AT1G78820

Epidermis-specific secreted glycoprotein EP1-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
29634096 .. 29635931
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78820.1

Sequence Viewer

Length: 1368 bp
ATGCTTAGGTTTGATTACTTACTAATCACGGCACTTGCCATTTCAACTGTTTCGGTTGTCATGGCCCAAGTCCCTCCCGAGAAACAATTCAGAGTGCTCAACGAACCCGGCTACGCCCCATACATCACCGAGTACGACGCGAGTTACCGATTCCTCAACTCACCGAATCAGAATTTCTTCACAATTCCTTTCCAGCTCATGTTTTACAATACAACTCCTAGCGCCTACGTGTTAGCTCTCCGAGTCGGAACGAGGCGTGACATGAGTTTCACGCGTTGGATCTGGGACGCCAATCGCAACAACCCCGTCGGAGACAACTCCACACTCTCATTCGGCCGAAACGGAAACCTTGTGCTCGCTGAGTTAAACGGCCAAGTCAAGTGGCAGACTAACACAGCCAACAAAGGCGTCACCGGATTCCAAATCTTGCCCAATGGAAACATGGTGCTACACGACAAACATGGAAAATTCGTTTGGCAGAGTTTCGATCATCCCACCGATACACTCCTCGTCGGCCAATCCCTAAAAGTTAACGGAGTTAACAAACTCGTTAGCCGTACATCTGATATGAACGGCTCCGATGGTCCGTACAGCATGGTGTTGGACAACAAAGGCTTAACCATGTACGTTAACAAAACCGGTACGCCGTTAGTTTACGGGGGATGGACGGATCACGACTTCCGCGGTACCGTCACGTTCGCCGTTACAAGAGAGTTCGATAATTTAACGGAGCCGTCAGCTTACGAGCTTCTCTTAGAACCCGCACCACAACCCGCTACGAACCCGGGTAATAACCGCCGGTTACTCCAAGTTAGACCAATCGGAAGCGGAGGAGGAACTTTAAACTTAAACAAAATCAACTACAATGGAACGATATCGTATCTGAGACTTGGATCCGACGGTAGCCTCAAGGCCTTCTCGTATTTCCCTGCCGCGACGTATCTCGAATGGGAAGAGACTTTCGCTTTCTTCTCCAATTACTTCGTCCGTCAATGCGGTTTGCCGACGTTTTGCGGCGATTACGGTTACTGCGATCGAGGAATGTGCGTCGGGTGCCCTACACCGAAAGGTCTGTTAGCTTGGAGTGATAAATGCGCTCCACCTAAAACGACGCAGTTTTGCAGCGGAGGCAAGGGTAAAGCTGTCAATTATTACAAGATAGTCGGTGTTGAGCATTTTACTGGGCCGTATGTTAATGATGGACAAGGCCCAACTTCTGTGAACGATTGCAAGGCTAAGTGCGATCGTGATTGCAAGTGTTTGGGTTACTTCTACAAGGAGAAGGACAAGAAATGTTTGCTTGCTCCTCTTCTTGGTACACTTATCAAAGATGCCAACACTTCTTCCGTTGCTTACATCAAATATTAG

Protein Analysis

455

Amino Acids

50.59

Weight (kDa)

8.75

Isoelectric Point (pI)

28.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 94 - 182 5.5e-20 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016568)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78820 AT1G78830
fragaria_vesca FvH4_3g18370
malus_domestica MD11G1262700.v1.1
prunus_persica Prupe.4G165500_v2.0.a1
pyrus_communis pycom11g23160
rosa_laevigata RLG00000033281
rosa_multiflora Rmu_sc0001523.1_g000002
rosa_roxburghii Rroxscaffold_1G00049250
rosa_rugosa Rorug05G0122300
rosa_samantha Rh5BG214700 Rh5CG238500 Rh5DG219200
rosa_wichuraiana Rw5G019720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 686
AccB1I GGYRCC 2 cut(s) 686, 1053
AccII CGCG 4 cut(s) 140, 274, 684, 935
AclWI GGATC 4 cut(s) 287, 678, 888, 901
AcoI YGGCCR 3 cut(s) 334, 370, 514
AcsI RAATTY 2 cut(s) 172, 467
AcyI GRCGYC 2 cut(s) 288, 408
AfaI GTAC 7 cut(s) 134, 559, 590, 626, 643, 688, 1318
AfiI CCNNNNNNNGG 1 cut(s) 1313
AflIII ACRYGT 2 cut(s) 228, 272
AgeI ACCGGT 1 cut(s) 638
AgsI TTSAA 1 cut(s) 45
AjuI GAANNNNNNNTTGG 2 cut(s) 457, 489
AluBI AGCT 6 cut(s) 196, 236, 740, 748, 1079, 1142
AluI AGCT 6 cut(s) 196, 236, 740, 748, 1079, 1142
Alw21I GWGCWC 2 cut(s) 99, 357
Alw26I GTCTC 3 cut(s) 306, 880, 950
AlwI GGATC 4 cut(s) 287, 678, 888, 901
Ama87I CYCGRG 2 cut(s) 77, 784
AoxI GGCC 7 cut(s) 63, 334, 370, 514, 912, 1184, 1207
ApeKI GCWGC 1 cut(s) 1122
ApoI RAATTY 2 cut(s) 172, 467
AsiGI ACCGGT 1 cut(s) 638
Asp700I GAANNNNTTC 2 cut(s) 86, 176
Asp718I GGTACC 1 cut(s) 686
AspLEI GCGC 2 cut(s) 224, 1097
AspS9I GGNCC 4 cut(s) 64, 584, 1184, 1208
AsuC2I CCSGG 3 cut(s) 108, 785, 786
AsuHPI GGTGA 3 cut(s) 118, 153, 403
AvaI CYCGRG 2 cut(s) 77, 784
AvaII GGWCC 1 cut(s) 584
BaeGI GKGCMC 1 cut(s) 1058
BamHI GGATCC 1 cut(s) 893
BanI GGYRCC 2 cut(s) 686, 1053
Bbv12I GWGCWC 2 cut(s) 99, 357
BbvI GCAGC 1 cut(s) 1134
BccI CCATC 3 cut(s) 575, 657, 1193
BceAI ACGGC 8 cut(s) 45, 385, 540, 589, 631, 686, 718, 1171
BcgI CGANNNNNNTGC 2 cut(s) 1026, 1060
BcnI CCSGG 3 cut(s) 108, 785, 786
BcoDI GTCTC 3 cut(s) 306, 880, 950
BfaI CTAG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 3 cut(s) 933, 1015, 1123
BlsI GCNGC 3 cut(s) 934, 1016, 1124
Bme1390I CCNGG 3 cut(s) 108, 785, 786
Bme18I GGWCC 1 cut(s) 584
BmeT110I CYCGRG 2 cut(s) 77, 784
BmgT120I GGNCC 4 cut(s) 64, 584, 1184, 1208
BmiI GGNNCC 5 cut(s) 577, 688, 732, 895, 1055
BmrFI CCNGG 3 cut(s) 108, 785, 786
BmrI ACTGGG 1 cut(s) 1191
BmsI GCATC 1 cut(s) 1321
BmuI ACTGGG 1 cut(s) 1191
Bpu10I CCTNAGC 1 cut(s) 5
BpuEI CTTGAG 1 cut(s) 893
BpuMI CCSGG 3 cut(s) 108, 785, 786
BsaAI YACGTR 1 cut(s) 229
BsaHI GRCGYC 2 cut(s) 288, 408
BsaJI CCNNGG 2 cut(s) 682, 784
BsaWI WCCGGW 2 cut(s) 413, 638
Bsc4I CCNNNNNNNGG 1 cut(s) 1313
Bse118I RCCGGY 2 cut(s) 638, 798
Bse1I ACTGG 1 cut(s) 1186
BseDI CCNNGG 2 cut(s) 682, 784
BseGI GGATG 2 cut(s) 490, 668
BseLI CCNNNNNNNGG 1 cut(s) 1313
BseMII CTCAG 2 cut(s) 351, 875
BseNI ACTGG 1 cut(s) 1186
BseRI GAGGAG 3 cut(s) 497, 846, 1296
BseSI GKGCMC 1 cut(s) 1058
BseX3I CGGCCG 1 cut(s) 334
BseXI GCAGC 1 cut(s) 1134
Bsh1236I CGCG 4 cut(s) 140, 274, 684, 935
Bsh1285I CGRYCG 3 cut(s) 337, 1036, 1246
BshFI GGCC 7 cut(s) 65, 336, 372, 516, 914, 1186, 1209
BshNI GGYRCC 2 cut(s) 686, 1053
BshTI ACCGGT 1 cut(s) 638
BsiEI CGRYCG 3 cut(s) 337, 1036, 1246
BsiHKAI GWGCWC 2 cut(s) 99, 357
BsiHKCI CYCGRG 2 cut(s) 77, 784
BsiSI CCGG 5 cut(s) 108, 414, 639, 785, 799
BslFI GGGAC 2 cut(s) 56, 299
BslI CCNNNNNNNGG 1 cut(s) 1313
BsmAI GTCTC 3 cut(s) 306, 880, 950
BsmFI GGGAC 2 cut(s) 56, 299
BsnI GGCC 7 cut(s) 65, 336, 372, 516, 914, 1186, 1209
BsoBI CYCGRG 2 cut(s) 77, 784
Bsp1286I GDGCHC 3 cut(s) 99, 357, 1058
Bsp143I GATC 6 cut(s) 279, 487, 670, 893, 1033, 1243
BspANI GGCC 7 cut(s) 65, 336, 372, 516, 914, 1186, 1209
BspCNI CTCAG 2 cut(s) 352, 876
BspFNI CGCG 4 cut(s) 140, 274, 684, 935
BspLI GGNNCC 5 cut(s) 577, 688, 732, 895, 1055
BspPI GGATC 4 cut(s) 287, 678, 888, 901
BspT107I GGYRCC 2 cut(s) 686, 1053
BsrFI RCCGGY 2 cut(s) 638, 798
BsrI ACTGG 1 cut(s) 1186
BssAI RCCGGY 2 cut(s) 638, 798
BssECI CCNNGG 2 cut(s) 682, 784
BssMI GATC 6 cut(s) 279, 487, 670, 893, 1033, 1243
BssNI GRCGYC 2 cut(s) 288, 408
Bst4CI ACNGT 4 cut(s) 49, 691, 902, 1025
Bst6I CTCTTC 2 cut(s) 948, 1314
BstACI GRCGYC 2 cut(s) 288, 408
BstBAI YACGTR 1 cut(s) 229
BstC8I GCNNGC 2 cut(s) 357, 1302
BstDEI CTNAG 5 cut(s) 5, 360, 754, 884, 1236
BstDSI CCRYGG 1 cut(s) 682
BstF5I GGATG 2 cut(s) 490, 668
BstFNI CGCG 4 cut(s) 140, 274, 684, 935
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 2 cut(s) 224, 1097
BstKTI GATC 6 cut(s) 282, 490, 673, 896, 1036, 1246
BstMAI GTCTC 3 cut(s) 306, 880, 950
BstMBI GATC 6 cut(s) 279, 487, 670, 893, 1033, 1243
BstMCI CGRYCG 3 cut(s) 337, 1036, 1246
BstMWI GCNNNNNNNGC 2 cut(s) 1053, 1128
BstSCI CCNGG 3 cut(s) 106, 783, 784
BstSLI GKGCMC 1 cut(s) 1058
BstUI CGCG 4 cut(s) 140, 274, 684, 935
BstV1I GCAGC 1 cut(s) 1134
BstX2I RGATCY 2 cut(s) 279, 893
BstYI RGATCY 2 cut(s) 279, 893
BstZI CGGCCG 1 cut(s) 334
BsuRI GGCC 7 cut(s) 65, 336, 372, 516, 914, 1186, 1209
BtgI CCRYGG 1 cut(s) 682
BtsCI GGATG 2 cut(s) 490, 668
Cac8I GCNNGC 2 cut(s) 357, 1302
CfoI GCGC 2 cut(s) 224, 1097
Cfr10I RCCGGY 2 cut(s) 638, 798
Cfr13I GGNCC 4 cut(s) 64, 584, 1184, 1208
Cfr42I CCGCGG 1 cut(s) 685
Cfr9I CCCGGG 1 cut(s) 784
CseI GACGC 5 cut(s) 146, 296, 397, 1036, 1120
Csp6I GTAC 7 cut(s) 133, 558, 589, 625, 642, 687, 1317
CspAI ACCGGT 1 cut(s) 638
CspCI CAANNNNNGTGG 2 cut(s) 362, 397
CviAII CATG 7 cut(s) 61, 199, 262, 442, 461, 595, 622
CviQI GTAC 7 cut(s) 133, 558, 589, 625, 642, 687, 1317
DdeI CTNAG 5 cut(s) 5, 360, 754, 884, 1236
DpnI GATC 6 cut(s) 281, 489, 672, 895, 1035, 1245
DpnII GATC 6 cut(s) 279, 487, 670, 893, 1033, 1243
DraI TTTAAA 1 cut(s) 843
EaeI YGGCCR 3 cut(s) 334, 370, 514
EagI CGGCCG 1 cut(s) 334
Eam1104I CTCTTC 2 cut(s) 948, 1314
EarI CTCTTC 2 cut(s) 948, 1314
EclXI CGGCCG 1 cut(s) 334
Eco147I AGGCCT 1 cut(s) 914
Eco32I GATATC 1 cut(s) 876
Eco47I GGWCC 1 cut(s) 584
Eco52I CGGCCG 1 cut(s) 334
Eco88I CYCGRG 2 cut(s) 77, 784
EcoRV GATATC 1 cut(s) 876
FaeI CATG 7 cut(s) 64, 202, 265, 445, 464, 598, 625
FaqI GGGAC 2 cut(s) 56, 299
FatI CATG 7 cut(s) 60, 198, 261, 441, 460, 594, 621
FauI CCCGC 2 cut(s) 769, 781
Fnu4HI GCNGC 3 cut(s) 933, 1015, 1123
FokI GGATG 2 cut(s) 477, 675
Fsp4HI GCNGC 3 cut(s) 933, 1015, 1123
FspBI CTAG 1 cut(s) 219
GlaI GCGC 2 cut(s) 223, 1096
GluI GCNGC 3 cut(s) 933, 1015, 1123
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 7 cut(s) 65, 336, 372, 516, 914, 1186, 1209
HapII CCGG 5 cut(s) 108, 414, 639, 785, 799
HgaI GACGC 5 cut(s) 146, 296, 397, 1036, 1120
HhaI GCGC 2 cut(s) 224, 1097
Hin1I GRCGYC 2 cut(s) 288, 408
Hin1II CATG 7 cut(s) 64, 202, 265, 445, 464, 598, 625
Hin6I GCGC 2 cut(s) 222, 1095
HinP1I GCGC 2 cut(s) 222, 1095
HincII GTYRAC 3 cut(s) 532, 541, 631
HindII GTYRAC 3 cut(s) 532, 541, 631
HinfI GANTC 4 cut(s) 150, 166, 243, 417
HpaI GTTAAC 3 cut(s) 532, 541, 631
HpaII CCGG 5 cut(s) 108, 414, 639, 785, 799
HphI GGTGA 3 cut(s) 118, 153, 403
Hpy166II GTNNAC 6 cut(s) 532, 541, 631, 655, 1222, 1319
Hpy188III TCNNGA 4 cut(s) 77, 674, 944, 1247
Hpy8I GTNNAC 6 cut(s) 532, 541, 631, 655, 1222, 1319
Hpy99I CGWCG 8 cut(s) 140, 311, 515, 902, 940, 1009, 1052, 1114
HpyAV CCTTC 2 cut(s) 925, 1276
HpyCH4III ACNGT 4 cut(s) 49, 691, 902, 1025
HpyCH4IV ACGT 5 cut(s) 228, 627, 695, 938, 1007
HpyCH4V TGCA 3 cut(s) 1122, 1230, 1254
HpyF10VI GCNNNNNNNGC 2 cut(s) 1053, 1128
HpyF3I CTNAG 5 cut(s) 5, 360, 754, 884, 1236
HpySE526I ACGT 5 cut(s) 228, 627, 695, 938, 1007
Hsp92I GRCGYC 2 cut(s) 288, 408
Hsp92II CATG 7 cut(s) 64, 202, 265, 445, 464, 598, 625
HspAI GCGC 2 cut(s) 222, 1095
KpnI GGTACC 1 cut(s) 690
KspAI GTTAAC 3 cut(s) 532, 541, 631
KspI CCGCGG 1 cut(s) 685
Kzo9I GATC 6 cut(s) 279, 487, 670, 893, 1033, 1243
LmnI GCTCC 4 cut(s) 581, 730, 1102, 1309
LpnPI CCDG 9 cut(s) 121, 206, 268, 427, 652, 798, 812, 942, 1167
Lsp1109I GCAGC 1 cut(s) 1134
LweI GCATC 1 cut(s) 1321
MaeI CTAG 1 cut(s) 219
MaeII ACGT 5 cut(s) 228, 627, 695, 938, 1007
MaeIII GTNAC 8 cut(s) 143, 257, 409, 691, 703, 801, 1025, 1265
MalI GATC 6 cut(s) 281, 489, 672, 895, 1035, 1245
MboI GATC 6 cut(s) 279, 487, 670, 893, 1033, 1243
MboII GAAGA 5 cut(s) 169, 961, 965, 1301, 1335
MflI RGATCY 2 cut(s) 279, 893
MhlI GDGCHC 3 cut(s) 99, 357, 1058
MluCI AATT 7 cut(s) 86, 172, 183, 467, 721, 976, 1147
MluI ACGCGT 1 cut(s) 272
MlyI GAGTC 1 cut(s) 252
MmeI TCCRAC 5 cut(s) 226, 257, 289, 582, 921
MroXI GAANNNNTTC 2 cut(s) 86, 176
MseI TTAA 9 cut(s) 365, 531, 540, 617, 630, 725, 842, 848, 1194
MspA1I CMGCKG 2 cut(s) 684, 1125
MspI CCGG 5 cut(s) 108, 414, 639, 785, 799
MspR9I CCNGG 3 cut(s) 108, 785, 786
MvnI CGCG 4 cut(s) 140, 274, 684, 935
MwoI GCNNNNNNNGC 2 cut(s) 1053, 1128
NciI CCSGG 3 cut(s) 108, 785, 786
NdeII GATC 6 cut(s) 279, 487, 670, 893, 1033, 1243
NlaIII CATG 7 cut(s) 64, 202, 265, 445, 464, 598, 625
NlaIV GGNNCC 5 cut(s) 577, 688, 732, 895, 1055
NmuCI GTSAC 3 cut(s) 257, 409, 691
PceI AGGCCT 1 cut(s) 914
PcsI WCGNNNNNNNCGW 1 cut(s) 1029
PdmI GAANNNNTTC 2 cut(s) 86, 176
PfeI GAWTC 3 cut(s) 150, 166, 417
PinAI ACCGGT 1 cut(s) 638
PkrI GCNGC 3 cut(s) 934, 1016, 1124
Ple19I CGATCG 2 cut(s) 1036, 1246
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Ppu21I YACGTR 1 cut(s) 229
PspN4I GGNNCC 5 cut(s) 577, 688, 732, 895, 1055
PspPI GGNCC 4 cut(s) 64, 584, 1184, 1208
PsuI RGATCY 2 cut(s) 279, 893
PvuI CGATCG 2 cut(s) 1036, 1246
RsaI GTAC 7 cut(s) 134, 559, 590, 626, 643, 688, 1318
RsaNI GTAC 7 cut(s) 133, 558, 589, 625, 642, 687, 1317
SacII CCGCGG 1 cut(s) 685
SaqAI TTAA 9 cut(s) 365, 531, 540, 617, 630, 725, 842, 848, 1194
SatI GCNGC 3 cut(s) 933, 1015, 1123
Sau3AI GATC 6 cut(s) 279, 487, 670, 893, 1033, 1243
Sau96I GGNCC 4 cut(s) 64, 584, 1184, 1208
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 3 cut(s) 108, 785, 786
SduI GDGCHC 3 cut(s) 99, 357, 1058
SfaNI GCATC 1 cut(s) 1321
Sfr303I CCGCGG 1 cut(s) 685
SgrBI CCGCGG 1 cut(s) 685
SinI GGWCC 1 cut(s) 584
SmaI CCCGGG 1 cut(s) 786
SmlI CTYRAG 1 cut(s) 908
SmoI CTYRAG 1 cut(s) 908
Sse9I AATT 7 cut(s) 86, 172, 183, 467, 721, 976, 1147
SseBI AGGCCT 1 cut(s) 914
SspI AATATT 1 cut(s) 1364
SspMI CTAG 1 cut(s) 219
StuI AGGCCT 1 cut(s) 914
StyD4I CCNGG 3 cut(s) 106, 783, 784
TaaI ACNGT 4 cut(s) 49, 691, 902, 1025
TaiI ACGT 5 cut(s) 231, 630, 698, 941, 1010
TaqI TCGA 4 cut(s) 486, 717, 945, 1036
TasI AATT 7 cut(s) 86, 172, 183, 467, 721, 976, 1147
TauI GCSGC 2 cut(s) 935, 1017
TfiI GAWTC 3 cut(s) 150, 166, 417
Tru1I TTAA 9 cut(s) 365, 531, 540, 617, 630, 725, 842, 848, 1194
Tru9I TTAA 9 cut(s) 365, 531, 540, 617, 630, 725, 842, 848, 1194
TseFI GTSAC 3 cut(s) 257, 409, 691
TseI GCWGC 1 cut(s) 1122
Tsp45I GTSAC 3 cut(s) 257, 409, 691
TspDTI ATGAA 1 cut(s) 584
TspGWI ACGGA 7 cut(s) 357, 549, 576, 683, 743, 977, 1336
TspMI CCCGGG 1 cut(s) 784
VpaK11BI GGWCC 1 cut(s) 584
XapI RAATTY 2 cut(s) 172, 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XmaI CCCGGG 1 cut(s) 784
XmnI GAANNNNTTC 2 cut(s) 86, 176
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.