Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012870

Physical Location & Seq

Genomic Coordinates Forward (+)

29020103 .. 29022348

Gene Structure 2246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1194100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGTGTTTGTGACCAAATCAGCCAGTGAACACTTTTCTTATCCTAGAACCAGCACCAAAGTCTCCAAATTGTTTTCTGGGATTCCTCTGGTAGACCTCACAAAACCAGACTCCAAGCAACTCATTGTCAATGCCTGTGAGGAGTATGGTTTCTTCAAGATCATCAACCATGGTGTTCCAATGGATTTCATCACAAGATTGGAATCTGAGGCCATCAAATTCTTCTCCCTCCCACTTTCTGAGAAGGAAAAGTCAGGGCCTCCTAATCCATTAGGATATGGGAACAAGCATATTGGGAAGAATGGTGATGTTGGTTGGGTCGAGTACCTCCTTCTCACAACCAATACAGAATCCATTTCCCAGAGGTTTCTATCGGTTTTTGGAAATGACGCAGAAGAGTTTTGTTCTGCTTTGAATGATTACGTATCAGCTGTGAAGAAAATGACCTGTGAGATTCTTGAGCTGATGTCTGAAGGATTGAAGATTCAACCAAGGAATGTGTTCAGTAAGCTTTTGATGGATGAACAGAGTGATTCTTGTTTCAGGCTCAATCACTACCCACCATGCCCAGAGCTTCAAGGTTTGAGCAGTGCCGGTGCCAGAAATGTGATTGGATTTGGAGAGCACACAGACCCACAAATCATTTCTGTGCTAAGATCCAACAATACATCTGGCCTCCAAATTTCTTTGAGAGATGGGAGTTGGATTTCAGTCCCACCTGATCAGAACTCCTTCTTTATCAATGTTGGTGACTCTTTACAGGTTTTGACTAATGGGAGGTTTGAAAGTGTGAGGCACAGGGTTTTGGCAAATGGTTTAAAATCAAGACTGTCAATGATTTATTTTGGGGGACCACCCTTGAGTGAGAAAATAGCTCCATTGCAATCTGTCATGAATGGAGAGGAGGAAAGCATGTACAAGGAGTTTACATGGTTTGAGTACAAAAAATCTGCCTACAGCTCAAGACTTGCAGATAACAGGCTTGGACACTTTGAGAGAATTGCAGCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009987 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

338

Amino Acids

37.68

Weight (kDa)

6.2

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	28 - 115	5.1e-16	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	178 - 283	1.1e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78440
fragaria_vesca	FvH4_3g16760 FvH4_3g16760
malus_domestica	MD05G1207000.v1.1 MD10G1194100.v1.1
prunus_persica	Prupe.4G150200_v2.0.a1
pyrus_communis	pycom05g19330 pycom10g16790
rosa_chinensis	RchiOBHm_Chr5g0027981
rosa_laevigata	RLG00000033053
rosa_multiflora	Rmu_sc0000309.1_g000005
rosa_roxburghii	Rroxscaffold_1G00051690
rosa_rugosa	Rorug05G0102600
rosa_samantha	Rh5AG196900 Rh5BG194900 Rh5CG215200 Rh5DG196700
rosa_wichuraiana	Rw5G017920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	596
AccI	GTMKAC	1 cut(s)	93
AclWI	GGATC	1 cut(s)	651
AcsI	RAATTY	2 cut(s)	218, 681
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	3 cut(s)	326, 917, 941
AgsI	TTSAA	6 cut(s)	157, 415, 481, 488, 578, 785
AluBI	AGCT	6 cut(s)	431, 463, 511, 574, 875, 960
AluI	AGCT	6 cut(s)	431, 463, 511, 574, 875, 960
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	1 cut(s)	651
AoxI	GGCC	3 cut(s)	210, 257, 673
ApeKI	GCWGC	1 cut(s)	1004
ApoI	RAATTY	2 cut(s)	218, 681
Asp700I	GAANNNNTTC	2 cut(s)	500, 731
AspS9I	GGNCC	2 cut(s)	257, 851
AsuHPI	GGTGA	2 cut(s)	317, 761
AvaII	GGWCC	1 cut(s)	851
BanI	GGYRCC	1 cut(s)	596
BarI	GAAGNNNNNNTAC	2 cut(s)	137, 169
Bbv12I	GWGCWC	1 cut(s)	627
BccI	CCATC	3 cut(s)	221, 511, 689
BclI	TGATCA	1 cut(s)	721
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	955
BisI	GCNGC	1 cut(s)	1005
BlsI	GCNGC	1 cut(s)	1006
Bme18I	GGWCC	1 cut(s)	851
BmgT120I	GGNCC	2 cut(s)	257, 851
BmiI	GGNNCC	2 cut(s)	598, 852
BpuEI	CTTGAG	3 cut(s)	479, 880, 946
BsaAI	YACGTR	1 cut(s)	424
BsaBI	GATNNNNATC	1 cut(s)	202
BsaJI	CCNNGG	2 cut(s)	169, 491
Bse118I	RCCGGY	1 cut(s)	593
Bse1I	ACTGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	878
Bse8I	GATNNNNATC	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	169, 491
BseGI	GGATG	1 cut(s)	526
BseJI	GATNNNNATC	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	878
BseMII	CTCAG	2 cut(s)	198, 231
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	2 cut(s)	155, 917
BshFI	GGCC	3 cut(s)	212, 259, 675
BshNI	GGYRCC	1 cut(s)	596
BsiHKAI	GWGCWC	1 cut(s)	627
BsiSI	CCGG	1 cut(s)	594
BslFI	GGGAC	2 cut(s)	698, 864
BsmAI	GTCTC	1 cut(s)	67
BsmFI	GGGAC	2 cut(s)	698, 864
BsnI	GGCC	3 cut(s)	212, 259, 675
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp1407I	TGTACA	1 cut(s)	915
Bsp143I	GATC	3 cut(s)	159, 656, 721
Bsp19I	CCATGG	1 cut(s)	169
BspANI	GGCC	3 cut(s)	212, 259, 675
BspCNI	CTCAG	2 cut(s)	199, 232
BspHI	TCATGA	1 cut(s)	891
BspLI	GGNNCC	2 cut(s)	598, 852
BspPI	GGATC	1 cut(s)	651
BspT107I	GGYRCC	1 cut(s)	596
BsrDI	GCAATG	1 cut(s)	878
BsrFI	RCCGGY	1 cut(s)	593
BsrGI	TGTACA	1 cut(s)	915
BsrI	ACTGG	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	593
BssECI	CCNNGG	2 cut(s)	169, 491
BssMI	GATC	3 cut(s)	159, 656, 721
BssT1I	CCWWGG	2 cut(s)	169, 491
Bst4CI	ACNGT	1 cut(s)	831
Bst6I	CTCTTC	1 cut(s)	390
BstAUI	TGTACA	1 cut(s)	915
BstBAI	YACGTR	1 cut(s)	424
BstDEI	CTNAG	3 cut(s)	207, 240, 653
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	526
BstKTI	GATC	3 cut(s)	162, 659, 724
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	3 cut(s)	159, 656, 721
BstNSI	RCATGY	1 cut(s)	916
BstSFI	CTRYAG	1 cut(s)	955
BstSNI	TACGTA	1 cut(s)	424
BstX2I	RGATCY	1 cut(s)	656
BstYI	RGATCY	1 cut(s)	656
BsuRI	GGCC	3 cut(s)	212, 259, 675
BtgI	CCRYGG	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	526
BtsI	GCAGTG	1 cut(s)	595
BtsIMutI	CAGTG	2 cut(s)	31, 595
CciI	TCATGA	1 cut(s)	891
Cfr10I	RCCGGY	1 cut(s)	593
Cfr13I	GGNCC	2 cut(s)	257, 851
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	3 cut(s)	325, 916, 940
CviAII	CATG	5 cut(s)	170, 564, 892, 913, 930
CviQI	GTAC	3 cut(s)	325, 916, 940
DdeI	CTNAG	3 cut(s)	207, 240, 653
DpnI	GATC	3 cut(s)	161, 658, 723
DpnII	GATC	3 cut(s)	159, 656, 721
DraI	TTTAAA	1 cut(s)	819
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco105I	TACGTA	1 cut(s)	424
Eco130I	CCWWGG	2 cut(s)	169, 491
Eco47I	GGWCC	1 cut(s)	851
Eco57I	CTGAAG	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	257
EcoT14I	CCWWGG	2 cut(s)	169, 491
ErhI	CCWWGG	2 cut(s)	169, 491
FaeI	CATG	5 cut(s)	173, 567, 895, 916, 933
FaiI	YATR	9 cut(s)	147, 171, 279, 291, 565, 893, 914, 931, 1012
FaqI	GGGAC	2 cut(s)	698, 864
FatI	CATG	5 cut(s)	169, 563, 891, 912, 929
FbaI	TGATCA	1 cut(s)	721
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	1005
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	1 cut(s)	1005
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	1 cut(s)	1005
HaeIII	GGCC	3 cut(s)	212, 259, 675
HapII	CCGG	1 cut(s)	594
HgaI	GACGC	1 cut(s)	398
Hin1II	CATG	5 cut(s)	173, 567, 895, 916, 933
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	8 cut(s)	82, 110, 203, 350, 454, 484, 533, 752
HpaII	CCGG	1 cut(s)	594
HphI	GGTGA	2 cut(s)	317, 761
Hpy166II	GTNNAC	3 cut(s)	29, 94, 927
Hpy188I	TCNGA	4 cut(s)	208, 241, 472, 726
Hpy188III	TCNNGA	5 cut(s)	157, 458, 825, 892, 963
Hpy8I	GTNNAC	3 cut(s)	29, 94, 927
HpyAV	CCTTC	4 cut(s)	238, 341, 467, 742
HpyCH4III	ACNGT	1 cut(s)	831
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	3 cut(s)	883, 971, 1004
HpyF3I	CTNAG	3 cut(s)	207, 240, 653
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	5 cut(s)	173, 567, 895, 916, 933
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	3 cut(s)	159, 656, 721
LmnI	GCTCC	1 cut(s)	880
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	2 cut(s)	10, 749
MalI	GATC	3 cut(s)	161, 658, 723
MboI	GATC	3 cut(s)	159, 656, 721
MboII	GAAGA	6 cut(s)	145, 214, 310, 407, 448, 493
MflI	RGATCY	1 cut(s)	656
MhlI	GDGCHC	1 cut(s)	627
MluCI	AATT	4 cut(s)	68, 218, 681, 999
MlyI	GAGTC	2 cut(s)	104, 746
MmeI	TCCRAC	2 cut(s)	683, 684
MroXI	GAANNNNTTC	2 cut(s)	500, 731
MseI	TTAA	1 cut(s)	818
MslI	CAYNNNNRTG	1 cut(s)	647
MspA1I	CMGCKG	1 cut(s)	431
MspI	CCGG	1 cut(s)	594
NcoI	CCATGG	1 cut(s)	169
NdeII	GATC	3 cut(s)	159, 656, 721
NlaIII	CATG	5 cut(s)	173, 567, 895, 916, 933
NlaIV	GGNNCC	2 cut(s)	598, 852
NmuCI	GTSAC	2 cut(s)	10, 749
NspI	RCATGY	1 cut(s)	916
PagI	TCATGA	1 cut(s)	891
PdmI	GAANNNNTTC	2 cut(s)	500, 731
PfeI	GAWTC	6 cut(s)	82, 203, 350, 454, 484, 533
PkrI	GCNGC	1 cut(s)	1006
PleI	GAGTC	2 cut(s)	104, 746
PpsI	GAGTC	2 cut(s)	104, 746
Ppu21I	YACGTR	1 cut(s)	424
PspN4I	GGNNCC	2 cut(s)	598, 852
PspPI	GGNCC	2 cut(s)	257, 851
PsuI	RGATCY	1 cut(s)	656
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	3 cut(s)	326, 917, 941
RsaNI	GTAC	3 cut(s)	325, 916, 940
RseI	CAYNNNNRTG	1 cut(s)	647
SaqAI	TTAA	1 cut(s)	818
SatI	GCNGC	1 cut(s)	1005
Sau3AI	GATC	3 cut(s)	159, 656, 721
Sau96I	GGNCC	2 cut(s)	257, 851
SchI	GAGTC	2 cut(s)	104, 746
SduI	GDGCHC	1 cut(s)	627
SfcI	CTRYAG	1 cut(s)	955
SinI	GGWCC	1 cut(s)	851
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	3 cut(s)	458, 859, 961
SmoI	CTYRAG	3 cut(s)	458, 859, 961
SnaBI	TACGTA	1 cut(s)	424
Sse9I	AATT	4 cut(s)	68, 218, 681, 999
SspMI	CTAG	1 cut(s)	45
StyI	CCWWGG	2 cut(s)	169, 491
TaaI	ACNGT	1 cut(s)	831
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	1 cut(s)	321
TasI	AATT	4 cut(s)	68, 218, 681, 999
TatI	WGTACW	2 cut(s)	915, 939
TfiI	GAWTC	6 cut(s)	82, 203, 350, 454, 484, 533
Tru1I	TTAA	1 cut(s)	818
Tru9I	TTAA	1 cut(s)	818
TscAI	CASTG	2 cut(s)	31, 595
TseFI	GTSAC	2 cut(s)	10, 749
TseI	GCWGC	1 cut(s)	1004
Tsp45I	GTSAC	2 cut(s)	10, 749
TspDTI	ATGAA	3 cut(s)	178, 537, 908
TspRI	CASTG	2 cut(s)	31, 595
VpaK11BI	GGWCC	1 cut(s)	851
XapI	RAATTY	2 cut(s)	218, 681
XceI	RCATGY	1 cut(s)	916
XmiI	GTMKAC	1 cut(s)	93
XmnI	GAANNNNTTC	2 cut(s)	500, 731
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.