Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012870

Physical Location & Seq

Genomic Coordinates Forward (+)

33633795 .. 33636315

Gene Structure 2521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1207000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGTGTTTGTGACCAAACCACCTAATGAGAACTTTTCTTATGCTAGAACCAGCAACAATGTCTCCAAATTATTTTCTGGGATTCCTCTGGTAGACCTCACAAAACCAGACTCCAAACAACTCATTGTCAAGGCCTGTGAGGAGTATGGTTTCTTCAAGATCATCAACCATGGTGTTCCAACGGATTTCATTACCAGATTGGAATCTGAGGCCATCAAATTCTTCTCCATGCCACTCTCTGAGAAGGAAAAGGCGGGGCCTCCTAATCCGTTGGGATATGGGAACAATCATATTGGGAAGAATGGTGATGTTGGGTGGGTAGAGTACCTCCTCCTCACAACCAATACAGAGTCCAATTCCCAGAGGTTTCTATCAGTTTTTGGAAATAGCGCAGAAGAGTTTTGTTCTGCTTTGAATGATTACATATCAGCTGTGAAGAAAATGGCCTGTGAGATTCTAGAGCTGATGGCTGAAGGGTTGAAGATTCAACCAAGAAATGTGTTAAGCAAACTTCTGATGGATGAACAGAGTGACTCTTGTTTCAGGCTCAATCACTACCCACTATGCCCAGAGCTTCAAGGTTTGAGTAGTGCCAGTGCCAGAAATGTGATTGGATTTGGAGAGCACACAGACCCACAAATCATTTCTGTGCTAAGATCCAACAACACATCTGGCCTCCAAATTTCTTTGGGAGATGGGAGTTGGATTTCAGTCCCCCCTGATCAGAACTCCTTCTTCATCAATGTTGGTGACTCTTTACAGGTTTTGACTAATGGGAGGTTTCAAAGTGTGAGGCACAGGGTTTTGGCAAATGGTTTAAAATCAAGAGTGTCAATGATTTATTTTGGGGGACCACCCTTGAGTGAGAAGATAGCTCCATTGCAATCTGTCATGAACGGAGAGGAGGAAAGCCTCTACGAAGAGTTTACATGGTTTGAGTACAAAAAATCTGCGTGCAGCTCAAGACTTGCAGATAACAGGCTTGGACACTTTGAGAGAATTGCAGCCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009987 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

338

Amino Acids

37.43

Weight (kDa)

5.77

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	28 - 119	2.9e-16	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	178 - 283	1.2e-28	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78440
fragaria_vesca	FvH4_3g16760 FvH4_3g16760
malus_domestica	MD05G1207000.v1.1 MD10G1194100.v1.1
prunus_persica	Prupe.4G150200_v2.0.a1
pyrus_communis	pycom05g19330 pycom10g16790
rosa_chinensis	RchiOBHm_Chr5g0027981
rosa_laevigata	RLG00000033053
rosa_multiflora	Rmu_sc0000309.1_g000005
rosa_roxburghii	Rroxscaffold_1G00051690
rosa_rugosa	Rorug05G0102600
rosa_samantha	Rh5AG196900 Rh5BG194900 Rh5CG215200 Rh5DG196700
rosa_wichuraiana	Rw5G017920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	1 cut(s)	651
AcsI	RAATTY	2 cut(s)	218, 681
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	2 cut(s)	326, 941
AgsI	TTSAA	6 cut(s)	157, 415, 481, 488, 578, 785
AluBI	AGCT	5 cut(s)	431, 463, 574, 875, 960
AluI	AGCT	5 cut(s)	431, 463, 574, 875, 960
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	1 cut(s)	651
AoxI	GGCC	5 cut(s)	132, 210, 257, 444, 673
ApeKI	GCWGC	2 cut(s)	957, 1004
ApoI	RAATTY	2 cut(s)	218, 681
Asp700I	GAANNNNTTC	1 cut(s)	731
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	2 cut(s)	257, 851
AsuHPI	GGTGA	2 cut(s)	317, 761
AvaII	GGWCC	1 cut(s)	851
BarI	GAAGNNNNNNTAC	2 cut(s)	137, 169
Bbv12I	GWGCWC	1 cut(s)	627
BbvI	GCAGC	1 cut(s)	969
BccI	CCATC	4 cut(s)	221, 460, 511, 689
BclI	TGATCA	1 cut(s)	721
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	2 cut(s)	45, 458
BisI	GCNGC	2 cut(s)	958, 1005
BlsI	GCNGC	2 cut(s)	959, 1006
Bme18I	GGWCC	1 cut(s)	851
BmgT120I	GGNCC	2 cut(s)	257, 851
BmiI	GGNNCC	2 cut(s)	258, 852
BpuEI	CTTGAG	2 cut(s)	880, 946
BsaBI	GATNNNNATC	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bse1I	ACTGG	1 cut(s)	594
Bse3DI	GCAATG	1 cut(s)	878
Bse8I	GATNNNNATC	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	526
BseJI	GATNNNNATC	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	878
BseMII	CTCAG	2 cut(s)	198, 231
BseNI	ACTGG	1 cut(s)	594
BseRI	GAGGAG	4 cut(s)	155, 320, 323, 917
BseXI	GCAGC	1 cut(s)	969
BsgI	GTGCAG	1 cut(s)	976
BshFI	GGCC	5 cut(s)	134, 212, 259, 446, 675
BsiHKAI	GWGCWC	1 cut(s)	627
BslFI	GGGAC	2 cut(s)	698, 864
BsmAI	GTCTC	1 cut(s)	67
BsmFI	GGGAC	2 cut(s)	698, 864
BsnI	GGCC	5 cut(s)	134, 212, 259, 446, 675
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp143I	GATC	3 cut(s)	159, 656, 721
Bsp19I	CCATGG	1 cut(s)	169
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	5 cut(s)	134, 212, 259, 446, 675
BspCNI	CTCAG	2 cut(s)	199, 232
BspHI	TCATGA	1 cut(s)	891
BspLI	GGNNCC	2 cut(s)	258, 852
BspPI	GGATC	1 cut(s)	651
BsrDI	GCAATG	1 cut(s)	878
BsrI	ACTGG	1 cut(s)	594
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	3 cut(s)	159, 656, 721
BssT1I	CCWWGG	1 cut(s)	169
Bst6I	CTCTTC	2 cut(s)	390, 915
BstC8I	GCNNGC	1 cut(s)	955
BstDEI	CTNAG	3 cut(s)	207, 240, 653
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	526
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	3 cut(s)	162, 659, 724
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	3 cut(s)	159, 656, 721
BstV1I	GCAGC	1 cut(s)	969
BstX2I	RGATCY	1 cut(s)	656
BstYI	RGATCY	1 cut(s)	656
BsuRI	GGCC	5 cut(s)	134, 212, 259, 446, 675
BtgI	CCRYGG	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	601
Cac8I	GCNNGC	1 cut(s)	955
CciI	TCATGA	1 cut(s)	891
CfoI	GCGC	1 cut(s)	392
Cfr13I	GGNCC	2 cut(s)	257, 851
Csp6I	GTAC	2 cut(s)	325, 940
CviAII	CATG	4 cut(s)	170, 229, 892, 930
CviQI	GTAC	2 cut(s)	325, 940
DdeI	CTNAG	3 cut(s)	207, 240, 653
DpnI	GATC	3 cut(s)	161, 658, 723
DpnII	GATC	3 cut(s)	159, 656, 721
DraI	TTTAAA	1 cut(s)	819
Eam1104I	CTCTTC	2 cut(s)	390, 915
EarI	CTCTTC	2 cut(s)	390, 915
Eco130I	CCWWGG	1 cut(s)	169
Eco147I	AGGCCT	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	851
Eco57I	CTGAAG	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	4 cut(s)	173, 232, 895, 933
FaqI	GGGAC	2 cut(s)	698, 864
FatI	CATG	4 cut(s)	169, 228, 891, 929
FauI	CCCGC	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	721
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	958, 1005
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	2 cut(s)	958, 1005
FspBI	CTAG	2 cut(s)	45, 458
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	2 cut(s)	958, 1005
HaeIII	GGCC	5 cut(s)	134, 212, 259, 446, 675
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	4 cut(s)	173, 232, 895, 933
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HinfI	GANTC	8 cut(s)	82, 110, 203, 350, 454, 484, 533, 752
HphI	GGTGA	2 cut(s)	317, 761
Hpy166II	GTNNAC	2 cut(s)	94, 927
Hpy188I	TCNGA	4 cut(s)	208, 241, 516, 726
Hpy188III	TCNNGA	5 cut(s)	157, 458, 825, 892, 963
Hpy8I	GTNNAC	2 cut(s)	94, 927
HpyAV	CCTTC	3 cut(s)	238, 467, 742
HpyCH4V	TGCA	4 cut(s)	883, 957, 971, 1004
HpyF3I	CTNAG	3 cut(s)	207, 240, 653
Hsp92II	CATG	4 cut(s)	173, 232, 895, 933
HspAI	GCGC	1 cut(s)	390
Ksp22I	TGATCA	1 cut(s)	721
Kzo9I	GATC	3 cut(s)	159, 656, 721
LmnI	GCTCC	1 cut(s)	880
Lsp1109I	GCAGC	1 cut(s)	969
MaeI	CTAG	2 cut(s)	45, 458
MaeIII	GTNAC	3 cut(s)	10, 530, 749
MalI	GATC	3 cut(s)	161, 658, 723
MboI	GATC	3 cut(s)	159, 656, 721
MboII	GAAGA	9 cut(s)	145, 214, 310, 407, 448, 493, 727, 880, 932
MflI	RGATCY	1 cut(s)	656
MhlI	GDGCHC	1 cut(s)	627
MluCI	AATT	5 cut(s)	68, 218, 355, 681, 999
MlyI	GAGTC	4 cut(s)	104, 359, 527, 746
MmeI	TCCRAC	3 cut(s)	203, 683, 684
MroXI	GAANNNNTTC	1 cut(s)	731
MseI	TTAA	2 cut(s)	503, 818
MslI	CAYNNNNRTG	1 cut(s)	647
MspA1I	CMGCKG	1 cut(s)	431
NcoI	CCATGG	1 cut(s)	169
NdeII	GATC	3 cut(s)	159, 656, 721
NlaIII	CATG	4 cut(s)	173, 232, 895, 933
NlaIV	GGNNCC	2 cut(s)	258, 852
NmuCI	GTSAC	3 cut(s)	10, 530, 749
PagI	TCATGA	1 cut(s)	891
PceI	AGGCCT	1 cut(s)	134
PdmI	GAANNNNTTC	1 cut(s)	731
PfeI	GAWTC	4 cut(s)	82, 203, 454, 484
PkrI	GCNGC	2 cut(s)	959, 1006
PleI	GAGTC	4 cut(s)	104, 358, 527, 746
PpsI	GAGTC	4 cut(s)	104, 358, 527, 746
PspN4I	GGNNCC	2 cut(s)	258, 852
PspPI	GGNCC	2 cut(s)	257, 851
PsuI	RGATCY	1 cut(s)	656
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	2 cut(s)	326, 941
RsaNI	GTAC	2 cut(s)	325, 940
RseI	CAYNNNNRTG	1 cut(s)	647
SaqAI	TTAA	2 cut(s)	503, 818
SatI	GCNGC	2 cut(s)	958, 1005
Sau3AI	GATC	3 cut(s)	159, 656, 721
Sau96I	GGNCC	2 cut(s)	257, 851
SchI	GAGTC	4 cut(s)	104, 359, 527, 746
SduI	GDGCHC	1 cut(s)	627
SinI	GGWCC	1 cut(s)	851
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	2 cut(s)	859, 961
SmoI	CTYRAG	2 cut(s)	859, 961
Sse9I	AATT	5 cut(s)	68, 218, 355, 681, 999
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	2 cut(s)	45, 458
StuI	AGGCCT	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	169
TasI	AATT	5 cut(s)	68, 218, 355, 681, 999
TatI	WGTACW	1 cut(s)	939
TfiI	GAWTC	4 cut(s)	82, 203, 454, 484
Tru1I	TTAA	2 cut(s)	503, 818
Tru9I	TTAA	2 cut(s)	503, 818
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	3 cut(s)	10, 530, 749
TseI	GCWGC	2 cut(s)	957, 1004
Tsp45I	GTSAC	3 cut(s)	10, 530, 749
TspDTI	ATGAA	4 cut(s)	178, 537, 727, 908
TspGWI	ACGGA	3 cut(s)	197, 258, 912
TspRI	CASTG	1 cut(s)	601
VpaK11BI	GGWCC	1 cut(s)	851
XapI	RAATTY	2 cut(s)	218, 681
XbaI	TCTAGA	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	93
XmnI	GAANNNNTTC	1 cut(s)	731
XspI	CTAG	2 cut(s)	45, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.