rosa_rugosa Rorug07G0327600 Rorug07G0327700
rosa_samantha Rh7AG480900 Rh7BG453500 Rh7CG498800 Rh7DG466900
rosa_wichuraiana Rw7G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AasI GACNNNNNNGTC 1 cut(s) 94
AciI CCGC 1 cut(s) 66
AclWI GGATC 2 cut(s) 173, 184
AcsI RAATTY 1 cut(s) 204
AcuI CTGAAG 2 cut(s) 159, 204
AfaI GTAC 2 cut(s) 64, 160
AgsI TTSAA 1 cut(s) 148
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
AlwI GGATC 2 cut(s) 173, 184
ApoI RAATTY 1 cut(s) 204
AsuHPI GGTGA 2 cut(s) 20, 204
BceAI ACGGC 1 cut(s) 24
BciVI GTATCC 1 cut(s) 53
BfaI CTAG 2 cut(s) 80, 162
BfuI GTATCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 81
Bsp143I GATC 2 cut(s) 165, 189
BspACI CCGC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 38
BspPI GGATC 2 cut(s) 173, 184
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 2 cut(s) 165, 189
BssT1I CCWWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 90
BstKTI GATC 2 cut(s) 168, 192
BstMBI GATC 2 cut(s) 165, 189
BstX2I RGATCY 2 cut(s) 165, 189
BstYI RGATCY 2 cut(s) 165, 189
BsuI GTATCC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 63, 159
CviAII CATG 1 cut(s) 151
CviJI RGCY 7 cut(s) 39, 102, 130, 137, 184, 224, 236
CviKI_1 RGCY 7 cut(s) 39, 102, 130, 137, 184, 224, 236
CviQI GTAC 2 cut(s) 63, 159
DdeI CTNAG 1 cut(s) 90
DpnI GATC 2 cut(s) 167, 191
DpnII GATC 2 cut(s) 165, 189
DrdI GACNNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 69
Eco57I CTGAAG 2 cut(s) 159, 204
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 1 cut(s) 154
FaiI YATR 4 cut(s) 29, 121, 152, 177
FatI CATG 1 cut(s) 150
FspBI CTAG 2 cut(s) 80, 162
Hin1II CATG 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 2 cut(s) 11, 76
HphI GGTGA 2 cut(s) 20, 204
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 228
HpyCH4III ACNGT 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 1 cut(s) 154
Kzo9I GATC 2 cut(s) 165, 189
LmnI GCTCC 1 cut(s) 36
LpnPI CCDG 3 cut(s) 39, 84, 119
MaeI CTAG 2 cut(s) 80, 162
MalI GATC 2 cut(s) 167, 191
MboI GATC 2 cut(s) 165, 189
MboII GAAGA 1 cut(s) 160
MflI RGATCY 2 cut(s) 165, 189
MluCI AATT 1 cut(s) 204
MnlI CCTC 4 cut(s) 50, 87, 220, 225
NdeII GATC 2 cut(s) 165, 189
NlaIII CATG 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 38
PfeI GAWTC 2 cut(s) 11, 76
PsiI TTATAA 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 38
PsuI RGATCY 2 cut(s) 165, 189
RsaI GTAC 2 cut(s) 64, 160
RsaNI GTAC 2 cut(s) 63, 159
Sau3AI GATC 2 cut(s) 165, 189
SetI ASST 4 cut(s) 10, 98, 132, 217
Sse9I AATT 1 cut(s) 204
SsiI CCGC 1 cut(s) 66
SspMI CTAG 2 cut(s) 80, 162
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 158
TasI AATT 1 cut(s) 204
TfiI GAWTC 2 cut(s) 11, 76
TspDTI ATGAA 1 cut(s) 167
XapI RAATTY 1 cut(s) 204
XbaI TCTAGA 1 cut(s) 79
XspI CTAG 2 cut(s) 80, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.