Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012870

Physical Location & Seq

Genomic Coordinates Reverse (-)

10587253 .. 10589141

Gene Structure 1889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGTGCTTTTGTCTAAACCAGCTACTGAATGCTGCTCTAGTTATAGCAGAAACCTCAAACTCTCCAAGTCATCCTCCTCTGGAATCCCTGTCATAGACCTGTCCAAACCAGACTCCAAGCAACTCATTGTGAAGGCTTGTGAGGAGTTTGGATTCTTCAAAGTCATCAACCATGGTGTTCCTATGGATTTCATTAACAGATTGGAATCTGAGGCCATCAAATTCTTTTCCTTGCCAGATTCTGAGAAAGAAAAAGCAGGTCGTGCTGATCCATTTGGATATGGCAGCAAGCATATTGGGAGAAATGGTGATGTGGGCTGGGTTGAGTACCTTCTACTTAAAGCCAACATAGAAGCCAATTCTGACAGATTCAAATTAGTCTATGGAACAAACCCAGATGAGTTTCGTTCTGCTCTGAATGATTATATTCAAGCTGTGAGGACTATGGCTTGTGAGATTCTTGAACTGATGGCAGAAGGATTGAATATTGGGCCAGGGAATGTGTTCAGCAAGTTCTTGTTGGATGAACAGAGTGACTCTTTATTCAGGCTCAATCACTACCCACCATGCCCAGAGCTTCAAGGTTTGAGTGAACACAGTGACAGAAATGTGGTTGGATTTGGAGAGCACACAGACCCTCAAATCATTTCCATACTAAGATCCAACAACACCTCTGGCCTCCAAATTTTGGGAGATGGCACTTGGATTTCAGTGCCTCCAGACCAGTACTCCTTCTTCATTAATGTTGGTGATTCTCTAAAGGTTTTGACAAACGGGAGGTTTCAAAGTGTGAGGCACAGGGTTTTAGCAAATGGGTCAAAATCAAGGGTTTCGATGATCTTCTTTGGGGGATCACCCTTGACTGGAAAAATAGCTCCATTGCCATCTATCATGAAAGAAGAGGAACAGAGCATGTACAAAGAGTTCACATGGTTCGAGTACAAAACTGTTTGCTACCACTCAAGATTGGCTGACAATAGGCTTGGACACTTTGAGAGAATTGAGGCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009987 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

338

Amino Acids

37.73

Weight (kDa)

6.1

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	29 - 120	1.1e-17	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	179 - 282	2.6e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78440
fragaria_vesca	FvH4_3g16760 FvH4_3g16760
malus_domestica	MD05G1207000.v1.1 MD10G1194100.v1.1
prunus_persica	Prupe.4G150200_v2.0.a1
pyrus_communis	pycom05g19330 pycom10g16790
rosa_chinensis	RchiOBHm_Chr5g0027981
rosa_laevigata	RLG00000033053
rosa_multiflora	Rmu_sc0000309.1_g000005
rosa_roxburghii	Rroxscaffold_1G00051690
rosa_rugosa	Rorug05G0102600
rosa_samantha	Rh5AG196900 Rh5BG194900 Rh5CG215200 Rh5DG196700
rosa_wichuraiana	Rw5G017920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	688
AclWI	GGATC	3 cut(s)	263, 654, 859
AcsI	RAATTY	2 cut(s)	221, 684
AfaI	GTAC	4 cut(s)	329, 728, 917, 941
AfiI	CCNNNNNNNGG	2 cut(s)	688, 863
AgsI	TTSAA	7 cut(s)	160, 373, 431, 464, 484, 581, 785
AjnI	CCWGG	1 cut(s)	493
AluBI	AGCT	4 cut(s)	23, 434, 577, 875
AluI	AGCT	4 cut(s)	23, 434, 577, 875
Alw21I	GWGCWC	1 cut(s)	630
AlwI	GGATC	3 cut(s)	263, 654, 859
AlwNI	CAGNNNCTG	2 cut(s)	26, 242
AoxI	GGCC	4 cut(s)	213, 491, 676, 1005
ApeKI	GCWGC	2 cut(s)	33, 285
ApoI	RAATTY	2 cut(s)	221, 684
AseI	ATTAAT	1 cut(s)	741
Asp700I	GAANNNNTTC	1 cut(s)	503
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	3 cut(s)	320, 761, 846
BarI	GAAGNNNNNNTAC	2 cut(s)	719, 751
Bbv12I	GWGCWC	1 cut(s)	630
BbvI	GCAGC	2 cut(s)	20, 297
BccI	CCATC	4 cut(s)	224, 463, 689, 892
BciT130I	CCWGG	1 cut(s)	495
BfaI	CTAG	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	248
BisI	GCNGC	2 cut(s)	34, 286
BlsI	GCNGC	2 cut(s)	35, 287
BmcAI	AGTACT	1 cut(s)	728
Bme1390I	CCNGG	1 cut(s)	495
BmgT120I	GGNCC	1 cut(s)	491
BmrFI	CCNGG	1 cut(s)	495
BpmI	CTGGAG	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	946
BsaBI	GATNNNNATC	1 cut(s)	205
BsaJI	CCNNGG	2 cut(s)	172, 494
BsaXI	ACNNNNNCTCC	4 cut(s)	292, 322, 713, 743
Bsc4I	CCNNNNNNNGG	2 cut(s)	688, 863
Bse1I	ACTGG	2 cut(s)	724, 868
Bse3DI	GCAATG	1 cut(s)	878
Bse8I	GATNNNNATC	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	2 cut(s)	172, 494
BseGI	GGATG	2 cut(s)	71, 529
BseJI	GATNNNNATC	1 cut(s)	205
BseLI	CCNNNNNNNGG	2 cut(s)	688, 863
BseMI	GCAATG	1 cut(s)	878
BseMII	CTCAG	2 cut(s)	201, 234
BseNI	ACTGG	2 cut(s)	724, 868
BseRI	GAGGAG	2 cut(s)	67, 158
BseXI	GCAGC	2 cut(s)	20, 297
BseYI	CCCAGC	1 cut(s)	318
BshFI	GGCC	4 cut(s)	215, 493, 678, 1007
BsiHKAI	GWGCWC	1 cut(s)	630
BslI	CCNNNNNNNGG	2 cut(s)	688, 863
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	4 cut(s)	215, 493, 678, 1007
Bsp1286I	GDGCHC	1 cut(s)	630
Bsp1407I	TGTACA	1 cut(s)	915
Bsp143I	GATC	4 cut(s)	268, 659, 837, 851
Bsp19I	CCATGG	1 cut(s)	172
BspANI	GGCC	4 cut(s)	215, 493, 678, 1007
BspCNI	CTCAG	2 cut(s)	202, 235
BspHI	TCATGA	1 cut(s)	891
BspMI	ACCTGC	1 cut(s)	248
BspPI	GGATC	3 cut(s)	263, 654, 859
BsrDI	GCAATG	1 cut(s)	878
BsrGI	TGTACA	1 cut(s)	915
BsrI	ACTGG	2 cut(s)	724, 868
BssECI	CCNNGG	2 cut(s)	172, 494
BssMI	GATC	4 cut(s)	268, 659, 837, 851
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	2 cut(s)	599, 949
Bst6I	CTCTTC	1 cut(s)	894
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstAUI	TGTACA	1 cut(s)	915
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	3 cut(s)	210, 243, 656
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	71, 529
BstKTI	GATC	4 cut(s)	271, 662, 840, 854
BstMBI	GATC	4 cut(s)	268, 659, 837, 851
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	495
BstNSI	RCATGY	1 cut(s)	916
BstSCI	CCNGG	1 cut(s)	493
BstV1I	GCAGC	2 cut(s)	20, 297
BstX2I	RGATCY	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	659
BsuRI	GGCC	4 cut(s)	215, 493, 678, 1007
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	71, 529
BtsIMutI	CAGTG	2 cut(s)	604, 717
BveI	ACCTGC	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	290
CaiI	CAGNNNCTG	2 cut(s)	26, 242
CciI	TCATGA	1 cut(s)	891
Cfr13I	GGNCC	1 cut(s)	491
Csp6I	GTAC	4 cut(s)	328, 727, 916, 940
CviAII	CATG	5 cut(s)	173, 567, 892, 913, 930
CviQI	GTAC	4 cut(s)	328, 727, 916, 940
DdeI	CTNAG	3 cut(s)	210, 243, 656
DpnI	GATC	4 cut(s)	270, 661, 839, 853
DpnII	GATC	4 cut(s)	268, 659, 837, 851
Eam1104I	CTCTTC	1 cut(s)	894
EarI	CTCTTC	1 cut(s)	894
Eco130I	CCWWGG	1 cut(s)	172
Eco147I	AGGCCT	1 cut(s)	1007
EcoRII	CCWGG	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	5 cut(s)	176, 570, 895, 916, 933
FatI	CATG	5 cut(s)	172, 566, 891, 912, 929
Fnu4HI	GCNGC	2 cut(s)	34, 286
FokI	GGATG	2 cut(s)	58, 536
Fsp4HI	GCNGC	2 cut(s)	34, 286
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	2 cut(s)	34, 286
GsaI	CCCAGC	1 cut(s)	322
GsuI	CTGGAG	1 cut(s)	702
HaeIII	GGCC	4 cut(s)	215, 493, 678, 1007
Hin1II	CATG	5 cut(s)	176, 570, 895, 916, 933
HinfI	GANTC	9 cut(s)	84, 113, 153, 206, 239, 369, 457, 536, 752
HphI	GGTGA	3 cut(s)	320, 761, 846
Hpy166II	GTNNAC	2 cut(s)	593, 927
Hpy188I	TCNGA	4 cut(s)	211, 244, 364, 417
Hpy188III	TCNNGA	5 cut(s)	81, 461, 719, 892, 963
Hpy8I	GTNNAC	2 cut(s)	593, 927
HpyAV	CCTTC	4 cut(s)	127, 341, 470, 742
HpyCH4III	ACNGT	2 cut(s)	599, 949
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	3 cut(s)	210, 243, 656
Hsp92II	CATG	5 cut(s)	176, 570, 895, 916, 933
Kzo9I	GATC	4 cut(s)	268, 659, 837, 851
LmnI	GCTCC	1 cut(s)	880
Lsp1109I	GCAGC	2 cut(s)	20, 297
MaeI	CTAG	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	533, 599
MalI	GATC	4 cut(s)	270, 661, 839, 853
MboI	GATC	4 cut(s)	268, 659, 837, 851
MboII	GAAGA	4 cut(s)	148, 727, 832, 911
MflI	RGATCY	1 cut(s)	659
MhlI	GDGCHC	1 cut(s)	630
MluCI	AATT	5 cut(s)	221, 358, 374, 684, 999
MlyI	GAGTC	2 cut(s)	107, 530
MmeI	TCCRAC	3 cut(s)	501, 595, 687
MroXI	GAANNNNTTC	1 cut(s)	503
MseI	TTAA	4 cut(s)	195, 339, 741, 1012
MspR9I	CCNGG	1 cut(s)	495
Mva1269I	GAATGC	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	495
MwoI	GCNNNNNNNGC	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	4 cut(s)	268, 659, 837, 851
NlaIII	CATG	5 cut(s)	176, 570, 895, 916, 933
NmuCI	GTSAC	2 cut(s)	533, 599
NspI	RCATGY	1 cut(s)	916
PagI	TCATGA	1 cut(s)	891
PceI	AGGCCT	1 cut(s)	1007
PctI	GAATGC	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	503
PfeI	GAWTC	7 cut(s)	84, 153, 206, 239, 369, 457, 752
PflMI	CCANNNNNTGG	1 cut(s)	688
PkrI	GCNGC	2 cut(s)	35, 287
PleI	GAGTC	2 cut(s)	107, 530
PpsI	GAGTC	2 cut(s)	107, 530
PshBI	ATTAAT	1 cut(s)	741
Psp6I	CCWGG	1 cut(s)	493
PspFI	CCCAGC	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	493
PspPI	GGNCC	1 cut(s)	491
PsrI	GAACNNNNNNTAC	2 cut(s)	908, 940
PstNI	CAGNNNCTG	2 cut(s)	26, 242
PsuI	RGATCY	1 cut(s)	659
RsaI	GTAC	4 cut(s)	329, 728, 917, 941
RsaNI	GTAC	4 cut(s)	328, 727, 916, 940
SaqAI	TTAA	4 cut(s)	195, 339, 741, 1012
SatI	GCNGC	2 cut(s)	34, 286
Sau3AI	GATC	4 cut(s)	268, 659, 837, 851
Sau96I	GGNCC	1 cut(s)	491
ScaI	AGTACT	1 cut(s)	728
SchI	GAGTC	2 cut(s)	107, 530
ScrFI	CCNGG	1 cut(s)	495
SduI	GDGCHC	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	961
SmoI	CTYRAG	1 cut(s)	961
Sse9I	AATT	5 cut(s)	221, 358, 374, 684, 999
SseBI	AGGCCT	1 cut(s)	1007
SspI	AATATT	1 cut(s)	487
SspMI	CTAG	1 cut(s)	39
StuI	AGGCCT	1 cut(s)	1007
StyD4I	CCNGG	1 cut(s)	493
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	599, 949
TaqI	TCGA	2 cut(s)	833, 936
TasI	AATT	5 cut(s)	221, 358, 374, 684, 999
TatI	WGTACW	3 cut(s)	726, 915, 939
TfiI	GAWTC	7 cut(s)	84, 153, 206, 239, 369, 457, 752
Tru1I	TTAA	4 cut(s)	195, 339, 741, 1012
Tru9I	TTAA	4 cut(s)	195, 339, 741, 1012
TscAI	CASTG	2 cut(s)	604, 717
TseFI	GTSAC	2 cut(s)	533, 599
TseI	GCWGC	2 cut(s)	33, 285
Tsp45I	GTSAC	2 cut(s)	533, 599
TspDTI	ATGAA	4 cut(s)	181, 540, 727, 908
TspRI	CASTG	2 cut(s)	604, 717
Van91I	CCANNNNNTGG	1 cut(s)	688
VspI	ATTAAT	1 cut(s)	741
XapI	RAATTY	2 cut(s)	221, 684
XceI	RCATGY	1 cut(s)	916
XmnI	GAANNNNTTC	1 cut(s)	503
XspI	CTAG	1 cut(s)	39
ZrmI	AGTACT	1 cut(s)	728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.