Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Reverse (-)

69357810 .. 69358672

Gene Structure 863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00049170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCTTCCCCTGCCTTCATAATGCCATTGCTCTCCTTGTTTCTTCTCTCACTCATTGCTTCCATTGCTCAAGCTCAAGTTCCCGCAGTTCGAACTTTGCAGCTTGTCAATGAGGTAGATGATGGGGTTAATACGGTTGAATACCGGGCACGCTATCGTATGATGTTTCAGCTCTTTAACTCCCCTTTCCAACTTGGCTTCTGCTACAACACCCCTAATGCCTTCACTCTTGCACTTCTTATGGGTTTGACAAGTTCGGATACTGTCATGCCTTGGGTTTGGGAGGCCAACGGGGAACCGCGGGGGAGACACGGTGTCAAGCTTTCCACTACCCCTGGTGCTGGCCTTCATGGGAAACTAAGTGAACTTTTCCTGGTCACCCGCAGGGACCTAGGGGGCCGGCATGTGTCGTCGAAAGGGGCAGCATATGTTTCTACGAGTCGGGATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

150

Amino Acids

16.45

Weight (kDa)

9.35

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	301
AciI	CCGC	4 cut(s)	84, 299, 301, 382
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	140
AhdI	GACNNNNNGTC	1 cut(s)	314
AjnI	CCWGG	2 cut(s)	334, 372
AluBI	AGCT	4 cut(s)	74, 103, 172, 322
AluI	AGCT	4 cut(s)	74, 103, 172, 322
Alw26I	GTCTC	1 cut(s)	301
AoxI	GGCC	3 cut(s)	285, 343, 397
ApeKI	GCWGC	2 cut(s)	100, 422
AspA2I	CCTAGG	1 cut(s)	391
AspS9I	GGNCC	2 cut(s)	388, 397
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	370
AsuII	TTCGAA	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	388
AvrII	CCTAGG	1 cut(s)	391
BaeGI	GKGCMC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	112, 434
BccI	CCATC	1 cut(s)	116
BciT130I	CCWGG	2 cut(s)	336, 374
BciVI	GTATCC	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	2 cut(s)	392, 451
BfuI	GTATCC	1 cut(s)	253
BisI	GCNGC	2 cut(s)	101, 423
BlnI	CCTAGG	1 cut(s)	391
BlsI	GCNGC	2 cut(s)	102, 424
Bme1390I	CCNGG	3 cut(s)	146, 336, 374
Bme18I	GGWCC	1 cut(s)	388
BmeRI	GACNNNNNGTC	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	388, 397
BmiI	GGNNCC	3 cut(s)	297, 389, 398
BmrFI	CCNGG	3 cut(s)	146, 336, 374
Bpu14I	TTCGAA	1 cut(s)	91
BpuEI	CTTGAG	2 cut(s)	54, 60
BpuMI	CCSGG	1 cut(s)	146
BsaJI	CCNNGG	4 cut(s)	272, 299, 334, 391
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse118I	RCCGGY	1 cut(s)	399
Bse3DI	GCAATG	3 cut(s)	26, 54, 63
BseBI	CCWGG	2 cut(s)	336, 374
BseDI	CCNNGG	4 cut(s)	272, 299, 334, 391
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMI	GCAATG	3 cut(s)	26, 54, 63
BseSI	GKGCMC	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	112, 434
Bsh1236I	CGCG	1 cut(s)	301
BshFI	GGCC	3 cut(s)	287, 345, 399
BsiSI	CCGG	2 cut(s)	145, 400
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	3 cut(s)	287, 345, 399
Bsp119I	TTCGAA	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	151
BspACI	CCGC	4 cut(s)	84, 299, 301, 382
BspANI	GGCC	3 cut(s)	287, 345, 399
BspFNI	CGCG	1 cut(s)	301
BspLI	GGNNCC	3 cut(s)	297, 389, 398
BspT104I	TTCGAA	1 cut(s)	91
BsrDI	GCAATG	3 cut(s)	26, 54, 63
BsrFI	RCCGGY	1 cut(s)	399
BssAI	RCCGGY	1 cut(s)	399
BssECI	CCNNGG	4 cut(s)	272, 299, 334, 391
BssT1I	CCWWGG	2 cut(s)	272, 391
Bst2UI	CCWGG	2 cut(s)	336, 374
Bst4CI	ACNGT	3 cut(s)	136, 265, 314
BstBI	TTCGAA	1 cut(s)	91
BstC8I	GCNNGC	3 cut(s)	151, 343, 401
BstDEI	CTNAG	1 cut(s)	359
BstDSI	CCRYGG	1 cut(s)	299
BstEII	GGTNACC	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	451
BstFNI	CGCG	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	2 cut(s)	336, 374
BstNSI	RCATGY	1 cut(s)	407
BstPI	GGTNACC	1 cut(s)	376
BstSCI	CCNGG	3 cut(s)	144, 334, 372
BstSLI	GKGCMC	1 cut(s)	151
BstUI	CGCG	1 cut(s)	301
BstV1I	GCAGC	2 cut(s)	112, 434
BsuI	GTATCC	1 cut(s)	253
BsuRI	GGCC	3 cut(s)	287, 345, 399
BtgI	CCRYGG	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	451
Cac8I	GCNNGC	3 cut(s)	151, 343, 401
Cfr10I	RCCGGY	1 cut(s)	399
Cfr13I	GGNCC	2 cut(s)	388, 397
Cfr42I	CCGCGG	1 cut(s)	302
CviAII	CATG	3 cut(s)	268, 350, 404
CviJI	RGCY	8 cut(s)	74, 103, 172, 198, 287, 322, 345, 399
CviKI_1	RGCY	8 cut(s)	74, 103, 172, 198, 287, 322, 345, 399
DdeI	CTNAG	1 cut(s)	359
DriI	GACNNNNNGTC	1 cut(s)	314
Eam1105I	GACNNNNNGTC	1 cut(s)	314
Eco130I	CCWWGG	2 cut(s)	272, 391
Eco47I	GGWCC	1 cut(s)	388
Eco91I	GGTNACC	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	388
EcoO65I	GGTNACC	1 cut(s)	376
EcoRII	CCWGG	2 cut(s)	334, 372
EcoT14I	CCWWGG	2 cut(s)	272, 391
ErhI	CCWWGG	2 cut(s)	272, 391
FaeI	CATG	3 cut(s)	271, 353, 407
FaiI	YATR	8 cut(s)	20, 161, 242, 269, 351, 405, 427, 429
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	3 cut(s)	267, 349, 403
FauI	CCCGC	3 cut(s)	91, 294, 389
FauNDI	CATATG	1 cut(s)	427
Fnu4HI	GCNGC	2 cut(s)	101, 423
Fsp4HI	GCNGC	2 cut(s)	101, 423
FspBI	CTAG	2 cut(s)	392, 451
GluI	GCNGC	2 cut(s)	101, 423
HaeIII	GGCC	3 cut(s)	287, 345, 399
HapII	CCGG	2 cut(s)	145, 400
Hin1II	CATG	3 cut(s)	271, 353, 407
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	1 cut(s)	439
HpaII	CCGG	2 cut(s)	145, 400
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	1 cut(s)	365
Hpy99I	CGWCG	1 cut(s)	415
HpyAV	CCTTC	3 cut(s)	25, 232, 356
HpyCH4III	ACNGT	3 cut(s)	136, 265, 314
HpyCH4V	TGCA	2 cut(s)	100, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	359
Hsp92II	CATG	3 cut(s)	271, 353, 407
KroI	GCCGGC	1 cut(s)	399
KroNI	GCCGGC	1 cut(s)	401
KspI	CCGCGG	1 cut(s)	302
LpnPI	CCDG	9 cut(s)	24, 158, 321, 327, 348, 359, 370, 386, 413
Lsp1109I	GCAGC	2 cut(s)	112, 434
MaeI	CTAG	2 cut(s)	392, 451
MaeIII	GTNAC	1 cut(s)	376
MboII	GAAGA	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	151
MlyI	GAGTC	1 cut(s)	448
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	2 cut(s)	106, 277
MroNI	GCCGGC	1 cut(s)	399
MseI	TTAA	2 cut(s)	129, 177
MspA1I	CMGCKG	1 cut(s)	301
MspI	CCGG	2 cut(s)	145, 400
MspR9I	CCNGG	3 cut(s)	146, 336, 374
MvaI	CCWGG	2 cut(s)	336, 374
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	1 cut(s)	65
NaeI	GCCGGC	1 cut(s)	401
NciI	CCSGG	1 cut(s)	146
NdeI	CATATG	1 cut(s)	427
NgoMIV	GCCGGC	1 cut(s)	399
NlaIII	CATG	3 cut(s)	271, 353, 407
NlaIV	GGNNCC	3 cut(s)	297, 389, 398
NmuCI	GTSAC	1 cut(s)	376
NspI	RCATGY	1 cut(s)	407
NspV	TTCGAA	1 cut(s)	91
PdiI	GCCGGC	1 cut(s)	401
PkrI	GCNGC	2 cut(s)	102, 424
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
PpuMI	RGGWCCY	1 cut(s)	388
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	2 cut(s)	334, 372
PspEI	GGTNACC	1 cut(s)	376
PspGI	CCWGG	2 cut(s)	334, 372
PspN4I	GGNNCC	3 cut(s)	297, 389, 398
PspPI	GGNCC	2 cut(s)	388, 397
PspPPI	RGGWCCY	1 cut(s)	388
SacII	CCGCGG	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	129, 177
SatI	GCNGC	2 cut(s)	101, 423
Sau96I	GGNCC	2 cut(s)	388, 397
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	3 cut(s)	146, 336, 374
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	6 cut(s)	76, 105, 117, 174, 324, 393
Sfr303I	CCGCGG	1 cut(s)	302
SfuI	TTCGAA	1 cut(s)	91
SgrBI	CCGCGG	1 cut(s)	302
SinI	GGWCC	1 cut(s)	388
SmlI	CTYRAG	2 cut(s)	69, 75
SmoI	CTYRAG	2 cut(s)	69, 75
SsiI	CCGC	4 cut(s)	84, 299, 301, 382
SspMI	CTAG	2 cut(s)	392, 451
StyD4I	CCNGG	3 cut(s)	144, 334, 372
StyI	CCWWGG	2 cut(s)	272, 391
TaaI	ACNGT	3 cut(s)	136, 265, 314
TaqI	TCGA	2 cut(s)	91, 413
Tru1I	TTAA	2 cut(s)	129, 177
Tru9I	TTAA	2 cut(s)	129, 177
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	100, 422
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	2 cut(s)	7, 338
VpaK11BI	GGWCC	1 cut(s)	388
XceI	RCATGY	1 cut(s)	407
XmaJI	CCTAGG	1 cut(s)	391
XspI	CTAG	2 cut(s)	392, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.