Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012870

Physical Location & Seq

Genomic Coordinates Reverse (-)

8592732 .. 8594638

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G150200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGTGTTTGTGACTAAACCACCTACTGAAAACTTTTCTTATCCTAGAGGCAGCAAAGTCTCCAAATTCTTTGCTGGAATTCCTCTAATAGACCTTTCAAAACCAGACTCCAAACAGCTCATAGTCAGGGCTTGTGAGGAGTTTGGGTTCTTCAAGATCATCAACCATGGTGTTCCAATGGAATTCATTACCAGGTTGGAATCTGAGGCCATCAAATTCTTCTCCTTGCCGCTTTCTGAGAAAGAAAAAGCAGGGCAACCTAATCCTTTTGGATATGGTAACAAGCATATTGGGAAGAATGGTGATGTTGGTTGGGTGGAGTACCTTCTTCTAACAGCCAACATAGAATCCAATTCCCAGAGATTTTTATCAGTTTTTGGACAGAACCCAGAAGAGTTCTGTTCTGCTTTGAATGATTATATATCAGCTGTGAAGAAAATGGCATGTGAGATTCTTGAACTGATGGCTGAAGGATTAAAGATTCAACCAAGGAATGTGTTCAGCAAGCTTTTGATGGATGAACAGAGTGACTCTTACTTCAGGTTAAATCACTACCCACCATGCCCAGAGCTTCAAGATTTGAGTGCCAGAAATGTGATTGGATTTGGAGCGCACACAGACCCACAAATCATCTCTGTGCTGAGATCCAACAACACATCTGGCCTCCAAATTTCATTGAGAGATGGGAATTGGATTCCAGTCCCACCTGATCATAACTCCTTCTTCATCAATGTTGGTGACTCTTTGCAGGTTTTGACCAATGGGAGGTTCCAAAGTGTGAGGCACAGGGTTTTGGCCAATGGTTCAAAATCAAGAGTTTCAATGATTTATTTTGGGGGGCCACCCTTGAGTGAGAAAATAGCTCCACTGCAATCTGTCATGAAGGGAGAGGAGGAAAGCATGTACAAAGAGTTTACATGGTTTGAGTACAAAAGCACTTGTTACAACACAAGACTGGCTGATAATAGGCTTGGAAACTTTGAGAGAATTGCAGCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009987 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

334

Amino Acids

37.55

Weight (kDa)

7.01

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78440
fragaria_vesca	FvH4_3g16760 FvH4_3g16760
malus_domestica	MD05G1207000.v1.1 MD10G1194100.v1.1
prunus_persica	Prupe.4G150200_v2.0.a1
pyrus_communis	pycom05g19330 pycom10g16790
rosa_chinensis	RchiOBHm_Chr5g0027981
rosa_laevigata	RLG00000033053
rosa_multiflora	Rmu_sc0000309.1_g000005
rosa_roxburghii	Rroxscaffold_1G00051690
rosa_rugosa	Rorug05G0102600
rosa_samantha	Rh5AG196900 Rh5BG194900 Rh5CG215200 Rh5DG196700
rosa_wichuraiana	Rw5G017920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	739
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	1 cut(s)	639
AcoI	YGGCCR	1 cut(s)	795
AcsI	RAATTY	5 cut(s)	65, 78, 182, 215, 669
AcuI	CTGAAG	2 cut(s)	489, 523
AfaI	GTAC	3 cut(s)	323, 905, 929
AfiI	CCNNNNNNNGG	1 cut(s)	765
AgsI	TTSAA	8 cut(s)	99, 154, 412, 458, 485, 575, 807, 822
AjnI	CCWGG	1 cut(s)	191
AjuI	GAANNNNNNNTTGG	2 cut(s)	752, 784
AloI	GAACNNNNNNTCC	2 cut(s)	131, 163
AluBI	AGCT	5 cut(s)	118, 428, 508, 571, 863
AluI	AGCT	5 cut(s)	118, 428, 508, 571, 863
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	639
AoxI	GGCC	4 cut(s)	207, 661, 795, 839
ApeKI	GCWGC	2 cut(s)	51, 992
ApoI	RAATTY	5 cut(s)	65, 78, 182, 215, 669
Asp700I	GAANNNNTTC	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	613
AspS9I	GGNCC	1 cut(s)	839
AsuHPI	GGTGA	2 cut(s)	314, 749
BalI	TGGCCA	1 cut(s)	797
BbvI	GCAGC	1 cut(s)	63
BccI	CCATC	4 cut(s)	218, 457, 508, 677
BciT130I	CCWGG	1 cut(s)	193
BclI	TGATCA	1 cut(s)	709
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	45
BfuAI	ACCTGC	1 cut(s)	739
BisI	GCNGC	3 cut(s)	52, 230, 993
BlsI	GCNGC	3 cut(s)	53, 231, 994
Bme1390I	CCNGG	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	839
BmiI	GGNNCC	2 cut(s)	770, 840
BmrFI	CCNGG	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	868
BsaBI	GATNNNNATC	1 cut(s)	367
BsaJI	CCNNGG	2 cut(s)	166, 488
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	765
Bse1I	ACTGG	2 cut(s)	698, 960
Bse8I	GATNNNNATC	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	166, 488
BseGI	GGATG	1 cut(s)	523
BseJI	GATNNNNATC	1 cut(s)	367
BseLI	CCNNNNNNNGG	1 cut(s)	765
BseMII	CTCAG	3 cut(s)	195, 228, 632
BseNI	ACTGG	2 cut(s)	698, 960
BseRI	GAGGAG	2 cut(s)	152, 905
BseXI	GCAGC	1 cut(s)	63
BshFI	GGCC	4 cut(s)	209, 663, 797, 841
BslFI	GGGAC	1 cut(s)	686
BslI	CCNNNNNNNGG	1 cut(s)	765
BsmAI	GTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	686
BsnI	GGCC	4 cut(s)	209, 663, 797, 841
Bsp1407I	TGTACA	1 cut(s)	903
Bsp143I	GATC	3 cut(s)	156, 644, 709
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	4 cut(s)	209, 663, 797, 841
BspCNI	CTCAG	3 cut(s)	196, 229, 633
BspHI	TCATGA	1 cut(s)	879
BspLI	GGNNCC	2 cut(s)	770, 840
BspMI	ACCTGC	1 cut(s)	739
BspPI	GGATC	1 cut(s)	639
BsrGI	TGTACA	1 cut(s)	903
BsrI	ACTGG	2 cut(s)	698, 960
BssECI	CCNNGG	2 cut(s)	166, 488
BssMI	GATC	3 cut(s)	156, 644, 709
BssT1I	CCWWGG	2 cut(s)	166, 488
Bst2UI	CCWGG	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	387
BstAUI	TGTACA	1 cut(s)	903
BstC8I	GCNNGC	1 cut(s)	506
BstDEI	CTNAG	3 cut(s)	204, 237, 641
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	523
BstHHI	GCGC	1 cut(s)	613
BstKTI	GATC	3 cut(s)	159, 647, 712
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	3 cut(s)	156, 644, 709
BstNI	CCWGG	1 cut(s)	193
BstNSI	RCATGY	2 cut(s)	447, 904
BstSCI	CCNGG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	644
BstYI	RGATCY	1 cut(s)	644
BsuRI	GGCC	4 cut(s)	209, 663, 797, 841
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	523
BtsI	GCAGTG	1 cut(s)	866
BtsIMutI	CAGTG	1 cut(s)	866
BveI	ACCTGC	1 cut(s)	739
Cac8I	GCNNGC	1 cut(s)	506
CciI	TCATGA	1 cut(s)	879
CfoI	GCGC	1 cut(s)	613
Cfr13I	GGNCC	1 cut(s)	839
CsiI	ACCWGGT	1 cut(s)	191
Csp6I	GTAC	3 cut(s)	322, 904, 928
CviAII	CATG	6 cut(s)	167, 444, 561, 880, 901, 918
CviQI	GTAC	3 cut(s)	322, 904, 928
DdeI	CTNAG	3 cut(s)	204, 237, 641
DpnI	GATC	3 cut(s)	158, 646, 711
DpnII	GATC	3 cut(s)	156, 644, 709
EaeI	YGGCCR	1 cut(s)	795
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	2 cut(s)	166, 488
Eco57I	CTGAAG	2 cut(s)	489, 523
EcoRI	GAATTC	2 cut(s)	78, 182
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	2 cut(s)	166, 488
ErhI	CCWWGG	2 cut(s)	166, 488
FaeI	CATG	6 cut(s)	170, 447, 564, 883, 904, 921
FaqI	GGGAC	1 cut(s)	686
FatI	CATG	6 cut(s)	166, 443, 560, 879, 900, 917
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	3 cut(s)	52, 230, 993
FokI	GGATG	1 cut(s)	530
Fsp4HI	GCNGC	3 cut(s)	52, 230, 993
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	1 cut(s)	612
GluI	GCNGC	3 cut(s)	52, 230, 993
HaeIII	GGCC	4 cut(s)	209, 663, 797, 841
HhaI	GCGC	1 cut(s)	613
Hin1II	CATG	6 cut(s)	170, 447, 564, 883, 904, 921
Hin6I	GCGC	1 cut(s)	611
HinP1I	GCGC	1 cut(s)	611
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	8 cut(s)	107, 200, 347, 451, 481, 530, 694, 740
HphI	GGTGA	2 cut(s)	314, 749
Hpy166II	GTNNAC	1 cut(s)	915
Hpy188I	TCNGA	2 cut(s)	205, 238
Hpy188III	TCNNGA	5 cut(s)	154, 455, 575, 813, 880
Hpy8I	GTNNAC	1 cut(s)	915
HpyAV	CCTTC	4 cut(s)	335, 464, 730, 877
HpyCH4V	TGCA	3 cut(s)	748, 871, 992
HpyF3I	CTNAG	3 cut(s)	204, 237, 641
Hsp92II	CATG	6 cut(s)	170, 447, 564, 883, 904, 921
HspAI	GCGC	1 cut(s)	611
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	3 cut(s)	156, 644, 709
LmnI	GCTCC	2 cut(s)	608, 868
Lsp1109I	GCAGC	1 cut(s)	63
MabI	ACCWGGT	1 cut(s)	191
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	5 cut(s)	10, 278, 527, 737, 941
MalI	GATC	3 cut(s)	158, 646, 711
MboI	GATC	3 cut(s)	156, 644, 709
MboII	GAAGA	7 cut(s)	142, 211, 307, 320, 404, 445, 715
MflI	RGATCY	1 cut(s)	644
MlsI	TGGCCA	1 cut(s)	797
MluCI	AATT	8 cut(s)	65, 78, 182, 215, 352, 669, 688, 987
MluNI	TGGCCA	1 cut(s)	797
MlyI	GAGTC	3 cut(s)	101, 524, 734
MmeI	TCCRAC	2 cut(s)	177, 672
MnlI	CCTC	9 cut(s)	41, 93, 130, 199, 674, 759, 774, 883, 886
Mox20I	TGGCCA	1 cut(s)	797
MroXI	GAANNNNTTC	1 cut(s)	497
MscI	TGGCCA	1 cut(s)	797
MseI	TTAA	2 cut(s)	476, 545
MslI	CAYNNNNRTG	1 cut(s)	635
Msp20I	TGGCCA	1 cut(s)	797
MspA1I	CMGCKG	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	193
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	3 cut(s)	156, 644, 709
NlaIII	CATG	6 cut(s)	170, 447, 564, 883, 904, 921
NlaIV	GGNNCC	2 cut(s)	770, 840
NmuCI	GTSAC	3 cut(s)	10, 527, 737
NspI	RCATGY	2 cut(s)	447, 904
PagI	TCATGA	1 cut(s)	879
PdmI	GAANNNNTTC	1 cut(s)	497
PfeI	GAWTC	5 cut(s)	200, 347, 451, 481, 694
PkrI	GCNGC	3 cut(s)	53, 231, 994
PleI	GAGTC	3 cut(s)	101, 524, 734
PpsI	GAGTC	3 cut(s)	101, 524, 734
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	2 cut(s)	770, 840
PspPI	GGNCC	1 cut(s)	839
PsuI	RGATCY	1 cut(s)	644
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	3 cut(s)	323, 905, 929
RsaNI	GTAC	3 cut(s)	322, 904, 928
RseI	CAYNNNNRTG	1 cut(s)	635
SaqAI	TTAA	2 cut(s)	476, 545
SatI	GCNGC	3 cut(s)	52, 230, 993
Sau3AI	GATC	3 cut(s)	156, 644, 709
Sau96I	GGNCC	1 cut(s)	839
SchI	GAGTC	3 cut(s)	101, 524, 734
ScrFI	CCNGG	1 cut(s)	193
SexAI	ACCWGGT	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	1 cut(s)	847
SmoI	CTYRAG	1 cut(s)	847
Sse9I	AATT	8 cut(s)	65, 78, 182, 215, 352, 669, 688, 987
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	191
StyI	CCWWGG	2 cut(s)	166, 488
TasI	AATT	8 cut(s)	65, 78, 182, 215, 352, 669, 688, 987
TatI	WGTACW	2 cut(s)	903, 927
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	5 cut(s)	200, 347, 451, 481, 694
Tru1I	TTAA	2 cut(s)	476, 545
Tru9I	TTAA	2 cut(s)	476, 545
TscAI	CASTG	1 cut(s)	873
TseFI	GTSAC	3 cut(s)	10, 527, 737
TseI	GCWGC	2 cut(s)	51, 992
Tsp45I	GTSAC	3 cut(s)	10, 527, 737
TspDTI	ATGAA	5 cut(s)	175, 534, 663, 715, 896
TspRI	CASTG	1 cut(s)	873
XapI	RAATTY	5 cut(s)	65, 78, 182, 215, 669
XceI	RCATGY	2 cut(s)	447, 904
XmnI	GAANNNNTTC	1 cut(s)	497
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.