Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Forward (+)

24687096 .. 24687801

Gene Structure 706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31038

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTCTTCCCCTACCTTCATAATGCCATTAATGCTCTCCTTGTTTCTTCTCTCACTCATTGCTTCCATTGCTCAAGCTCAAGTTCCTGCAGATCGAACTTTCAAGCTTGTCAATGAGGGAGATGATGGGGTTAATACGGTTGAATACTGGGCATGCTATCGTATGCTGTTTCAGCTCTATGCTAGGTCCGCAGTGTTTGACGAGTTCGGATACTGTCATGCCTTGGGTTTGGGAGGCCAACCGGGGAAATCCGGTTGGCTAAAATGCCACCTTCTCGTTGGGGACCGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

97

Amino Acids

10.76

Weight (kDa)

6.01

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	189
AgsI	TTSAA	2 cut(s)	103, 143
AluBI	AGCT	3 cut(s)	77, 106, 175
AluI	AGCT	3 cut(s)	77, 106, 175
AoxI	GGCC	1 cut(s)	235
AseI	ATTAAT	1 cut(s)	29
AspS9I	GGNCC	2 cut(s)	186, 283
AsuC2I	CCSGG	1 cut(s)	243
AvaII	GGWCC	2 cut(s)	186, 283
BccI	CCATC	1 cut(s)	119
BciVI	GTATCC	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	243
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	87
BfuI	GTATCC	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	2 cut(s)	186, 283
BmgT120I	GGNCC	2 cut(s)	186, 283
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	243
BmrI	ACTGGG	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	157
BpuEI	CTTGAG	2 cut(s)	57, 63
BpuMI	CCSGG	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	222, 242
BsaWI	WCCGGW	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	2 cut(s)	57, 66
BseDI	CCNNGG	2 cut(s)	222, 242
BseMI	GCAATG	2 cut(s)	57, 66
BseNI	ACTGG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	242, 252
BsnI	GGCC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	284
BspMAI	CTGCAG	1 cut(s)	91
BsrDI	GCAATG	2 cut(s)	57, 66
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	222, 242
BssMI	GATC	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	139, 215
BstC8I	GCNNGC	1 cut(s)	154
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 68, 172, 188
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	87
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	237
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	186, 283
CviAII	CATG	2 cut(s)	153, 218
CviJI	RGCY	5 cut(s)	77, 106, 175, 237, 259
CviKI_1	RGCY	5 cut(s)	77, 106, 175, 237, 259
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	222
Eco47I	GGWCC	2 cut(s)	186, 283
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	2 cut(s)	156, 221
FaiI	YATR	5 cut(s)	20, 154, 164, 180, 219
FatI	CATG	2 cut(s)	152, 217
FspBI	CTAG	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	2 cut(s)	242, 252
Hin1II	CATG	2 cut(s)	156, 221
HindIII	AAGCTT	1 cut(s)	104
HpaII	CCGG	2 cut(s)	242, 252
Hpy188I	TCNGA	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	25, 281
HpyCH4III	ACNGT	2 cut(s)	139, 215
HpyCH4V	TGCA	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 68, 172, 188
Hsp92II	CATG	2 cut(s)	156, 221
Kzo9I	GATC	1 cut(s)	91
LpnPI	CCDG	4 cut(s)	99, 133, 255, 265
MaeI	CTAG	1 cut(s)	183
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	1 cut(s)	38
MnlI	CCTC	2 cut(s)	109, 227
MseI	TTAA	2 cut(s)	29, 132
MspI	CCGG	2 cut(s)	242, 252
MspR9I	CCNGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	4 cut(s)	31, 68, 172, 188
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	2 cut(s)	156, 221
NlaIV	GGNNCC	1 cut(s)	284
NspI	RCATGY	1 cut(s)	156
PaeI	GCATGC	1 cut(s)	156
PshBI	ATTAAT	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	2 cut(s)	186, 283
PstI	CTGCAG	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	29, 132
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	2 cut(s)	186, 283
ScrFI	CCNGG	1 cut(s)	243
SetI	ASST	6 cut(s)	17, 79, 108, 177, 188, 273
SfcI	CTRYAG	1 cut(s)	87
SinI	GGWCC	2 cut(s)	186, 283
SmlI	CTYRAG	2 cut(s)	72, 78
SmoI	CTYRAG	2 cut(s)	72, 78
SphI	GCATGC	1 cut(s)	156
SsiI	CCGC	1 cut(s)	189
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	241
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	139, 215
TaqI	TCGA	1 cut(s)	94
Tru1I	TTAA	2 cut(s)	29, 132
Tru9I	TTAA	2 cut(s)	29, 132
TscAI	CASTG	1 cut(s)	198
TspDTI	ATGAA	1 cut(s)	7
TspRI	CASTG	1 cut(s)	198
VpaK11BI	GGWCC	2 cut(s)	186, 283
VspI	ATTAAT	1 cut(s)	29
XceI	RCATGY	1 cut(s)	156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.