Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Reverse (-)

32711680 .. 32713002

Gene Structure 1323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1242400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGTCTTCCCCTCAACTAATCATGTCACTACCGTGCATGTTCATTTTCTCACTCTTTGCTTTCATTGCTCAAGCCAAAGTTCCAGCAAATCAAACTTTCAAGTACGTCAATGAAGGGGAATTTGGGCCTTTCATTACAGAATATGATGCAAGCTATCGGATGCTTGATCCTTTTGCCTCCCCCTTCCAACTTGCTTTCTACAACACCACCCCAAATGCCTTCACTCTTGCTCTACGCATGGGTTTGAGGCGGTCGGAGTCGCAGTTTTATTGGGTTTGGGAAGCCAACCGGGGGAAACCTGTCGGCGAAAATGCCACCTTCACATTTGGGACTGATGGGAATCTTGTTTTGGCCAATGCCGATGGCCGAGTGGCTTGGCAAAGCAACACCGCCAACAAAGGTGTCGTAGGCTTCGACTTGCTTTCAACTGGCAATATGGTACTTTATGACTCAAAGGGTAACTTTGTTTGGCAAAGTTTTGACTACCCATCAAACACTTTGTTGGTGGGTCAATCTCTGCGTGCCGGGGGAGTAAGCAAGCTTGTGAGTCGAGCATCGGAGGCAGAAAACGAGGACGGGTCTTATAGCTTGGTGATGGAGGCGAAAGGTTTGGCTATGTACTACAAGAGCAAGAACTCCCCACGACCATCACTTTACTTCACATCTTCCAAATGGATTAGTGTCCAAAAGGGCTCATTGAACCATGTGACATTGAAATGTTCACCAGATGCTCATGAGGGTTTTGCTTACGACTTGAGCTTGGACTATGTAGCAGGAAACTCATCCTCCAGAGGAAATGTCATGCTTGCTAGACCCAACTACAATAGCACATCAACATTCCTTAGGCTGGAAATGGATGGAAATTTGAGGCTTCACACTTACTATAAAGTAGTTCGTTACGGTGCATGGGAGGTGACCTTCACGCTTTTCGATAAAGATTCGAGATGGGAAAACGGGTGCCAACTGCCGGAGCGATGCGGGAAGTTGGGCATTTGTGAGGACAGCCAATGTGTTGCTTGCCCATCGTCTAAGGGACTGTTGGGTTGGAGCGAGAGTTGTGAGCCTGAGAAGCTAACTTCTTGTGATCCAAAGAGCTTCCACTACTACAAAGTTGAAGGGGTTGATCATTTCTTGAGCAAGTACGCAAAGGGAGATTCAATCAAAGAGAGTGATTGTGCTAAGAAGTGTACATTGGATTGCAAGTGTTTGGGCTACTTTTACAACCAAGACACATCAAAGTGTTGGATTGCTTATGATTTGAAAACTTTAACCAAAGTTGCCAATTCCACGCATGTGGGTTACATCAAAGCACCTAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

441

Amino Acids

49.19

Weight (kDa)

7.83

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	92 - 174	6.1e-18	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	957
AciI	CCGC	3 cut(s)	250, 390, 978
AclWI	GGATC	2 cut(s)	161, 1079
AcoI	YGGCCR	2 cut(s)	351, 364
AcsI	RAATTY	2 cut(s)	119, 862
AfaI	GTAC	5 cut(s)	104, 441, 620, 1142, 1189
AfiI	CCNNNNNNNGG	3 cut(s)	291, 847, 967
AgsI	TTSAA	7 cut(s)	100, 426, 700, 715, 1115, 1158, 1261
AjuI	GAANNNNNNNTTGG	6 cut(s)	105, 137, 332, 364, 1175, 1207
AleI	CACNNNNGTG	2 cut(s)	31, 1292
AluBI	AGCT	6 cut(s)	153, 541, 588, 759, 1072, 1095
AluI	AGCT	6 cut(s)	153, 541, 588, 759, 1072, 1095
AlwI	GGATC	2 cut(s)	161, 1079
AoxI	GGCC	3 cut(s)	125, 351, 364
ApoI	RAATTY	2 cut(s)	119, 862
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	2 cut(s)	290, 526
AsuHPI	GGTGA	3 cut(s)	604, 714, 925
AxyI	CCTNAGG	1 cut(s)	842
BalI	TGGCCA	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	957
BanII	GRGCYC	1 cut(s)	695
BccI	CCATC	8 cut(s)	329, 356, 496, 589, 655, 851, 939, 1030
BclI	TGATCA	1 cut(s)	1123
BcnI	CCSGG	2 cut(s)	290, 526
BfaI	CTAG	2 cut(s)	810, 1321
Bme1390I	CCNGG	2 cut(s)	290, 526
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	959
BmrFI	CCNGG	2 cut(s)	290, 526
BmsI	GCATC	5 cut(s)	136, 150, 563, 718, 965
BpmI	CTGGAG	1 cut(s)	772
BpuEI	CTTGAG	3 cut(s)	54, 775, 1153
BpuMI	CCSGG	2 cut(s)	290, 526
BsaBI	GATNNNNATC	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	289, 525
BsaXI	ACNNNNNCTCC	6 cut(s)	248, 278, 770, 800, 1039, 1069
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 847, 967
Bse1I	ACTGG	1 cut(s)	433
Bse21I	CCTNAGG	1 cut(s)	842
Bse3DI	GCAATG	1 cut(s)	63
Bse8I	GATNNNNATC	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	289, 525
BseGI	GGATG	3 cut(s)	165, 782, 862
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	3 cut(s)	291, 847, 967
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	1056
BseNI	ACTGG	1 cut(s)	433
Bsh1285I	CGRYCG	1 cut(s)	254
BshFI	GGCC	3 cut(s)	127, 353, 366
BshNI	GGYRCC	1 cut(s)	957
BsiEI	CGRYCG	1 cut(s)	254
BsiSI	CCGG	3 cut(s)	289, 525, 968
BslFI	GGGAC	2 cut(s)	343, 1047
BslI	CCNNNNNNNGG	3 cut(s)	291, 847, 967
BsmFI	GGGAC	2 cut(s)	343, 1047
BsnI	GGCC	3 cut(s)	127, 353, 366
Bsp1286I	GDGCHC	1 cut(s)	695
Bsp1407I	TGTACA	1 cut(s)	1187
Bsp143I	GATC	3 cut(s)	166, 1084, 1123
BspACI	CCGC	3 cut(s)	250, 390, 978
BspANI	GGCC	3 cut(s)	127, 353, 366
BspCNI	CTCAG	1 cut(s)	1057
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	1 cut(s)	959
BspPI	GGATC	2 cut(s)	161, 1079
BspT107I	GGYRCC	1 cut(s)	957
BsrDI	GCAATG	1 cut(s)	63
BsrGI	TGTACA	1 cut(s)	1187
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	2 cut(s)	289, 525
BssMI	GATC	3 cut(s)	166, 1084, 1123
Bst4CI	ACNGT	3 cut(s)	33, 902, 1038
BstAUI	TGTACA	1 cut(s)	1187
BstC8I	GCNNGC	5 cut(s)	151, 522, 539, 807, 1018
BstDEI	CTNAG	4 cut(s)	842, 1029, 1065, 1179
BstEII	GGTNACC	1 cut(s)	913
BstF5I	GGATG	3 cut(s)	165, 782, 862
BstKTI	GATC	3 cut(s)	169, 1087, 1126
BstMBI	GATC	3 cut(s)	166, 1084, 1123
BstMCI	CGRYCG	1 cut(s)	254
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 560, 1069
BstNSI	RCATGY	2 cut(s)	40, 1295
BstPI	GGTNACC	1 cut(s)	913
BstSCI	CCNGG	2 cut(s)	288, 524
BstXI	CCANNNNNNTGG	1 cut(s)	1294
Bsu36I	CCTNAGG	1 cut(s)	842
BsuRI	GGCC	3 cut(s)	127, 353, 366
BtgZI	GCGATG	1 cut(s)	988
BtsCI	GGATG	3 cut(s)	165, 782, 862
Cac8I	GCNNGC	5 cut(s)	151, 522, 539, 807, 1018
CciI	TCATGA	1 cut(s)	733
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	5 cut(s)	103, 440, 619, 1141, 1188
CviAII	CATG	8 cut(s)	22, 37, 238, 704, 734, 802, 906, 1292
CviQI	GTAC	5 cut(s)	103, 440, 619, 1141, 1188
DdeI	CTNAG	4 cut(s)	842, 1029, 1065, 1179
DpnI	GATC	3 cut(s)	168, 1086, 1125
DpnII	GATC	3 cut(s)	166, 1084, 1123
EaeI	YGGCCR	2 cut(s)	351, 364
Eco24I	GRGCYC	1 cut(s)	695
Eco81I	CCTNAGG	1 cut(s)	842
Eco91I	GGTNACC	1 cut(s)	913
EcoO65I	GGTNACC	1 cut(s)	913
EcoT38I	GRGCYC	1 cut(s)	695
FaeI	CATG	8 cut(s)	25, 40, 241, 707, 737, 805, 909, 1295
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	2 cut(s)	343, 1047
FatI	CATG	8 cut(s)	21, 36, 237, 703, 733, 801, 905, 1291
FauI	CCCGC	1 cut(s)	971
FbaI	TGATCA	1 cut(s)	1123
FokI	GGATG	3 cut(s)	172, 769, 869
FriOI	GRGCYC	1 cut(s)	695
FspBI	CTAG	2 cut(s)	810, 1321
GsuI	CTGGAG	1 cut(s)	772
HaeIII	GGCC	3 cut(s)	127, 353, 366
HapII	CCGG	3 cut(s)	289, 525, 968
Hin1II	CATG	8 cut(s)	25, 40, 241, 707, 737, 805, 909, 1295
HindIII	AAGCTT	1 cut(s)	539
HinfI	GANTC	6 cut(s)	257, 340, 449, 547, 938, 1154
HpaII	CCGG	3 cut(s)	289, 525, 968
HphI	GGTGA	3 cut(s)	604, 714, 925
Hpy166II	GTNNAC	2 cut(s)	722, 1188
Hpy188I	TCNGA	3 cut(s)	159, 256, 559
Hpy188III	TCNNGA	4 cut(s)	734, 789, 942, 1132
Hpy8I	GTNNAC	2 cut(s)	722, 1188
HpyAV	CCTTC	6 cut(s)	107, 193, 229, 328, 928, 1109
HpyCH4III	ACNGT	3 cut(s)	33, 902, 1038
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	4 cut(s)	36, 149, 905, 1200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 560, 1069
HpyF3I	CTNAG	4 cut(s)	842, 1029, 1065, 1179
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	8 cut(s)	25, 40, 241, 707, 737, 805, 909, 1295
Ksp22I	TGATCA	1 cut(s)	1123
Kzo9I	GATC	3 cut(s)	166, 1084, 1123
LmnI	GCTCC	2 cut(s)	970, 1047
LweI	GCATC	5 cut(s)	136, 150, 563, 718, 965
MaeI	CTAG	2 cut(s)	810, 1321
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	6 cut(s)	24, 458, 706, 896, 913, 1298
MalI	GATC	3 cut(s)	168, 1086, 1125
MboI	GATC	3 cut(s)	166, 1084, 1123
MboII	GAAGA	1 cut(s)	657
MhlI	GDGCHC	1 cut(s)	695
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	3 cut(s)	119, 862, 1282
MluNI	TGGCCA	1 cut(s)	353
MlyI	GAGTC	3 cut(s)	266, 443, 556
MmeI	TCCRAC	4 cut(s)	211, 234, 1025, 1223
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	1 cut(s)	1268
MslI	CAYNNNNRTG	4 cut(s)	31, 715, 1237, 1292
Msp20I	TGGCCA	1 cut(s)	353
MspI	CCGG	3 cut(s)	289, 525, 968
MspR9I	CCNGG	2 cut(s)	290, 526
MwoI	GCNNNNNNNGC	3 cut(s)	65, 560, 1069
NciI	CCSGG	2 cut(s)	290, 526
NdeII	GATC	3 cut(s)	166, 1084, 1123
NlaIII	CATG	8 cut(s)	25, 40, 241, 707, 737, 805, 909, 1295
NlaIV	GGNNCC	1 cut(s)	959
NmeAIII	GCCGAG	1 cut(s)	392
NmuCI	GTSAC	3 cut(s)	24, 706, 913
NspI	RCATGY	2 cut(s)	40, 1295
OliI	CACNNNNGTG	2 cut(s)	31, 1292
PagI	TCATGA	1 cut(s)	733
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PfeI	GAWTC	3 cut(s)	340, 938, 1154
PleI	GAGTC	3 cut(s)	265, 443, 555
PpsI	GAGTC	3 cut(s)	265, 443, 555
PspEI	GGTNACC	1 cut(s)	913
PspN4I	GGNNCC	1 cut(s)	959
PspPI	GGNCC	1 cut(s)	125
RsaI	GTAC	5 cut(s)	104, 441, 620, 1142, 1189
RsaNI	GTAC	5 cut(s)	103, 440, 619, 1141, 1188
RseI	CAYNNNNRTG	4 cut(s)	31, 715, 1237, 1292
SaqAI	TTAA	1 cut(s)	1268
Sau3AI	GATC	3 cut(s)	166, 1084, 1123
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	3 cut(s)	266, 443, 556
ScrFI	CCNGG	2 cut(s)	290, 526
SduI	GDGCHC	1 cut(s)	695
SfaNI	GCATC	5 cut(s)	136, 150, 563, 718, 965
SmiMI	CAYNNNNRTG	4 cut(s)	31, 715, 1237, 1292
SmlI	CTYRAG	3 cut(s)	69, 754, 1132
SmoI	CTYRAG	3 cut(s)	69, 754, 1132
Sse9I	AATT	3 cut(s)	119, 862, 1282
SsiI	CCGC	3 cut(s)	250, 390, 978
SspMI	CTAG	2 cut(s)	810, 1321
StyD4I	CCNGG	2 cut(s)	288, 524
TaaI	ACNGT	3 cut(s)	33, 902, 1038
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	4 cut(s)	414, 550, 930, 941
TasI	AATT	3 cut(s)	119, 862, 1282
TatI	WGTACW	2 cut(s)	618, 1187
TfiI	GAWTC	3 cut(s)	340, 938, 1154
Tru1I	TTAA	1 cut(s)	1268
Tru9I	TTAA	1 cut(s)	1268
TseFI	GTSAC	3 cut(s)	24, 706, 913
Tsp45I	GTSAC	3 cut(s)	24, 706, 913
TspDTI	ATGAA	4 cut(s)	31, 52, 121, 126
XapI	RAATTY	2 cut(s)	119, 862
XceI	RCATGY	2 cut(s)	40, 1295
XspI	CTAG	2 cut(s)	810, 1321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.