Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Forward (+)

11743002 .. 11744569

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18383.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGTCTTCCTCCACATTTACAAAGCCATTGCTTTCCCTACTTCTTTTCTCCATCTTTGCTTTCATTGCTCAAGCTCAAGTTCCTGCAAACGAAACTTTCACGCTTGTCAATGAGGGAGAATTCGGGCCTTATGTTGTCGAGTATTTTGGAGACTACCGTATGCTACCTCAAGTCTTCGCCTCCCCATTCCAGCTTGGTTTCTACAACACCACCCCTAATGCCTTCACTCTTGCTATTCGTATGGGTTTGACGCGTTCGGAGTCACTTATGCGTTGGGTTTGGGAGGCCAACCGTGGAAACCCCGTCGGCGAAAACGCCACTTTCTCATTGAGGACTGACGGGAACTTGGTCTTGGCCGAAGCCGATGGCCGAGTGGCTTGGCAGACCAACACTAGCAACAAAGGTGTAGTAGGCTTCACATTGCTTCCCACAGGCAACATGGTCCTCTGTGACGCAAATGGTAACTTTGTGTGGCAAAGTTTTGACTCCCCTACCGACACTTTGTTGGTAGGTCAGTCTCTACGCGCCGGTGGAGTAAGCAAGCTCGTCAGCCGGGCGTCGGAGAAAGAAAACAAAGACGGTCCTTACAGTTTGGTATTGGAGCCAAAGGGGTTGTTTTTGTACTACAAGAGCAGCATCTCCAAAAAGTCACTGCTCTACTCACAATTCACTGACATTCAGCAGGGAACGTTGGAGAATGTGACTTTGAACAGCGCTACGGATGATGGCTGTGTTTGGGACTTATCGTTCTTGACCTCAGGTGGAAACAATCTCTATCTTGCTAGACCCAAGTTCAATGGCACATTGACATACCTCAGGCTCGGAATTGATGGAAACATCAAGCTTTACACTTACTACGGCCAGGTAGATTCATGGGAGCAGACCTTCACTCTATTCGACAGAGACTCAAGGTTCGAAACCGAGTGCCAGTTGCCGGAGCAATGCGGGAGCTTGGGCGTTTGCGAGGACAACCAGTGTGTTGCTTGCCCAACGTCTAACGGACTTTCGGGTTGGAGCACGACATGTGCGCCGGAGAAGCTAACTTCTTGCAAAGCAAACAGCTTCCACTACTACAAGGTTGAAGGGGTCGATCATTTCTTGAGCAAGTATAACAGAGGATCAGCTGTGAAGGAGGTTGATTGTGGTAAGAAGTGCAGTTCCGACTGCAAGTGTCTGGGGTACTTCTACAATAGGGATACATCAAGGTGTTTGATAGCTTATGAGTTGAAGACCTTGACCAAAGTAGCCAATTCGACTCATGTGGGTTTCATCAAGGCACCTAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

430

Amino Acids

47.54

Weight (kDa)

5.92

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	93 - 176	2.4e-18	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1276
AccII	CGCG	2 cut(s)	253, 525
AciI	CCGC	1 cut(s)	945
AclI	AACGTT	1 cut(s)	689
AclWI	GGATC	1 cut(s)	1126
AcoI	YGGCCR	3 cut(s)	354, 367, 859
AcsI	RAATTY	1 cut(s)	119
AcyI	GRCGYC	1 cut(s)	557
AfaI	GTAC	2 cut(s)	623, 1181
AfeI	AGCGCT	1 cut(s)	715
AfiI	CCNNNNNNNGG	2 cut(s)	559, 934
AflIII	ACRYGT	2 cut(s)	251, 1022
AgsI	TTSAA	4 cut(s)	709, 796, 1082, 1228
AjnI	CCWGG	1 cut(s)	861
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AloI	GAACNNNNNNTCC	2 cut(s)	731, 763
AluBI	AGCT	9 cut(s)	74, 193, 544, 844, 951, 1039, 1062, 1124, 1217
AluI	AGCT	9 cut(s)	74, 193, 544, 844, 951, 1039, 1062, 1124, 1217
Alw21I	GWGCWC	1 cut(s)	1019
Alw26I	GTCTC	3 cut(s)	144, 522, 897
AlwI	GGATC	1 cut(s)	1126
Aor51HI	AGCGCT	1 cut(s)	715
AoxI	GGCC	5 cut(s)	125, 285, 354, 367, 859
ApeKI	GCWGC	1 cut(s)	633
ApoI	RAATTY	1 cut(s)	119
ArsI	GACNNNNNNTTYG	2 cut(s)	896, 928
AspLEI	GCGC	3 cut(s)	527, 716, 1030
AspS9I	GGNCC	3 cut(s)	125, 442, 581
AsuC2I	CCSGG	1 cut(s)	554
AsuII	TTCGAA	1 cut(s)	915
AvaII	GGWCC	2 cut(s)	442, 581
AxyI	CCTNAGG	2 cut(s)	757, 815
BanI	GGYRCC	1 cut(s)	1276
BbsI	GAAGAC	2 cut(s)	166, 1235
Bbv12I	GWGCWC	1 cut(s)	1019
BbvI	GCAGC	1 cut(s)	645
BccI	CCATC	4 cut(s)	59, 359, 719, 824
BceAI	ACGGC	1 cut(s)	874
BciT130I	CCWGG	1 cut(s)	863
BciVI	GTATCC	1 cut(s)	1189
BcnI	CCSGG	1 cut(s)	554
BcoDI	GTCTC	3 cut(s)	144, 522, 897
BfaI	CTAG	3 cut(s)	393, 783, 1288
BfoI	RGCGCY	1 cut(s)	717
BfuI	GTATCC	1 cut(s)	1189
BisI	GCNGC	1 cut(s)	634
BlsI	GCNGC	1 cut(s)	635
Bme1390I	CCNGG	2 cut(s)	554, 863
Bme18I	GGWCC	2 cut(s)	442, 581
BmgT120I	GGNCC	3 cut(s)	125, 442, 581
BmiI	GGNNCC	2 cut(s)	603, 1278
BmrFI	CCNGG	2 cut(s)	554, 863
BmsI	GCATC	1 cut(s)	645
BpiI	GAAGAC	2 cut(s)	166, 1235
Bpu14I	TTCGAA	1 cut(s)	915
BpuEI	CTTGAG	5 cut(s)	54, 60, 153, 892, 1120
BpuMI	CCSGG	1 cut(s)	554
BsaHI	GRCGYC	1 cut(s)	557
BsaJI	CCNNGG	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	2 cut(s)	559, 934
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	2 cut(s)	928, 973
Bse21I	CCTNAGG	2 cut(s)	757, 815
Bse3DI	GCAATG	4 cut(s)	26, 63, 419, 947
BseBI	CCWGG	1 cut(s)	863
BseDI	CCNNGG	1 cut(s)	292
BseGI	GGATG	1 cut(s)	727
BseLI	CCNNNNNNNGG	2 cut(s)	559, 934
BseMI	GCAATG	4 cut(s)	26, 63, 419, 947
BseMII	CTCAG	2 cut(s)	771, 829
BseNI	ACTGG	2 cut(s)	928, 973
BseXI	GCAGC	1 cut(s)	645
BsgI	GTGCAG	1 cut(s)	1174
Bsh1236I	CGCG	2 cut(s)	253, 525
BshFI	GGCC	5 cut(s)	127, 287, 356, 369, 861
BshNI	GGYRCC	1 cut(s)	1276
BsiHKAI	GWGCWC	1 cut(s)	1019
BsiSI	CCGG	4 cut(s)	528, 553, 935, 1031
BslFI	GGGAC	1 cut(s)	752
BslI	CCNNNNNNNGG	2 cut(s)	559, 934
BsmAI	GTCTC	3 cut(s)	144, 522, 897
BsmFI	GGGAC	1 cut(s)	752
BsnI	GGCC	5 cut(s)	127, 287, 356, 369, 861
Bsp119I	TTCGAA	1 cut(s)	915
Bsp1286I	GDGCHC	1 cut(s)	1019
Bsp143I	GATC	2 cut(s)	1090, 1118
BspACI	CCGC	1 cut(s)	945
BspANI	GGCC	5 cut(s)	127, 287, 356, 369, 861
BspCNI	CTCAG	2 cut(s)	770, 828
BspFNI	CGCG	2 cut(s)	253, 525
BspLI	GGNNCC	2 cut(s)	603, 1278
BspPI	GGATC	1 cut(s)	1126
BspT104I	TTCGAA	1 cut(s)	915
BspT107I	GGYRCC	1 cut(s)	1276
BsrDI	GCAATG	4 cut(s)	26, 63, 419, 947
BsrFI	RCCGGY	1 cut(s)	527
BsrI	ACTGG	2 cut(s)	928, 973
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	1 cut(s)	292
BssMI	GATC	2 cut(s)	1090, 1118
BssNI	GRCGYC	1 cut(s)	557
Bst2UI	CCWGG	1 cut(s)	863
Bst4CI	ACNGT	4 cut(s)	158, 293, 581, 590
BstACI	GRCGYC	1 cut(s)	557
BstBI	TTCGAA	1 cut(s)	915
BstC8I	GCNNGC	2 cut(s)	542, 985
BstDEI	CTNAG	2 cut(s)	757, 815
BstDSI	CCRYGG	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	727
BstFNI	CGCG	2 cut(s)	253, 525
BstH2I	RGCGCY	1 cut(s)	717
BstHHI	GCGC	3 cut(s)	527, 716, 1030
BstKTI	GATC	2 cut(s)	1093, 1121
BstMAI	GTCTC	3 cut(s)	144, 522, 897
BstMBI	GATC	2 cut(s)	1090, 1118
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 1036
BstNI	CCWGG	1 cut(s)	863
BstNSI	RCATGY	1 cut(s)	1026
BstSCI	CCNGG	2 cut(s)	552, 861
BstUI	CGCG	2 cut(s)	253, 525
BstV1I	GCAGC	1 cut(s)	645
BstV2I	GAAGAC	2 cut(s)	166, 1235
Bsu36I	CCTNAGG	2 cut(s)	757, 815
BsuI	GTATCC	1 cut(s)	1189
BsuRI	GGCC	5 cut(s)	127, 287, 356, 369, 861
BtgI	CCRYGG	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	727
BtsI	GCAGTG	1 cut(s)	650
BtsIMutI	CAGTG	3 cut(s)	650, 669, 980
Cac8I	GCNNGC	2 cut(s)	542, 985
CfoI	GCGC	3 cut(s)	527, 716, 1030
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	3 cut(s)	125, 442, 581
CseI	GACGC	3 cut(s)	259, 461, 546
Csp6I	GTAC	2 cut(s)	622, 1180
CviAII	CATG	4 cut(s)	439, 873, 1023, 1259
CviQI	GTAC	2 cut(s)	622, 1180
DdeI	CTNAG	2 cut(s)	757, 815
DpnI	GATC	2 cut(s)	1092, 1120
DpnII	GATC	2 cut(s)	1090, 1118
EaeI	YGGCCR	3 cut(s)	354, 367, 859
Eco47I	GGWCC	2 cut(s)	442, 581
Eco47III	AGCGCT	1 cut(s)	715
Eco81I	CCTNAGG	2 cut(s)	757, 815
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	861
FaeI	CATG	4 cut(s)	442, 876, 1026, 1262
FaqI	GGGAC	1 cut(s)	752
FatI	CATG	4 cut(s)	438, 872, 1022, 1258
FauI	CCCGC	1 cut(s)	938
Fnu4HI	GCNGC	1 cut(s)	634
FokI	GGATG	1 cut(s)	734
Fsp4HI	GCNGC	1 cut(s)	634
FspBI	CTAG	3 cut(s)	393, 783, 1288
GlaI	GCGC	3 cut(s)	526, 715, 1029
GluI	GCNGC	1 cut(s)	634
HaeII	RGCGCY	1 cut(s)	717
HaeIII	GGCC	5 cut(s)	127, 287, 356, 369, 861
HapII	CCGG	4 cut(s)	528, 553, 935, 1031
HgaI	GACGC	3 cut(s)	259, 461, 546
HhaI	GCGC	3 cut(s)	527, 716, 1030
Hin1I	GRCGYC	1 cut(s)	557
Hin1II	CATG	4 cut(s)	442, 876, 1026, 1262
Hin6I	GCGC	3 cut(s)	525, 714, 1028
HinP1I	GCGC	3 cut(s)	525, 714, 1028
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	5 cut(s)	260, 485, 869, 905, 1255
HpaII	CCGG	4 cut(s)	528, 553, 935, 1031
Hpy188I	TCNGA	4 cut(s)	259, 562, 824, 1162
Hpy188III	TCNNGA	2 cut(s)	751, 1099
Hpy99I	CGWCG	2 cut(s)	308, 562
HpyAV	CCTTC	4 cut(s)	232, 895, 1076, 1123
HpyCH4III	ACNGT	4 cut(s)	158, 293, 581, 590
HpyCH4IV	ACGT	2 cut(s)	689, 992
HpyCH4V	TGCA	4 cut(s)	86, 1050, 1155, 1167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 1036
HpyF3I	CTNAG	2 cut(s)	757, 815
HpySE526I	ACGT	2 cut(s)	689, 992
Hsp92I	GRCGYC	1 cut(s)	557
Hsp92II	CATG	4 cut(s)	442, 876, 1026, 1262
HspAI	GCGC	3 cut(s)	525, 714, 1028
Kzo9I	GATC	2 cut(s)	1090, 1118
LmnI	GCTCC	5 cut(s)	601, 877, 937, 948, 1014
Lsp1109I	GCAGC	1 cut(s)	645
LweI	GCATC	1 cut(s)	645
MaeI	CTAG	3 cut(s)	393, 783, 1288
MaeII	ACGT	2 cut(s)	689, 992
MaeIII	GTNAC	5 cut(s)	261, 449, 461, 648, 700
MalI	GATC	2 cut(s)	1092, 1120
MboI	GATC	2 cut(s)	1090, 1118
MboII	GAAGA	2 cut(s)	166, 1240
MhlI	GDGCHC	1 cut(s)	1019
MluCI	AATT	4 cut(s)	119, 665, 825, 1249
MluI	ACGCGT	1 cut(s)	251
MlyI	GAGTC	4 cut(s)	269, 479, 899, 1249
MmeI	TCCRAC	4 cut(s)	540, 672, 992, 1185
MslI	CAYNNNNRTG	1 cut(s)	1204
MspA1I	CMGCKG	1 cut(s)	1124
MspI	CCGG	4 cut(s)	528, 553, 935, 1031
MspR9I	CCNGG	2 cut(s)	554, 863
MvaI	CCWGG	1 cut(s)	863
MvnI	CGCG	2 cut(s)	253, 525
MwoI	GCNNNNNNNGC	2 cut(s)	65, 1036
NciI	CCSGG	1 cut(s)	554
NdeII	GATC	2 cut(s)	1090, 1118
NlaIII	CATG	4 cut(s)	442, 876, 1026, 1262
NlaIV	GGNNCC	2 cut(s)	603, 1278
NmeAIII	GCCGAG	1 cut(s)	395
NmuCI	GTSAC	4 cut(s)	261, 449, 648, 700
NspI	RCATGY	1 cut(s)	1026
NspV	TTCGAA	1 cut(s)	915
PciI	ACATGT	1 cut(s)	1022
PfeI	GAWTC	1 cut(s)	869
PkrI	GCNGC	1 cut(s)	635
PleI	GAGTC	4 cut(s)	268, 479, 899, 1249
PpsI	GAGTC	4 cut(s)	268, 479, 899, 1249
PscI	ACATGT	1 cut(s)	1022
Psp1406I	AACGTT	1 cut(s)	689
Psp6I	CCWGG	1 cut(s)	861
PspGI	CCWGG	1 cut(s)	861
PspN4I	GGNNCC	2 cut(s)	603, 1278
PspPI	GGNCC	3 cut(s)	125, 442, 581
PvuII	CAGCTG	1 cut(s)	1124
RsaI	GTAC	2 cut(s)	623, 1181
RsaNI	GTAC	2 cut(s)	622, 1180
RseI	CAYNNNNRTG	1 cut(s)	1204
SatI	GCNGC	1 cut(s)	634
Sau3AI	GATC	2 cut(s)	1090, 1118
Sau96I	GGNCC	3 cut(s)	125, 442, 581
SchI	GAGTC	4 cut(s)	269, 479, 899, 1249
ScrFI	CCNGG	2 cut(s)	554, 863
SduI	GDGCHC	1 cut(s)	1019
SfaNI	GCATC	1 cut(s)	645
SfuI	TTCGAA	1 cut(s)	915
SgrAI	CRCCGGYG	1 cut(s)	527
SinI	GGWCC	2 cut(s)	442, 581
SmiMI	CAYNNNNRTG	1 cut(s)	1204
SmlI	CTYRAG	5 cut(s)	69, 75, 168, 907, 1099
SmoI	CTYRAG	5 cut(s)	69, 75, 168, 907, 1099
Sse9I	AATT	4 cut(s)	119, 665, 825, 1249
SsiI	CCGC	1 cut(s)	945
SspMI	CTAG	3 cut(s)	393, 783, 1288
StyD4I	CCNGG	2 cut(s)	552, 861
TaaI	ACNGT	4 cut(s)	158, 293, 581, 590
TaiI	ACGT	2 cut(s)	692, 995
TaqI	TCGA	5 cut(s)	138, 897, 915, 1089, 1253
TasI	AATT	4 cut(s)	119, 665, 825, 1249
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	1 cut(s)	869
TscAI	CASTG	3 cut(s)	657, 676, 980
TseFI	GTSAC	4 cut(s)	261, 449, 648, 700
TseI	GCWGC	1 cut(s)	633
Tsp45I	GTSAC	4 cut(s)	261, 449, 648, 700
TspDTI	ATGAA	3 cut(s)	52, 861, 1258
TspGWI	ACGGA	2 cut(s)	734, 1014
TspRI	CASTG	3 cut(s)	657, 676, 980
VpaK11BI	GGWCC	2 cut(s)	442, 581
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	1 cut(s)	1026
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XspI	CTAG	3 cut(s)	393, 783, 1288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.