Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012870

Physical Location & Seq

Genomic Coordinates Reverse (-)

29511561 .. 29513100

Gene Structure 1540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCGGTATTGTCTAAACCGGTAGCAATACCAAAATCCGGGTTCTCTCTAATCCCGGTTATAGATATGTCTGACCCAGAATCCAAACATGCCCTCGTGAAAGCATGCGAAGACTTCGGCTTCTTCAAGGTGATCAACCATGGCGTTTCCGCAGAGCTAGTCTCTGTTTTAGAACACGAGACCGTCGATTTCTTCTCGTTGCCCAAGTCAGAGAAAACCCAAGTCGCAGGTTATCCCTTCGGATACGGGAACAGTAAGATTGGTCGGAATGGTGACGTGGGTTGGGTTGAGTACTTGTTGATGAACGCTAATCATGATTCCGGTTCGGGTCCACTATTTCCAAGTCTTCTCAAAAGCCCGGGAACTTTCAGAAACGCATTGGAAGAGTACACAACATCAGTGAGAAAAATGACATTCGATGTTTTGGAGAAGATCACAGATGGGCTAGGGATCAAACCGAGGAACACACTTAGCAAGCTTGTGTCTGACCAAAACACGGACTCGATATTGAGACTTAATCACTATCCACCATGTCCTCTTAGCAATAAGAAAACCAATGGTGGTAAGAATGTGATTGGTTTTGGTGAACACACAGATCCTCAAATCATCTCTGTCTTAAGATCTAACAACACTTCTGGTCTCCAAATTAATCTAAATGATGGCTCATGGATCTCTGTCCCTCCCGATCACACTTCCTTCTTCTTCAACGTTGGTGACTCTCTCCAGGTGATGACAAATGGGAGGTTCAAGAGCGTGAGGCATAGGGTTTTAGCTAACTGTAAAAAATCTAGGGTTTCTATGATTTACTTCGCTGGACCTTCATTGACTCAGAGAATCGCTCCGTTGACATGTTTGATAGACAATGAGGACGAGAGGTTGTACGAGGAGTTTACTTGGTCTGAATACAAAAACTCTACCTACAACTCTAGATTGTCTGATAATAGGCTTCAACAATTCGAAAGGAAGACTATAAAAAATCTCCTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009987 GO:0010114 GO:0010817 GO:0016042 GO:0016053 GO:0016054 GO:0016101 GO:0016102 GO:0016103 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0045487 GO:0045543 GO:0046394 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

329

Amino Acids

36.73

Weight (kDa)

8.53

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	18 - 104	1.6e-15	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	167 - 273	1.5e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78440
fragaria_vesca	FvH4_3g16760 FvH4_3g16760
malus_domestica	MD05G1207000.v1.1 MD10G1194100.v1.1
prunus_persica	Prupe.4G150200_v2.0.a1
pyrus_communis	pycom05g19330 pycom10g16790
rosa_chinensis	RchiOBHm_Chr5g0027981
rosa_laevigata	RLG00000033053
rosa_multiflora	Rmu_sc0000309.1_g000005
rosa_roxburghii	Rroxscaffold_1G00051690
rosa_rugosa	Rorug05G0102600
rosa_samantha	Rh5AG196900 Rh5BG194900 Rh5CG215200 Rh5DG196700
rosa_wichuraiana	Rw5G017920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	218
AciI	CCGC	2 cut(s)	5, 150
AclI	AACGTT	1 cut(s)	708
AclWI	GGATC	3 cut(s)	458, 590, 677
AfaI	GTAC	3 cut(s)	293, 389, 881
AfiI	CCNNNNNNNGG	2 cut(s)	38, 496
AflII	CTTAAG	1 cut(s)	616
AflIII	ACRYGT	1 cut(s)	848
AgeI	ACCGGT	1 cut(s)	19
AgsI	TTSAA	4 cut(s)	127, 706, 748, 950
AjiI	CACGTC	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	723
AluBI	AGCT	3 cut(s)	157, 478, 773
AluI	AGCT	3 cut(s)	157, 478, 773
Alw26I	GTCTC	4 cut(s)	166, 173, 505, 644
AlwI	GGATC	3 cut(s)	458, 590, 677
Ama87I	CYCGRG	1 cut(s)	358
AseI	ATTAAT	1 cut(s)	648
AsiGI	ACCGGT	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	329, 815
AsuC2I	CCSGG	4 cut(s)	40, 56, 359, 360
AsuHPI	GGTGA	5 cut(s)	142, 284, 596, 725, 739
AsuII	TTCGAA	1 cut(s)	957
AvaI	CYCGRG	1 cut(s)	358
AvaII	GGWCC	2 cut(s)	329, 815
BauI	CACGAG	2 cut(s)	95, 176
BbsI	GAAGAC	3 cut(s)	117, 338, 971
BccI	CCATC	2 cut(s)	434, 653
BciT130I	CCWGG	1 cut(s)	725
BciVI	GTATCC	1 cut(s)	236
BclI	TGATCA	1 cut(s)	132
BcnI	CCSGG	4 cut(s)	40, 56, 359, 360
BcoDI	GTCTC	4 cut(s)	166, 173, 505, 644
BfaI	CTAG	4 cut(s)	158, 446, 789, 927
BfrI	CTTAAG	1 cut(s)	616
BfuAI	ACCTGC	1 cut(s)	218
BfuI	GTATCC	1 cut(s)	236
BglII	AGATCT	1 cut(s)	620
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	5 cut(s)	40, 56, 359, 360, 725
Bme18I	GGWCC	2 cut(s)	329, 815
BmeT110I	CYCGRG	1 cut(s)	358
BmgBI	CACGTC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	329, 815
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	5 cut(s)	40, 56, 359, 360, 725
BpiI	GAAGAC	3 cut(s)	117, 338, 971
BplI	GAGNNNNNCTC	4 cut(s)	146, 178, 823, 855
BpmI	CTGGAG	1 cut(s)	707
Bpu14I	TTCGAA	1 cut(s)	957
BpuMI	CCSGG	4 cut(s)	40, 56, 359, 360
BsaI	GGTCTC	2 cut(s)	173, 644
BsaJI	CCNNGG	3 cut(s)	139, 358, 458
BsaWI	WCCGGW	2 cut(s)	19, 320
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 496
Bse118I	RCCGGY	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	725
BseDI	CCNNGG	3 cut(s)	139, 358, 458
BseLI	CCNNNNNNNGG	2 cut(s)	38, 496
BseMII	CTCAG	1 cut(s)	842
BseRI	GAGGAG	1 cut(s)	899
BshTI	ACCGGT	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	358
BsiSI	CCGG	5 cut(s)	20, 39, 56, 321, 359
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	2 cut(s)	38, 496
BsmAI	GTCTC	4 cut(s)	166, 173, 505, 644
BsmFI	GGGAC	1 cut(s)	662
Bso31I	GGTCTC	2 cut(s)	173, 644
BsoBI	CYCGRG	1 cut(s)	358
Bsp119I	TTCGAA	1 cut(s)	957
Bsp143I	GATC	7 cut(s)	132, 432, 450, 595, 620, 669, 685
Bsp19I	CCATGG	1 cut(s)	139
BspACI	CCGC	2 cut(s)	5, 150
BspCNI	CTCAG	1 cut(s)	841
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	330
BspMI	ACCTGC	1 cut(s)	218
BspPI	GGATC	3 cut(s)	458, 590, 677
BspT104I	TTCGAA	1 cut(s)	957
BspTI	CTTAAG	1 cut(s)	616
BspTNI	GGTCTC	2 cut(s)	173, 644
BsrFI	RCCGGY	1 cut(s)	19
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	3 cut(s)	139, 358, 458
BssMI	GATC	7 cut(s)	132, 432, 450, 595, 620, 669, 685
BssSI	CACGAG	2 cut(s)	95, 176
BssT1I	CCWWGG	1 cut(s)	139
Bst2BI	CACGAG	2 cut(s)	95, 176
Bst2UI	CCWGG	1 cut(s)	725
Bst4CI	ACNGT	3 cut(s)	184, 254, 779
Bst6I	CTCTTC	1 cut(s)	378
BstAFI	CTTAAG	1 cut(s)	616
BstBI	TTCGAA	1 cut(s)	957
BstC8I	GCNNGC	2 cut(s)	106, 476
BstDEI	CTNAG	3 cut(s)	470, 539, 828
BstDSI	CCRYGG	1 cut(s)	139
BstKTI	GATC	7 cut(s)	135, 435, 453, 598, 623, 672, 688
BstMAI	GTCTC	4 cut(s)	166, 173, 505, 644
BstMBI	GATC	7 cut(s)	132, 432, 450, 595, 620, 669, 685
BstNI	CCWGG	1 cut(s)	725
BstNSI	RCATGY	3 cut(s)	92, 108, 852
BstSCI	CCNGG	5 cut(s)	38, 54, 357, 358, 723
BstV2I	GAAGAC	3 cut(s)	117, 338, 971
BstX2I	RGATCY	3 cut(s)	595, 620, 669
BstYI	RGATCY	3 cut(s)	595, 620, 669
BsuI	GTATCC	1 cut(s)	236
BtgI	CCRYGG	1 cut(s)	139
BtrI	CACGTC	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	405
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	2 cut(s)	106, 476
CciI	TCATGA	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	329, 815
Cfr9I	CCCGGG	1 cut(s)	358
Csp6I	GTAC	3 cut(s)	292, 388, 880
CspAI	ACCGGT	1 cut(s)	19
CviAII	CATG	7 cut(s)	89, 105, 140, 314, 531, 666, 849
CviJI	RGCY	8 cut(s)	120, 157, 357, 445, 478, 663, 773, 946
CviKI_1	RGCY	8 cut(s)	120, 157, 357, 445, 478, 663, 773, 946
CviQI	GTAC	3 cut(s)	292, 388, 880
DdeI	CTNAG	3 cut(s)	470, 539, 828
DpnI	GATC	7 cut(s)	134, 434, 452, 597, 622, 671, 687
DpnII	GATC	7 cut(s)	132, 432, 450, 595, 620, 669, 685
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	139
Eco31I	GGTCTC	2 cut(s)	173, 644
Eco47I	GGWCC	2 cut(s)	329, 815
Eco88I	CYCGRG	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	723
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	7 cut(s)	92, 108, 143, 317, 534, 669, 852
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	7 cut(s)	88, 104, 139, 313, 530, 665, 848
FbaI	TGATCA	1 cut(s)	132
FspBI	CTAG	4 cut(s)	158, 446, 789, 927
GsuI	CTGGAG	1 cut(s)	707
HapII	CCGG	5 cut(s)	20, 39, 56, 321, 359
Hin1II	CATG	7 cut(s)	92, 108, 143, 317, 534, 669, 852
HincII	GTYRAC	1 cut(s)	846
HindII	GTYRAC	1 cut(s)	846
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	6 cut(s)	80, 317, 500, 716, 826, 834
HpaII	CCGG	5 cut(s)	20, 39, 56, 321, 359
HphI	GGTGA	5 cut(s)	142, 284, 596, 725, 739
Hpy166II	GTNNAC	5 cut(s)	332, 390, 587, 846, 891
Hpy188I	TCNGA	9 cut(s)	73, 211, 242, 267, 371, 487, 831, 901, 937
Hpy188III	TCNNGA	5 cut(s)	97, 314, 683, 748, 927
Hpy8I	GTNNAC	5 cut(s)	332, 390, 587, 846, 891
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	3 cut(s)	247, 706, 828
HpyCH4III	ACNGT	3 cut(s)	184, 254, 779
HpyCH4IV	ACGT	2 cut(s)	276, 708
HpyF3I	CTNAG	3 cut(s)	470, 539, 828
HpySE526I	ACGT	2 cut(s)	276, 708
Hsp92II	CATG	7 cut(s)	92, 108, 143, 317, 534, 669, 852
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	7 cut(s)	132, 432, 450, 595, 620, 669, 685
LmnI	GCTCC	1 cut(s)	844
MaeI	CTAG	4 cut(s)	158, 446, 789, 927
MaeII	ACGT	2 cut(s)	276, 708
MaeIII	GTNAC	2 cut(s)	272, 713
MalI	GATC	7 cut(s)	134, 434, 452, 597, 622, 671, 687
MboI	GATC	7 cut(s)	132, 432, 450, 595, 620, 669, 685
MboII	GAAGA	9 cut(s)	115, 122, 184, 338, 395, 442, 691, 694, 976
MflI	RGATCY	3 cut(s)	595, 620, 669
MluCI	AATT	3 cut(s)	645, 953, 985
MlyI	GAGTC	3 cut(s)	494, 710, 820
MmeI	TCCRAC	1 cut(s)	245
MseI	TTAA	3 cut(s)	516, 617, 648
MspCI	CTTAAG	1 cut(s)	616
MspI	CCGG	5 cut(s)	20, 39, 56, 321, 359
MspR9I	CCNGG	5 cut(s)	40, 56, 359, 360, 725
MvaI	CCWGG	1 cut(s)	725
NciI	CCSGG	4 cut(s)	40, 56, 359, 360
NcoI	CCATGG	1 cut(s)	139
NdeII	GATC	7 cut(s)	132, 432, 450, 595, 620, 669, 685
NlaIII	CATG	7 cut(s)	92, 108, 143, 317, 534, 669, 852
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	2 cut(s)	272, 713
NspI	RCATGY	3 cut(s)	92, 108, 852
NspV	TTCGAA	1 cut(s)	957
PaeI	GCATGC	1 cut(s)	108
PagI	TCATGA	1 cut(s)	313
PciI	ACATGT	1 cut(s)	848
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	3 cut(s)	80, 317, 834
PinAI	ACCGGT	1 cut(s)	19
PleI	GAGTC	3 cut(s)	494, 710, 820
PpsI	GAGTC	3 cut(s)	494, 710, 820
PscI	ACATGT	1 cut(s)	848
PshBI	ATTAAT	1 cut(s)	648
Psp1406I	AACGTT	1 cut(s)	708
Psp6I	CCWGG	1 cut(s)	723
PspGI	CCWGG	1 cut(s)	723
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	2 cut(s)	329, 815
PsuI	RGATCY	3 cut(s)	595, 620, 669
RsaI	GTAC	3 cut(s)	293, 389, 881
RsaNI	GTAC	3 cut(s)	292, 388, 880
SaqAI	TTAA	3 cut(s)	516, 617, 648
Sau3AI	GATC	7 cut(s)	132, 432, 450, 595, 620, 669, 685
Sau96I	GGNCC	2 cut(s)	329, 815
ScaI	AGTACT	1 cut(s)	293
SchI	GAGTC	3 cut(s)	494, 710, 820
ScrFI	CCNGG	5 cut(s)	40, 56, 359, 360, 725
SfuI	TTCGAA	1 cut(s)	957
SinI	GGWCC	2 cut(s)	329, 815
SmaI	CCCGGG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	616
SmoI	CTYRAG	1 cut(s)	616
SphI	GCATGC	1 cut(s)	108
Sse9I	AATT	3 cut(s)	645, 953, 985
SsiI	CCGC	2 cut(s)	5, 150
SspMI	CTAG	4 cut(s)	158, 446, 789, 927
StyD4I	CCNGG	5 cut(s)	38, 54, 357, 358, 723
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	3 cut(s)	184, 254, 779
TaiI	ACGT	2 cut(s)	279, 711
TaqI	TCGA	4 cut(s)	186, 417, 503, 957
TasI	AATT	3 cut(s)	645, 953, 985
TatI	WGTACW	2 cut(s)	291, 387
TfiI	GAWTC	3 cut(s)	80, 317, 834
Tru1I	TTAA	3 cut(s)	516, 617, 648
Tru9I	TTAA	3 cut(s)	516, 617, 648
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	2 cut(s)	272, 713
Tsp45I	GTSAC	2 cut(s)	272, 713
TspDTI	ATGAA	2 cut(s)	317, 810
TspGWI	ACGGA	2 cut(s)	512, 831
TspMI	CCCGGG	1 cut(s)	358
TspRI	CASTG	1 cut(s)	405
Vha464I	CTTAAG	1 cut(s)	616
VpaK11BI	GGWCC	2 cut(s)	329, 815
VspI	ATTAAT	1 cut(s)	648
XbaI	TCTAGA	1 cut(s)	926
XceI	RCATGY	3 cut(s)	92, 108, 852
XmaI	CCCGGG	1 cut(s)	358
XspI	CTAG	4 cut(s)	158, 446, 789, 927
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.