Rorug05G0122300

Epidermis-specific secreted glycoprotein EP1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
10811623 .. 10818973
7351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0122300.1

Sequence Viewer

Length: 2475 bp
ATGCAGCAGCCTAGTTCCCTTGAAGCTGTTGCAGGACATGATAGAATAGCAGAATCTTTGGTCAACTTAAGAGGGACTACTAACGAGGAATTCAAGAAGCTCAAAAAAGAAATTGATAGCATAAGGGGGCGTAGTTCAATGAAGAGGATTAGTTCCAGTTCTGGTTTGGACATACTGCAAGATAAAGTATCTGACATGTGGGACGTGGATGGAACCTTGGATGGCCTAAAGACTACAATAGAAACTGCCTATCAACAGGTGGAAAAAATGGTTCACTTGTCAAAGGCATCATCAGTATATGAATGGCAGCTGGAGCAGGAGTTTAGAGCAAAAATTGAAGCGCTTGTGATGAGGAATTGTATTTGGAGCGTTGAAGGAAACATGTCGGATTGCTTTTATAGTGCAAAAAATGTGAACTGGCATGGAAGGAAGAAGGAGATATCAGGTATACGCGATGAATTAGATGCTATTTCTAAATCACTATCTGTTTGTGACAATGGACAGCTATCTTCACATGGATCCTTGGAAGTTGAAGAAGAGAGTAGTAGTGGTAATAAGGGTGCCGGTTCACACCTCAAGGTATTGAACAATCTTAAATCATCATCATCGTTACCATCAACAATAACAACAGCAACAACATCATCATCATCAGCATCATCATCTTCATCTGTTCGGGAAGAAAATGGTATACATGATGAGTCAGAAAAAAATATGGAAGAAGATTTGGATCCTGCCTTGCTTAAGCATATTAAGAAAGGAGAATTGATAAGCCATTTTAAGAATGAGATTACTAAATTGAAGAGAAATCATGAGTCAAAAATACTCGTTCTGACTGAGCAGCATTTCGGCTACAAGAGGGAATTGCCGAGAGAAAGGAGATTCTCTTTAACATTGAAGTCTAAGGAGTTCGATATGTTGAGAAAGAGAATCTCTGAGGTGATTTCTAAACTAGATGAAATTCTTGTAGAAAAGGAGGAAGTAGCTACATTGCTTCCTCATACATTTGGCAGCAATGAAGAAAGTCCCAGCAGTTTGAAAGATAGAGTGGAATCACTCCTCTCAGAAAACCACCAACTCAGAGATCTGCTTGAAGATAAGAATAGAGAAATTAAGTGCCTTTCACTACACGTTTCTGAAGCTGCAGAGTGCCTGTCACAACACTCTCTGGCTGAGGCAAAGTTATTGAAAACAGCTGGAAATCTTAAAGCAGCTATGGAAGATGCGTGTATCGAATCTTCAATTGGTGCAGATTTACTTGCTGGTATTGTCAGGGAAGTGGTGGATGAGATTAAATGCATTGCTGAAGAGTCACAGTTGGAGAATAGTATTATGAATGAAGATTTGAATATGGAGTCCATCATCACGCAAGAACTATGTGGTGTTATGTTCAAAGATGATGAGGAGAAACTCAGTGAGCTGAACATTAAATATATTGAGGAATATGAACTTTGGGTTTTGCAGGAGATGGACAAACGAGAAAAGGAAAAACAATTAGAAGTGGAGCTTGCAAACAAAGTGAGCTTACAGAAAGAAGTACATTTTCTGGTAGAAGAAAAGGAGCAGTTGGCACGAGATGCAGCAGCTGCATTGGAAATCGAAAAAGAAAGATATGAATCAGCTGCTCAAGAGGTTGAAAATTTAAGGGGTGAGACGAGTCAACATCAGAAATTGATTTCAGAAAGCGTTGAAGAGTCAAATGCTGCAAAGCGTGATTTGGCTGAGGCGTTGGAGCAAAATGAAGAAAAGGAGCAGTTGGCGCGAAATGCAGCAGCTGCATTGGCAATCGAAAAAGAAAGATATGAATTGGCTGCTCAAGAGGTTGAAAATTTAAGGGGTGAGATATGTCAACATCAGAAATTGATTTCAGAAAGCGTTGAAGAGTCTAATGCTGCAAAGCTTGATTTGGCTGAGGCGTTGGAGCAAAATGAAACACACAAGGCAGACATATGTAAGTTAGAACAAAAGCTTGAAGCAGCAGTGAAAGTGCTGTGGCAAGTTGAGGAAGATAGAAGGAGGCTTCTTGATGTCAACCAAGAGAAGCAGATTGCTGTAACTTTGTTCGAAGCAAAAGAAAGGGAGCTTAGCGAGCAACTTAAATCAATAGCTGTCTATATCAGTGGATTATTGAAAACGTTCACTTATTTTGAACGTAGAGTGACACAAGATATTTCAGGGAAATGTTCGAGGTTGAAAAGTTTGACTTCTCAATCACGTTCGCTTAAACGAAAAGCTGCTGTACTTGTAAGACGAGGATTGCTGTACAAGTGCAGACTGGAAAAGAAATGTTCTGACCTTCAGAGAGCTGAAGCTGAGGTCGATCTTTTGGGGGCTAAGGTGGACACTCAGTTGAATCTTCTTGAAAAAATATGCATTGCCCTTGATCATTATTCACCAATATTGCAGCATTATCCTGGAATAACTGATATCTTGGAGCTGTTAAGAAGGGAATTAAGTGCAGAAATTAGATCTGTTTGA

Protein Analysis

824

Amino Acids

93.24

Weight (kDa)

5.2

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 560
AccI GTMKAC 2 cut(s) 448, 688
AccII CGCG 2 cut(s) 453, 1759
AclI AACGTT 1 cut(s) 2132
AclWI GGATC 4 cut(s) 513, 526, 722, 735
AcsI RAATTY 4 cut(s) 89, 957, 1636, 1825
AcuI CTGAAG 4 cut(s) 1155, 1323, 2279, 2325
AfaI GTAC 3 cut(s) 1536, 2238, 2261
AfeI AGCGCT 1 cut(s) 342
AflII CTTAAG 2 cut(s) 67, 740
AflIII ACRYGT 3 cut(s) 195, 381, 1126
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 1 cut(s) 2410
AjuI GAANNNNNNNTTGG 2 cut(s) 1224, 1256
Alw26I GTCTC 1 cut(s) 1643
AlwI GGATC 4 cut(s) 513, 526, 722, 735
AlwNI CAGNNNCTG 2 cut(s) 1583, 1772
Aor51HI AGCGCT 1 cut(s) 342
AoxI GGCC 1 cut(s) 223
ApoI RAATTY 4 cut(s) 89, 957, 1636, 1825
Asp700I GAANNNNTTC 1 cut(s) 2132
AspLEI GCGC 2 cut(s) 343, 1759
AsuHPI GGTGA 4 cut(s) 949, 1658, 1847, 2382
AsuII TTCGAA 1 cut(s) 2061
BamHI GGATCC 2 cut(s) 518, 727
BanI GGYRCC 1 cut(s) 560
BarI GAAGNNNNNNTAC 2 cut(s) 1219, 1251
BauI CACGAG 1 cut(s) 1569
BbvCI CCTCAGC 4 cut(s) 1170, 1719, 1908, 2310
BccI CCATC 5 cut(s) 203, 215, 622, 1364, 1459
BciT130I CCWGG 1 cut(s) 2412
BclI TGATCA 1 cut(s) 2380
BcoDI GTCTC 1 cut(s) 1643
BfaI CTAG 2 cut(s) 12, 950
BfmI CTRYAG 1 cut(s) 1140
BfoI RGCGCY 1 cut(s) 344
BfrI CTTAAG 2 cut(s) 67, 740
BglII AGATCT 2 cut(s) 1081, 2465
BlpI GCTNAGC 1 cut(s) 2081
Bme1390I CCNGG 1 cut(s) 2412
BmgBI CACGTC 1 cut(s) 205
BmiI GGNNCC 4 cut(s) 214, 520, 562, 729
BmrFI CCNGG 1 cut(s) 2412
BmsI GCATC 5 cut(s) 296, 454, 662, 1210, 1564
BpmI CTGGAG 1 cut(s) 332
Bpu10I CCTNAGC 5 cut(s) 1170, 1719, 1908, 2310, 2331
Bpu1102I GCTNAGC 1 cut(s) 2081
Bpu14I TTCGAA 1 cut(s) 2061
BpuEI CTTGAG 3 cut(s) 560, 1608, 1797
BsaBI GATNNNNATC 2 cut(s) 726, 1612
BsaJI CCNNGG 2 cut(s) 216, 522
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bse118I RCCGGY 1 cut(s) 563
Bse1I ACTGG 3 cut(s) 156, 422, 2277
Bse3DI GCAATG 4 cut(s) 986, 1018, 1296, 2370
Bse8I GATNNNNATC 2 cut(s) 726, 1612
BseBI CCWGG 1 cut(s) 2412
BseDI CCNNGG 2 cut(s) 216, 522
BseGI GGATG 3 cut(s) 214, 226, 1288
BseJI GATNNNNATC 2 cut(s) 726, 1612
BseMI GCAATG 4 cut(s) 986, 1018, 1296, 2370
BseNI ACTGG 3 cut(s) 156, 422, 2277
BseRI GAGGAG 2 cut(s) 1046, 1415
BseYI CCCAGC 1 cut(s) 1025
BsgI GTGCAG 3 cut(s) 1266, 2287, 2475
Bsh1236I CGCG 2 cut(s) 453, 1759
BshFI GGCC 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 560
BsiSI CCGG 1 cut(s) 564
BslFI GGGAC 3 cut(s) 88, 215, 1008
BsmAI GTCTC 1 cut(s) 1643
BsmBI CGTCTC 1 cut(s) 1643
BsmFI GGGAC 3 cut(s) 88, 215, 1008
BsnI GGCC 1 cut(s) 225
Bsp119I TTCGAA 1 cut(s) 2061
Bsp1407I TGTACA 1 cut(s) 2259
Bsp143I GATC 6 cut(s) 518, 727, 1081, 2317, 2380, 2465
Bsp1720I GCTNAGC 1 cut(s) 2081
BspANI GGCC 1 cut(s) 225
BspFNI CGCG 2 cut(s) 453, 1759
BspHI TCATGA 1 cut(s) 808
BspLI GGNNCC 4 cut(s) 214, 520, 562, 729
BspMAI CTGCAG 1 cut(s) 1144
BspPI GGATC 4 cut(s) 513, 526, 722, 735
BspT104I TTCGAA 1 cut(s) 2061
BspT107I GGYRCC 1 cut(s) 560
BspTI CTTAAG 2 cut(s) 67, 740
BsrDI GCAATG 4 cut(s) 986, 1018, 1296, 2370
BsrFI RCCGGY 1 cut(s) 563
BsrGI TGTACA 1 cut(s) 2259
BsrI ACTGG 3 cut(s) 156, 422, 2277
BssAI RCCGGY 1 cut(s) 563
BssECI CCNNGG 2 cut(s) 216, 522
BssMI GATC 6 cut(s) 518, 727, 1081, 2317, 2380, 2465
BssNAI GTATAC 2 cut(s) 449, 689
BssSI CACGAG 1 cut(s) 1569
BssT1I CCWWGG 2 cut(s) 216, 522
Bst1107I GTATAC 2 cut(s) 449, 689
Bst2BI CACGAG 1 cut(s) 1569
Bst2UI CCWGG 1 cut(s) 2412
Bst4CI ACNGT 1 cut(s) 1314
Bst6I CTCTTC 6 cut(s) 137, 531, 794, 1299, 1683, 1872
BstAFI CTTAAG 2 cut(s) 67, 740
BstAPI GCANNNNNTGC 3 cut(s) 1574, 1583, 1772
BstAUI TGTACA 1 cut(s) 2259
BstBI TTCGAA 1 cut(s) 2061
BstC8I GCNNGC 2 cut(s) 1506, 2087
BstF5I GGATG 3 cut(s) 214, 226, 1288
BstFNI CGCG 2 cut(s) 453, 1759
BstH2I RGCGCY 1 cut(s) 344
BstHHI GCGC 2 cut(s) 343, 1759
BstKTI GATC 6 cut(s) 521, 730, 1084, 2320, 2383, 2468
BstMAI GTCTC 1 cut(s) 1643
BstMBI GATC 6 cut(s) 518, 727, 1081, 2317, 2380, 2465
BstMWI GCNNNNNNNGC 8 cut(s) 313, 1574, 1583, 1756, 1763, 1772, 1778, 2086
BstNI CCWGG 1 cut(s) 2412
BstNSI RCATGY 2 cut(s) 199, 385
BstSCI CCNGG 1 cut(s) 2410
BstSFI CTRYAG 1 cut(s) 1140
BstUI CGCG 2 cut(s) 453, 1759
BstX2I RGATCY 4 cut(s) 518, 727, 1081, 2465
BstYI RGATCY 4 cut(s) 518, 727, 1081, 2465
BstZ17I GTATAC 2 cut(s) 449, 689
BsuRI GGCC 1 cut(s) 225
BtgZI GCGATG 1 cut(s) 468
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 3 cut(s) 214, 226, 1288
BtsI GCAGTG 1 cut(s) 1983
BtsIMutI CAGTG 3 cut(s) 1417, 1983, 2122
Cac8I GCNNGC 2 cut(s) 1506, 2087
CaiI CAGNNNCTG 2 cut(s) 1583, 1772
CciI TCATGA 1 cut(s) 808
CfoI GCGC 2 cut(s) 343, 1759
Cfr10I RCCGGY 1 cut(s) 563
Csp6I GTAC 3 cut(s) 1535, 2237, 2260
CviAII CATG 7 cut(s) 38, 196, 382, 422, 515, 692, 809
CviQI GTAC 3 cut(s) 1535, 2237, 2260
DpnI GATC 6 cut(s) 520, 729, 1083, 2319, 2382, 2467
DpnII GATC 6 cut(s) 518, 727, 1081, 2317, 2380, 2465
Eam1104I CTCTTC 6 cut(s) 137, 531, 794, 1299, 1683, 1872
EarI CTCTTC 6 cut(s) 137, 531, 794, 1299, 1683, 1872
Eco130I CCWWGG 2 cut(s) 216, 522
Eco32I GATATC 2 cut(s) 441, 2425
Eco47III AGCGCT 1 cut(s) 342
Eco57I CTGAAG 4 cut(s) 1155, 1323, 2279, 2325
EcoRI GAATTC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 2410
EcoRV GATATC 2 cut(s) 441, 2425
EcoT14I CCWWGG 2 cut(s) 216, 522
EcoT22I ATGCAT 2 cut(s) 1298, 2372
ErhI CCWWGG 2 cut(s) 216, 522
Esp3I CGTCTC 1 cut(s) 1643
FaeI CATG 7 cut(s) 41, 199, 385, 425, 518, 695, 812
FalI AAGNNNNNCTT 4 cut(s) 1488, 1520, 2185, 2217
FaqI GGGAC 3 cut(s) 88, 215, 1008
FatI CATG 7 cut(s) 37, 195, 381, 421, 514, 691, 808
FauNDI CATATG 1 cut(s) 1946
FbaI TGATCA 1 cut(s) 2380
FblI GTMKAC 2 cut(s) 448, 688
FokI GGATG 3 cut(s) 221, 233, 1295
FspBI CTAG 2 cut(s) 12, 950
GlaI GCGC 2 cut(s) 342, 1758
GsaI CCCAGC 1 cut(s) 1029
GsuI CTGGAG 1 cut(s) 332
HaeII RGCGCY 1 cut(s) 344
HaeIII GGCC 1 cut(s) 225
HapII CCGG 1 cut(s) 564
HhaI GCGC 2 cut(s) 343, 1759
Hin1II CATG 7 cut(s) 41, 199, 385, 425, 518, 695, 812
Hin6I GCGC 2 cut(s) 341, 1757
HinP1I GCGC 2 cut(s) 341, 1757
HincII GTYRAC 4 cut(s) 64, 1658, 1847, 2029
HindII GTYRAC 4 cut(s) 64, 1658, 1847, 2029
HindIII AAGCTT 2 cut(s) 1895, 1964
HpaII CCGG 1 cut(s) 564
HphI GGTGA 4 cut(s) 949, 1658, 1847, 2382
Hpy188III TCNNGA 7 cut(s) 94, 674, 809, 1625, 1814, 2021, 2357
HpyAV CCTTC 6 cut(s) 368, 420, 427, 2004, 2303, 2436
HpyCH4III ACNGT 1 cut(s) 1314
HpyCH4IV ACGT 5 cut(s) 204, 1128, 2132, 2149, 2212
HpyF10VI GCNNNNNNNGC 8 cut(s) 313, 1574, 1583, 1756, 1763, 1772, 1778, 2086
HpySE526I ACGT 5 cut(s) 204, 1128, 2132, 2149, 2212
Hsp92II CATG 7 cut(s) 41, 199, 385, 425, 518, 695, 812
HspAI GCGC 2 cut(s) 341, 1757
Ksp22I TGATCA 1 cut(s) 2380
Kzo9I GATC 6 cut(s) 518, 727, 1081, 2317, 2380, 2465
LmnI GCTCC 9 cut(s) 313, 366, 1501, 1558, 1729, 1747, 1918, 2077, 2431
LweI GCATC 5 cut(s) 296, 454, 662, 1210, 1564
MaeI CTAG 2 cut(s) 12, 950
MaeII ACGT 5 cut(s) 204, 1128, 2132, 2149, 2212
MaeIII GTNAC 6 cut(s) 491, 609, 1152, 1308, 2050, 2155
MalI GATC 6 cut(s) 520, 729, 1083, 2319, 2382, 2467
MboI GATC 6 cut(s) 518, 727, 1081, 2317, 2380, 2465
MfeI CAATTG 1 cut(s) 1239
MflI RGATCY 4 cut(s) 518, 727, 1081, 2465
MlyI GAGTC 7 cut(s) 707, 821, 1316, 1361, 1663, 1700, 1889
MmeI TCCRAC 4 cut(s) 366, 1296, 1707, 1896
Mph1103I ATGCAT 2 cut(s) 1298, 2372
MroXI GAANNNNTTC 1 cut(s) 2132
MspA1I CMGCKG 5 cut(s) 310, 1193, 1583, 1619, 1772
MspCI CTTAAG 2 cut(s) 67, 740
MspI CCGG 1 cut(s) 564
MspR9I CCNGG 1 cut(s) 2412
MunI CAATTG 1 cut(s) 1239
MvaI CCWGG 1 cut(s) 2412
MvnI CGCG 2 cut(s) 453, 1759
MwoI GCNNNNNNNGC 8 cut(s) 313, 1574, 1583, 1756, 1763, 1772, 1778, 2086
NdeI CATATG 1 cut(s) 1946
NdeII GATC 6 cut(s) 518, 727, 1081, 2317, 2380, 2465
NlaIII CATG 7 cut(s) 41, 199, 385, 425, 518, 695, 812
NlaIV GGNNCC 4 cut(s) 214, 520, 562, 729
NmeAIII GCCGAG 1 cut(s) 891
NmuCI GTSAC 4 cut(s) 491, 1152, 1308, 2155
NsiI ATGCAT 2 cut(s) 1298, 2372
NspI RCATGY 2 cut(s) 199, 385
NspV TTCGAA 1 cut(s) 2061
PagI TCATGA 1 cut(s) 808
PciI ACATGT 2 cut(s) 195, 381
PdmI GAANNNNTTC 1 cut(s) 2132
PfeI GAWTC 7 cut(s) 53, 879, 927, 1049, 1232, 1613, 2350
PfoI TCCNGGA 1 cut(s) 2410
PleI GAGTC 7 cut(s) 706, 820, 1315, 1360, 1662, 1699, 1888
PpsI GAGTC 7 cut(s) 706, 820, 1315, 1360, 1662, 1699, 1888
PscI ACATGT 2 cut(s) 195, 381
Psp1406I AACGTT 1 cut(s) 2132
Psp6I CCWGG 1 cut(s) 2410
PspFI CCCAGC 1 cut(s) 1025
PspGI CCWGG 1 cut(s) 2410
PspN4I GGNNCC 4 cut(s) 214, 520, 562, 729
PstI CTGCAG 1 cut(s) 1144
PstNI CAGNNNCTG 2 cut(s) 1583, 1772
PsuI RGATCY 4 cut(s) 518, 727, 1081, 2465
PvuII CAGCTG 5 cut(s) 310, 1193, 1583, 1619, 1772
RsaI GTAC 3 cut(s) 1536, 2238, 2261
RsaNI GTAC 3 cut(s) 1535, 2237, 2260
Sau3AI GATC 6 cut(s) 518, 727, 1081, 2317, 2380, 2465
SchI GAGTC 7 cut(s) 707, 821, 1316, 1361, 1663, 1700, 1889
ScrFI CCNGG 1 cut(s) 2412
SfaNI GCATC 5 cut(s) 296, 454, 662, 1210, 1564
SfcI CTRYAG 1 cut(s) 1140
SfuI TTCGAA 1 cut(s) 2061
SmlI CTYRAG 5 cut(s) 67, 575, 740, 1623, 1812
SmoI CTYRAG 5 cut(s) 67, 575, 740, 1623, 1812
SspI AATATT 1 cut(s) 2397
SspMI CTAG 2 cut(s) 12, 950
StyD4I CCNGG 1 cut(s) 2410
StyI CCWWGG 2 cut(s) 216, 522
TaaI ACNGT 1 cut(s) 1314
TaiI ACGT 5 cut(s) 207, 1131, 2135, 2152, 2215
TaqI TCGA 7 cut(s) 909, 1230, 1596, 1785, 2061, 2183, 2316
TatI WGTACW 3 cut(s) 1534, 2236, 2259
TfiI GAWTC 7 cut(s) 53, 879, 927, 1049, 1232, 1613, 2350
TscAI CASTG 3 cut(s) 1417, 1983, 2122
TseFI GTSAC 4 cut(s) 491, 1152, 1308, 2155
Tsp45I GTSAC 4 cut(s) 491, 1152, 1308, 2155
TspRI CASTG 3 cut(s) 1417, 1983, 2122
Vha464I CTTAAG 2 cut(s) 67, 740
XapI RAATTY 4 cut(s) 89, 957, 1636, 1825
XceI RCATGY 2 cut(s) 199, 385
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XmiI GTMKAC 2 cut(s) 448, 688
XmnI GAANNNNTTC 1 cut(s) 2132
XspI CTAG 2 cut(s) 12, 950
Zsp2I ATGCAT 2 cut(s) 1298, 2372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.