Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005489.1

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Forward (+)

27204 .. 28505

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005489.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

atgccttcattggtctgtttattcctcttctcactctttgtttgcattgctcaagctcaagttcctgcaaatcaaaccttcaagttcattaatgaaggagaattcggcccttacattgtcgaatacgatggagactatcgtatgcttgatctctttgcctcacctcatcaacttgccttctacaacacgaccccaaatgccttcaccctcgctctacgcatgggcttgcgccgttcggagtcgcttttccgatgggtttgggaggccaaccgaggaaacccggttggcgaaaatgccacactcacttttgggcaggacggaaacctcgtcttggccgatgctgatggccgagtggcttggcaaacgaacaccgcgaacaaaggtgttgtaggcctcaggttgctttcaaccggaaacatggtccttcacaactcgaagggtgattttgtttgggaaagcttcgactacccaacagacactttgttggtgggtcaatccctgaaggccggaaaagtgagcaagctcgtgagccgggcctcggacacagaaaacaaagatggggcatacagcttggtgatggagccgaaaggattggttttgtactaccagagcaagaacacaccgaagccgttactctactacagattcaccgaaaggaacttcaatgtaaagcgtccgatagatcaagtgatattgcagtgcgagccgaccacagatgaaggttatgcttatgagattactgtgcggtatctactcaacaattctcaggtagggggaatccttccggttaggcccaaatacaatagcacattgacgttcctgaggctcggaatcgatggaaatattaggctttacacttatagtgacaaggtagactggggtgcttgggagacgaccttcactcttttcgactcagataactactggtgggaaggggagtgccagttgccagagaaatgtaggggatttggcctttgcgaggacagccaatgcgttgcttgcccctcatcgaagggactattgggttggagcaaggcttgtgagcccgagaagcttccttcctgtgatacaaagagcttccattactacaaacttgatggggttgatcatttcttgagcaagtataccagtggatcggcaacaaaggaggacgattgtggtagcaagtgtacttcggattgcaagtgcttgggttacttttacaatagggattcatcaaggtgttggatagcttatgatttgaaaaccttgaccaaagttgccaattctactcatgtggcttacatcaaggcacctaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

433

Amino Acids

48.84

Weight (kDa)

6.04

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1291
AccI	GTMKAC	2 cut(s)	873, 1124
AccII	CGCG	1 cut(s)	374
AciI	CCGC	2 cut(s)	372, 745
AclWI	GGATC	1 cut(s)	1141
AcoI	YGGCCR	2 cut(s)	333, 346
AcsI	RAATTY	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	2 cut(s)	602, 1171
AfiI	CCNNNNNNNGG	3 cut(s)	331, 538, 979
AgsI	TTSAA	4 cut(s)	82, 408, 664, 1243
AjuI	GAANNNNNNNTTGG	2 cut(s)	1004, 1036
AluBI	AGCT	7 cut(s)	56, 459, 523, 570, 1054, 1077, 1232
AluI	AGCT	7 cut(s)	56, 459, 523, 570, 1054, 1077, 1232
Alw26I	GTCTC	2 cut(s)	126, 884
AlwI	GGATC	1 cut(s)	1141
Ama87I	CYCGRG	1 cut(s)	1046
AoxI	GGCC	9 cut(s)	106, 264, 333, 346, 391, 504, 534, 791, 970
ApoI	RAATTY	1 cut(s)	101
AseI	ATTAAT	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	4 cut(s)	107, 421, 534, 792
AsuC2I	CCSGG	2 cut(s)	281, 533
AsuHPI	GGTGA	5 cut(s)	153, 196, 452, 586, 640
AvaI	CYCGRG	1 cut(s)	1046
AvaII	GGWCC	1 cut(s)	421
AxyI	CCTNAGG	2 cut(s)	395, 821
BanI	GGYRCC	1 cut(s)	1291
BanII	GRGCYC	1 cut(s)	1047
BauI	CACGAG	1 cut(s)	524
BccI	CCATC	7 cut(s)	122, 246, 338, 551, 571, 830, 1091
BceAI	ACGGC	2 cut(s)	216, 613
BclI	TGATCA	1 cut(s)	1105
BcnI	CCSGG	2 cut(s)	281, 533
BcoDI	GTCTC	2 cut(s)	126, 884
BfmI	CTRYAG	1 cut(s)	640
Bme1390I	CCNGG	2 cut(s)	281, 533
Bme18I	GGWCC	1 cut(s)	421
BmeT110I	CYCGRG	1 cut(s)	1046
BmgT120I	GGNCC	4 cut(s)	107, 421, 534, 792
BmiI	GGNNCC	2 cut(s)	582, 1293
BmrFI	CCNGG	2 cut(s)	281, 533
BmrI	ACTGGG	1 cut(s)	886
BmsI	GCATC	1 cut(s)	328
BmuI	ACTGGG	1 cut(s)	886
BpuEI	CTTGAG	3 cut(s)	36, 42, 1135
BpuMI	CCSGG	2 cut(s)	281, 533
Bsa29I	ATCGAT	1 cut(s)	834
BsaJI	CCNNGG	2 cut(s)	271, 537
BsaWI	WCCGGW	2 cut(s)	410, 784
BsaXI	ACNNNNNCTCC	2 cut(s)	929, 959
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 538, 979
Bse1I	ACTGG	4 cut(s)	881, 929, 943, 1128
Bse21I	CCTNAGG	2 cut(s)	395, 821
Bse3DI	GCAATG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	834
BseDI	CCNNGG	2 cut(s)	271, 537
BseLI	CCNNNNNNNGG	3 cut(s)	331, 538, 979
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	4 cut(s)	409, 779, 812, 927
BseNI	ACTGG	4 cut(s)	881, 929, 943, 1128
Bsh1236I	CGCG	1 cut(s)	374
BshFI	GGCC	9 cut(s)	108, 266, 335, 348, 393, 506, 536, 793, 972
BshNI	GGYRCC	1 cut(s)	1291
BshVI	ATCGAT	1 cut(s)	834
BsiHKCI	CYCGRG	1 cut(s)	1046
BsiSI	CCGG	5 cut(s)	281, 411, 507, 532, 785
BslFI	GGGAC	1 cut(s)	1029
BslI	CCNNNNNNNGG	3 cut(s)	331, 538, 979
BsmAI	GTCTC	2 cut(s)	126, 884
BsmBI	CGTCTC	1 cut(s)	884
BsmFI	GGGAC	1 cut(s)	1029
BsnI	GGCC	9 cut(s)	108, 266, 335, 348, 393, 506, 536, 793, 972
BsoBI	CYCGRG	1 cut(s)	1046
Bsp1286I	GDGCHC	1 cut(s)	1047
Bsp143I	GATC	4 cut(s)	148, 682, 1105, 1133
BspACI	CCGC	2 cut(s)	372, 745
BspANI	GGCC	9 cut(s)	108, 266, 335, 348, 393, 506, 536, 793, 972
BspCNI	CTCAG	4 cut(s)	408, 778, 813, 926
BspDI	ATCGAT	1 cut(s)	834
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	2 cut(s)	582, 1293
BspPI	GGATC	1 cut(s)	1141
BspT107I	GGYRCC	1 cut(s)	1291
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	4 cut(s)	881, 929, 943, 1128
BssECI	CCNNGG	2 cut(s)	271, 537
BssMI	GATC	4 cut(s)	148, 682, 1105, 1133
BssNAI	GTATAC	1 cut(s)	1125
BssSI	CACGAG	1 cut(s)	524
Bst1107I	GTATAC	1 cut(s)	1125
Bst2BI	CACGAG	1 cut(s)	524
Bst4CI	ACNGT	1 cut(s)	742
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	4 cut(s)	227, 521, 704, 1000
BstDEI	CTNAG	4 cut(s)	395, 765, 821, 913
BstENI	CCTNNNNNAGG	1 cut(s)	977
BstFNI	CGCG	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	4 cut(s)	151, 685, 1108, 1136
BstMAI	GTCTC	2 cut(s)	126, 884
BstMBI	GATC	4 cut(s)	148, 682, 1105, 1133
BstMWI	GCNNNNNNNGC	4 cut(s)	703, 984, 999, 1051
BstSCI	CCNGG	2 cut(s)	279, 531
BstSFI	CTRYAG	1 cut(s)	640
BstUI	CGCG	1 cut(s)	374
BstZ17I	GTATAC	1 cut(s)	1125
Bsu15I	ATCGAT	1 cut(s)	834
Bsu36I	CCTNAGG	2 cut(s)	395, 821
BsuRI	GGCC	9 cut(s)	108, 266, 335, 348, 393, 506, 536, 793, 972
BsuTUI	ATCGAT	1 cut(s)	834
BtsI	GCAGTG	1 cut(s)	704
BtsIMutI	CAGTG	2 cut(s)	704, 1135
Cac8I	GCNNGC	4 cut(s)	227, 521, 704, 1000
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	4 cut(s)	107, 421, 534, 792
ClaI	ATCGAT	1 cut(s)	834
CseI	GACGC	1 cut(s)	662
Csp6I	GTAC	2 cut(s)	601, 1170
CviAII	CATG	3 cut(s)	220, 418, 1274
CviQI	GTAC	2 cut(s)	601, 1170
DdeI	CTNAG	4 cut(s)	395, 765, 821, 913
DpnI	GATC	4 cut(s)	150, 684, 1107, 1135
DpnII	GATC	4 cut(s)	148, 682, 1105, 1133
EaeI	YGGCCR	2 cut(s)	333, 346
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco147I	AGGCCT	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	1047
Eco47I	GGWCC	1 cut(s)	421
Eco57I	CTGAAG	1 cut(s)	521
Eco81I	CCTNAGG	2 cut(s)	395, 821
Eco88I	CYCGRG	1 cut(s)	1046
EcoNI	CCTNNNNNAGG	1 cut(s)	977
EcoRI	GAATTC	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	1047
Esp3I	CGTCTC	1 cut(s)	884
FaeI	CATG	3 cut(s)	223, 421, 1277
FaqI	GGGAC	1 cut(s)	1029
FatI	CATG	3 cut(s)	219, 417, 1273
FbaI	TGATCA	1 cut(s)	1105
FblI	GTMKAC	2 cut(s)	873, 1124
FriOI	GRGCYC	1 cut(s)	1047
GlaI	GCGC	1 cut(s)	230
HaeIII	GGCC	9 cut(s)	108, 266, 335, 348, 393, 506, 536, 793, 972
HapII	CCGG	5 cut(s)	281, 411, 507, 532, 785
HgaI	GACGC	1 cut(s)	662
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	223, 421, 1277
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HindIII	AAGCTT	2 cut(s)	457, 1052
HinfI	GANTC	6 cut(s)	239, 645, 777, 831, 911, 1211
HpaII	CCGG	5 cut(s)	281, 411, 507, 532, 785
HphI	GGTGA	5 cut(s)	153, 196, 452, 586, 640
Hpy166II	GTNNAC	3 cut(s)	874, 1125, 1170
Hpy188I	TCNGA	7 cut(s)	238, 251, 541, 678, 830, 916, 1177
Hpy188III	TCNNGA	3 cut(s)	526, 820, 1114
Hpy8I	GTNNAC	3 cut(s)	874, 1125, 1170
HpyCH4III	ACNGT	1 cut(s)	742
HpyCH4IV	ACGT	1 cut(s)	815
HpyCH4V	TGCA	4 cut(s)	45, 68, 697, 1182
HpyF10VI	GCNNNNNNNGC	4 cut(s)	703, 984, 999, 1051
HpyF3I	CTNAG	4 cut(s)	395, 765, 821, 913
HpySE526I	ACGT	1 cut(s)	815
Hsp92II	CATG	3 cut(s)	223, 421, 1277
HspAI	GCGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	1105
Kzo9I	GATC	4 cut(s)	148, 682, 1105, 1133
LmnI	GCTCC	2 cut(s)	580, 1029
LweI	GCATC	1 cut(s)	328
MaeII	ACGT	1 cut(s)	815
MaeIII	GTNAC	3 cut(s)	630, 863, 1193
MalI	GATC	4 cut(s)	150, 684, 1107, 1135
MboI	GATC	4 cut(s)	148, 682, 1105, 1133
MboII	GAAGA	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	1047
MluCI	AATT	4 cut(s)	101, 760, 1264, 1297
MlyI	GAGTC	2 cut(s)	248, 905
MmeI	TCCRAC	2 cut(s)	1007, 1205
MseI	TTAA	2 cut(s)	90, 1300
MslI	CAYNNNNRTG	1 cut(s)	1219
MspI	CCGG	5 cut(s)	281, 411, 507, 532, 785
MspR9I	CCNGG	2 cut(s)	281, 533
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	4 cut(s)	703, 984, 999, 1051
NciI	CCSGG	2 cut(s)	281, 533
NdeII	GATC	4 cut(s)	148, 682, 1105, 1133
NlaIII	CATG	3 cut(s)	223, 421, 1277
NlaIV	GGNNCC	2 cut(s)	582, 1293
NmeAIII	GCCGAG	1 cut(s)	374
NmuCI	GTSAC	1 cut(s)	863
PceI	AGGCCT	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	3 cut(s)	324, 333, 371
PfeI	GAWTC	4 cut(s)	645, 777, 831, 1211
PleI	GAGTC	2 cut(s)	247, 905
PpsI	GAGTC	2 cut(s)	247, 905
PshBI	ATTAAT	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	582, 1293
PspPI	GGNCC	4 cut(s)	107, 421, 534, 792
RsaI	GTAC	2 cut(s)	602, 1171
RsaNI	GTAC	2 cut(s)	601, 1170
RseI	CAYNNNNRTG	1 cut(s)	1219
SaqAI	TTAA	2 cut(s)	90, 1300
Sau3AI	GATC	4 cut(s)	148, 682, 1105, 1133
Sau96I	GGNCC	4 cut(s)	107, 421, 534, 792
SchI	GAGTC	2 cut(s)	248, 905
ScrFI	CCNGG	2 cut(s)	281, 533
SduI	GDGCHC	1 cut(s)	1047
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	640
SinI	GGWCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	1 cut(s)	1219
SmlI	CTYRAG	3 cut(s)	51, 57, 1114
SmoI	CTYRAG	3 cut(s)	51, 57, 1114
Sse9I	AATT	4 cut(s)	101, 760, 1264, 1297
SseBI	AGGCCT	1 cut(s)	393
SsiI	CCGC	2 cut(s)	372, 745
SspI	AATATT	1 cut(s)	844
StuI	AGGCCT	1 cut(s)	393
StyD4I	CCNGG	2 cut(s)	279, 531
TaaI	ACNGT	1 cut(s)	742
TaiI	ACGT	1 cut(s)	818
TaqI	TCGA	6 cut(s)	120, 434, 462, 834, 909, 1010
TasI	AATT	4 cut(s)	101, 760, 1264, 1297
TatI	WGTACW	2 cut(s)	600, 1169
TfiI	GAWTC	4 cut(s)	645, 777, 831, 1211
Tru1I	TTAA	2 cut(s)	90, 1300
Tru9I	TTAA	2 cut(s)	90, 1300
TscAI	CASTG	2 cut(s)	704, 1135
TseFI	GTSAC	1 cut(s)	863
Tsp45I	GTSAC	1 cut(s)	863
TspDTI	ATGAA	4 cut(s)	76, 108, 732, 1203
TspGWI	ACGGA	1 cut(s)	333
TspRI	CASTG	2 cut(s)	704, 1135
VpaK11BI	GGWCC	1 cut(s)	421
VspI	ATTAAT	1 cut(s)	90
XagI	CCTNNNNNAGG	1 cut(s)	977
XapI	RAATTY	1 cut(s)	101
XmiI	GTMKAC	2 cut(s)	873, 1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.