Rorug07G0327700
ERF Family

Major Facilitator Superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013955
Physical Location & Seq
Forward (+)
35847906 .. 35849551
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0327700.1

Sequence Viewer

Length: 615 bp
ATGGAAGTAAAAGCCAGAGCACCTGGAAAGATCATACTGTTTGGTGAACATGTTGTGGTTCATGGATCTACTGCCGTCGCTGCCTCTATTGACCTGTGTACCTATGCCACTCTTTGCTTTCCCACTCATTCTGATAATAATGGTTTACTTAGACTGGAGCTCAAGGATATTGGATTAGAGTTTCTGTGGCCAGTTGGTAGTATTAAGGAAGCACTATCCGGAATAGATAGATGTTCCCAACCCATCAACACCTACCTCATGTCCAGCGGAGAGGCAAAGATCGGAATAGCTACTGGAGTCTTGGCTTTTCTTTGGCTATATTCATCTATCCAAGGATTTAAGCCTGCAACAGTTATTATCACTTCGGAACTTCCTTTGGGTTCAGGTCTTGGTTCATCTGCCGCACTTTGTGTTGCATTCTCTGGTGCTCTTCTTGCTTACTCAGATTGTGCGAGTCTGGATTTCAGCCACCAAGGGTGGTTAGATTTTGGCAGAAGCGAACTTGACTTGCTGAATAAATGGGCATTTGAAGGTGAAAAAATCATCCATGGAAAGCCATCTGGAATTGACAACACAGCACATATGGTAATAGTTTGCCATAGTATGTTAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0002165 GO:0003006 GO:0003376 GO:0003674 GO:0005215 GO:0005319 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0006897 GO:0006915 GO:0006928 GO:0006950 GO:0006996 GO:0007033 GO:0007034 GO:0007040 GO:0007041 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007399 GO:0007416 GO:0007417 GO:0007528 GO:0007610 GO:0007617 GO:0007618 GO:0007619 GO:0008150 GO:0008219 GO:0008333 GO:0008347 GO:0008582 GO:0009267 GO:0009605 GO:0009653 GO:0009791 GO:0009886 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010001 GO:0010008 GO:0010623 GO:0010646 GO:0010648 GO:0010876 GO:0010941 GO:0012501 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016477 GO:0019098 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031090 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031902 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033554 GO:0035193 GO:0036465 GO:0040007 GO:0040008 GO:0040011 GO:0042063 GO:0042594 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045476 GO:0045477 GO:0045595 GO:0045924 GO:0046624 GO:0046907 GO:0048468 GO:0048477 GO:0048488 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048609 GO:0048638 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0050808 GO:0050896 GO:0051124 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051641 GO:0051649 GO:0051674 GO:0051704 GO:0051716 GO:0051960 GO:0051963 GO:0060180 GO:0060284 GO:0065007 GO:0065008 GO:0071496 GO:0071702 GO:0071840 GO:0080171 GO:0090092 GO:0090097 GO:0090099 GO:0090101 GO:0090520 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098852 GO:0099003 GO:0099504 GO:1902742 GO:1904396 GO:1904748 GO:1905879 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 Sugar_tr

Protein Analysis

204

Amino Acids

21.71

Weight (kDa)

5.57

Isoelectric Point (pI)

24.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GHMP_kinases_N PF00288 111 - 193 3.1e-10 GHMP kinases N terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013955)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78130
fragaria_vesca FvH4_5g37680
malus_domestica MD08G1181400.v1.1
prunus_persica Prupe.1G514700_v2.0.a1 Prupe.1G514700_v2.0.a1
pyrus_communis pycom15g32900
rosa_chinensis RchiOBHm_Chr7g0239341
rosa_laevigata RLG00000000761
rosa_multiflora Rmu_sc0008456.1_g000005
rosa_roxburghii Rroxscaffold_3G00220990
rosa_rugosa Rorug07G0327600 Rorug07G0327700
rosa_samantha Rh7AG480900 Rh7BG453500 Rh7CG498800 Rh7DG466900
rosa_wichuraiana Rw7G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 218
AciI CCGC 2 cut(s) 267, 402
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 188
AdeI CACNNNGTG 1 cut(s) 410
AfaI GTAC 1 cut(s) 100
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 1 cut(s) 530
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 2 cut(s) 160, 290
AluI AGCT 2 cut(s) 160, 290
Alw21I GWGCWC 3 cut(s) 22, 162, 430
AlwI GGATC 1 cut(s) 73
Aor13HI TCCGGA 1 cut(s) 218
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 56, 545
BaeI ACNNNNGTAYC 2 cut(s) 82, 115
BalI TGGCCA 1 cut(s) 190
BanII GRGCYC 1 cut(s) 162
Bbv12I GWGCWC 3 cut(s) 22, 162, 430
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 251, 565
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 24
BisI GCNGC 2 cut(s) 81, 402
BlsI GCNGC 2 cut(s) 82, 403
Bme1390I CCNGG 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 24
BpmI CTGGAG 2 cut(s) 176, 315
BpuEI CTTGAG 1 cut(s) 146
BsaJI CCNNGG 3 cut(s) 331, 472, 547
BsaWI WCCGGW 1 cut(s) 218
Bse1I ACTGG 3 cut(s) 159, 191, 298
BseAI TCCGGA 1 cut(s) 218
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 331, 472, 547
BseGI GGATG 1 cut(s) 543
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 3 cut(s) 159, 191, 298
BseXI GCAGC 1 cut(s) 67
BshFI GGCC 1 cut(s) 190
BsiHKAI GWGCWC 3 cut(s) 22, 162, 430
BsiSI CCGG 1 cut(s) 219
BsmI GAATGC 1 cut(s) 416
BsnI GGCC 1 cut(s) 190
Bsp1286I GDGCHC 3 cut(s) 22, 162, 430
Bsp13I TCCGGA 1 cut(s) 218
Bsp143I GATC 3 cut(s) 30, 65, 279
Bsp19I CCATGG 1 cut(s) 547
BspACI CCGC 2 cut(s) 267, 402
BspANI GGCC 1 cut(s) 190
BspCNI CTCAG 1 cut(s) 455
BspEI TCCGGA 1 cut(s) 218
BspPI GGATC 1 cut(s) 73
BspQI GCTCTTC 1 cut(s) 435
BsrI ACTGG 3 cut(s) 159, 191, 298
BssECI CCNNGG 3 cut(s) 331, 472, 547
BssMI GATC 3 cut(s) 30, 65, 279
BssT1I CCWWGG 3 cut(s) 331, 472, 547
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 39, 352
Bst6I CTCTTC 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 2 cut(s) 149, 442
BstDSI CCRYGG 1 cut(s) 547
BstF5I GGATG 1 cut(s) 543
BstKTI GATC 3 cut(s) 33, 68, 282
BstMBI GATC 3 cut(s) 30, 65, 279
BstMWI GCNNNNNNNGC 2 cut(s) 80, 434
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BsuRI GGCC 1 cut(s) 190
BtgI CCRYGG 1 cut(s) 547
BtsCI GGATG 1 cut(s) 543
Cac8I GCNNGC 1 cut(s) 345
Csp6I GTAC 1 cut(s) 99
CviAII CATG 4 cut(s) 50, 62, 259, 548
CviJI RGCY 9 cut(s) 14, 160, 190, 290, 305, 316, 343, 468, 556
CviKI_1 RGCY 9 cut(s) 14, 160, 190, 290, 305, 316, 343, 468, 556
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 2 cut(s) 149, 442
DpnI GATC 3 cut(s) 32, 67, 281
DpnII GATC 3 cut(s) 30, 65, 279
DraIII CACNNNGTG 1 cut(s) 410
EaeI YGGCCR 1 cut(s) 188
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Ecl136II GAGCTC 1 cut(s) 160
Eco130I CCWWGG 3 cut(s) 331, 472, 547
Eco24I GRGCYC 1 cut(s) 162
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 3 cut(s) 331, 472, 547
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 3 cut(s) 331, 472, 547
FaeI CATG 4 cut(s) 53, 65, 262, 551
FatI CATG 4 cut(s) 49, 61, 258, 547
FauNDI CATATG 1 cut(s) 582
Fnu4HI GCNGC 2 cut(s) 81, 402
FokI GGATG 1 cut(s) 530
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 81, 402
GluI GCNGC 2 cut(s) 81, 402
GsuI CTGGAG 2 cut(s) 176, 315
HaeIII GGCC 1 cut(s) 190
HapII CCGG 1 cut(s) 219
Hin1II CATG 4 cut(s) 53, 65, 262, 551
HinfI GANTC 2 cut(s) 297, 454
HpaII CCGG 1 cut(s) 219
HphI GGTGA 2 cut(s) 56, 545
Hpy166II GTNNAC 3 cut(s) 47, 99, 146
Hpy188I TCNGA 4 cut(s) 133, 284, 367, 445
Hpy188III TCNNGA 3 cut(s) 219, 458, 561
Hpy8I GTNNAC 3 cut(s) 47, 99, 146
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 524
HpyCH4III ACNGT 2 cut(s) 39, 352
HpyCH4V TGCA 2 cut(s) 347, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 434
HpyF3I CTNAG 2 cut(s) 149, 442
Hsp92II CATG 4 cut(s) 53, 65, 262, 551
Kpn2I TCCGGA 1 cut(s) 218
Kzo9I GATC 3 cut(s) 30, 65, 279
LguI GCTCTTC 1 cut(s) 435
LmnI GCTCC 1 cut(s) 157
Lsp1109I GCAGC 1 cut(s) 67
MalI GATC 3 cut(s) 32, 67, 281
MboI GATC 3 cut(s) 30, 65, 279
MboII GAAGA 1 cut(s) 422
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 3 cut(s) 22, 162, 430
MlsI TGGCCA 1 cut(s) 190
MluCI AATT 1 cut(s) 564
MluNI TGGCCA 1 cut(s) 190
MlyI GAGTC 2 cut(s) 306, 463
MnlI CCTC 3 cut(s) 94, 265, 266
Mox20I TGGCCA 1 cut(s) 190
MroI TCCGGA 1 cut(s) 218
MscI TGGCCA 1 cut(s) 190
MseI TTAA 2 cut(s) 204, 339
Msp20I TGGCCA 1 cut(s) 190
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 416
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 80, 434
NcoI CCATGG 1 cut(s) 547
NdeI CATATG 1 cut(s) 582
NdeII GATC 3 cut(s) 30, 65, 279
NlaIII CATG 4 cut(s) 53, 65, 262, 551
NspI RCATGY 1 cut(s) 53
PciI ACATGT 1 cut(s) 49
PciSI GCTCTTC 1 cut(s) 435
PctI GAATGC 1 cut(s) 416
PkrI GCNGC 2 cut(s) 82, 403
PleI GAGTC 2 cut(s) 305, 462
PpsI GAGTC 2 cut(s) 305, 462
PscI ACATGT 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PsuI RGATCY 1 cut(s) 65
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SacI GAGCTC 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 435
SaqAI TTAA 2 cut(s) 204, 339
SatI GCNGC 2 cut(s) 81, 402
Sau3AI GATC 3 cut(s) 30, 65, 279
SchI GAGTC 2 cut(s) 306, 463
ScrFI CCNGG 1 cut(s) 24
SduI GDGCHC 3 cut(s) 22, 162, 430
SetI ASST 9 cut(s) 25, 96, 104, 162, 254, 258, 292, 388, 535
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 1 cut(s) 564
SsiI CCGC 2 cut(s) 267, 402
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 22
StyI CCWWGG 3 cut(s) 331, 472, 547
TaaI ACNGT 2 cut(s) 39, 352
TasI AATT 1 cut(s) 564
TauI GCSGC 1 cut(s) 404
Tru1I TTAA 2 cut(s) 204, 339
Tru9I TTAA 2 cut(s) 204, 339
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 3 cut(s) 50, 312, 384
XceI RCATGY 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.