Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Reverse (-)

29646003 .. 29647691

Gene Structure 1689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGAATTCTCAACCACATTAGCTCTGTTCTTCACTCTCTCCATATTCTTGGTCGGAGCACAAGCCAAAGTTCCCGTCGACGACCAATTTCGAGTGGTCAACGAAGGAGGCTACACCGATTACAGTCCCATCGAATACAACCCCGACGTACGTGGCTTCGTCCCCTTCAGCGACAACTTCCGTCTCTGTTTCTACAACACAACCCAAAACGCATACACTCTCGCTCTTAGAATCGGAAACAGAGCCCAAGAATCCACTCTAAGATGGGTCTGGGAAGCAAACAGAGGCTCACCAGTCAAAGAAAACGCCACGTTGACTTTCGGCGAAGATGGAAACCTTGTACTTGCTGAAGCCGATGGCCGCGTGGTCTGGCAAACGAACACGGCTAACAAAGGCGTCGTGGGGATCAAAATTTTGGAGAATGGCAATATGGTAATATATGATTCAAATGGAAAATTCGTATGGCAAAGCTTTGACTCTCCGACCGACACGCTTCTCGTTGGACAGTCTTTGAAACTCAACGGTCAAAACAAGCTCGTAAGCAGACTTTCTCCATCGGTCAACGCAAACGGACCGTACAGTCTCGTGATGGAAGCCAAGAAGCTAGTCTTGTACTACACGACAAACAAAACTCCAAAACCAATCGGTTACTACGAATACGAATTCTTCACCAAGATAGCTCAGTTACAGTCTATGACGTTCCAAGCTGTGGAGGATGCCGACACCACGTGGGGTCTACACATGGAAGGTGTCGACTCTGGTTCTCAATTCAACGTCTCGACGTTCCTCTCGCGGCCTAAACACAATGCGACGTTGAGTTTTCTTCGGTTAGAGTCAGACGGAAACATCAGAGTTTGGAGTTACAGTACGTTGGCGACTTCCACGGCTTGGGACGTAACGTACACGGCGTTTACTAACGACAACACTGACGGTAACGATGAGTGTAGGATCCCTGAGCATTGTTTGGGGTTTGGTTTGTGTAAGAAAGGTCAGTGTAACGCTTGTCCTAGCGACATAGGGCTTCTTGGTTGGGATGAGACTTGCAAGATTCCGAGTCTCGCTAGTTGCGATCCCAAGACATTTCACTATTTCAAGATCGAAGGAGCTGATAGTTTTATGACGAAGTATAACGGTGGATCAACGACAACGGAGAGTGCGTGTGGGGACAAATGTACGAGAGATTGTAAGTGTTTAGGGTTTTTCTACAATAGGAAGAGTTCGAGGTGTTGGTTGGGTTATGAGCTCAAGACATTGACTAAAACCGGAGATACTTCCCTAGTTGCTTATGTCAAGGCTCCGAATGCTAGCAAGAAGTCAGCTCTTGCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

443

Amino Acids

49.19

Weight (kDa)

5.94

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	90 - 183	1.4e-20	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	579
AccB7I	CCANNNNNTGG	2 cut(s)	709, 888
AccI	GTMKAC	3 cut(s)	78, 736, 753
AccII	CGCG	2 cut(s)	363, 793
AciI	CCGC	2 cut(s)	361, 793
AclWI	GGATC	5 cut(s)	413, 943, 956, 1064, 1144
AcoI	YGGCCR	1 cut(s)	358
AcsI	RAATTY	4 cut(s)	5, 411, 455, 662
AcuI	CTGAAG	2 cut(s)	151, 369
AcvI	CACGTG	1 cut(s)	729
AcyI	GRCGYC	1 cut(s)	396
AdeI	CACNNNGTG	1 cut(s)	729
AfaI	GTAC	7 cut(s)	150, 342, 578, 614, 868, 902, 1174
AfiI	CCNNNNNNNGG	2 cut(s)	709, 888
AgsI	TTSAA	4 cut(s)	447, 514, 772, 1093
AluBI	AGCT	9 cut(s)	23, 471, 535, 604, 680, 707, 1106, 1243, 1319
AluI	AGCT	9 cut(s)	23, 471, 535, 604, 680, 707, 1106, 1243, 1319
Alw21I	GWGCWC	2 cut(s)	61, 1245
Alw26I	GTCTC	5 cut(s)	188, 587, 781, 1031, 1061
AlwI	GGATC	5 cut(s)	413, 943, 956, 1064, 1144
AoxI	GGCC	2 cut(s)	358, 794
ApoI	RAATTY	4 cut(s)	5, 411, 455, 662
ArsI	GACNNNNNNTTYG	2 cut(s)	60, 92
AspS9I	GGNCC	1 cut(s)	572
AsuHPI	GGTGA	2 cut(s)	282, 661
AsuNHI	GCTAGC	1 cut(s)	1304
AvaII	GGWCC	1 cut(s)	572
BamHI	GGATCC	1 cut(s)	948
BanII	GRGCYC	2 cut(s)	247, 1245
BauI	CACGAG	1 cut(s)	584
BbrPI	CACGTG	1 cut(s)	729
Bbv12I	GWGCWC	2 cut(s)	61, 1245
BccI	CCATC	6 cut(s)	137, 258, 323, 350, 562, 583
BceAI	ACGGC	3 cut(s)	399, 900, 921
BcoDI	GTCTC	5 cut(s)	188, 587, 781, 1031, 1061
BfaI	CTAG	5 cut(s)	605, 1008, 1062, 1277, 1305
BisI	GCNGC	2 cut(s)	361, 794
BlsI	GCNGC	2 cut(s)	362, 795
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	2 cut(s)	950, 1296
BmsI	GCATC	1 cut(s)	706
BmtI	GCTAGC	1 cut(s)	1308
Bpu10I	CCTNAGC	1 cut(s)	954
BpuEI	CTTGAG	1 cut(s)	1229
BsaAI	YACGTR	2 cut(s)	152, 729
BsaHI	GRCGYC	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	882
BsaWI	WCCGGW	1 cut(s)	1262
BsaXI	ACNNNNNCTCC	4 cut(s)	850, 880, 1142, 1172
Bsc4I	CCNNNNNNNGG	2 cut(s)	709, 888
Bse1I	ACTGG	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	882
BseGI	GGATG	2 cut(s)	721, 1039
BseLI	CCNNNNNNNGG	2 cut(s)	709, 888
BseMII	CTCAG	2 cut(s)	695, 945
BseNI	ACTGG	1 cut(s)	293
Bsh1236I	CGCG	2 cut(s)	363, 793
Bsh1285I	CGRYCG	1 cut(s)	486
BshFI	GGCC	2 cut(s)	360, 796
BsiEI	CGRYCG	1 cut(s)	486
BsiHKAI	GWGCWC	2 cut(s)	61, 1245
BsiSI	CCGG	1 cut(s)	1263
BsiWI	CGTACG	1 cut(s)	148
BslFI	GGGAC	4 cut(s)	111, 146, 905, 1178
BslI	CCNNNNNNNGG	2 cut(s)	709, 888
BsmAI	GTCTC	5 cut(s)	188, 587, 781, 1031, 1061
BsmBI	CGTCTC	2 cut(s)	188, 781
BsmFI	GGGAC	4 cut(s)	111, 146, 905, 1178
BsmI	GAATGC	1 cut(s)	1306
BsnI	GGCC	2 cut(s)	360, 796
Bsp1286I	GDGCHC	3 cut(s)	61, 247, 1245
Bsp143I	GATC	5 cut(s)	405, 948, 1069, 1095, 1136
BspACI	CCGC	2 cut(s)	361, 793
BspANI	GGCC	2 cut(s)	360, 796
BspCNI	CTCAG	2 cut(s)	694, 946
BspFNI	CGCG	2 cut(s)	363, 793
BspLI	GGNNCC	2 cut(s)	950, 1296
BspOI	GCTAGC	1 cut(s)	1308
BspPI	GGATC	5 cut(s)	413, 943, 956, 1064, 1144
BsrI	ACTGG	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	882
BssMI	GATC	5 cut(s)	405, 948, 1069, 1095, 1136
BssNI	GRCGYC	1 cut(s)	396
BssSI	CACGAG	1 cut(s)	584
Bst2BI	CACGAG	1 cut(s)	584
Bst4CI	ACNGT	9 cut(s)	125, 507, 524, 576, 581, 690, 866, 932, 1133
Bst6I	CTCTTC	1 cut(s)	1208
BstACI	GRCGYC	1 cut(s)	396
BstBAI	YACGTR	2 cut(s)	152, 729
BstC8I	GCNNGC	1 cut(s)	1306
BstDEI	CTNAG	4 cut(s)	227, 260, 681, 954
BstDSI	CCRYGG	1 cut(s)	882
BstF5I	GGATG	2 cut(s)	721, 1039
BstFNI	CGCG	2 cut(s)	363, 793
BstKTI	GATC	5 cut(s)	408, 951, 1072, 1098, 1139
BstMAI	GTCTC	5 cut(s)	188, 587, 781, 1031, 1061
BstMBI	GATC	5 cut(s)	405, 948, 1069, 1095, 1136
BstMCI	CGRYCG	1 cut(s)	486
BstMWI	GCNNNNNNNGC	1 cut(s)	1301
BstUI	CGCG	2 cut(s)	363, 793
BstX2I	RGATCY	1 cut(s)	948
BstXI	CCANNNNNNTGG	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	948
BsuRI	GGCC	2 cut(s)	360, 796
BtgI	CCRYGG	1 cut(s)	882
BtsCI	GGATG	2 cut(s)	721, 1039
BtsIMutI	CAGTG	2 cut(s)	924, 998
Cac8I	GCNNGC	1 cut(s)	1306
Cfr13I	GGNCC	1 cut(s)	572
CpoI	CGGWCCG	1 cut(s)	572
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	7 cut(s)	149, 341, 577, 613, 867, 901, 1173
CspI	CGGWCCG	1 cut(s)	572
CviAII	CATG	1 cut(s)	742
CviQI	GTAC	7 cut(s)	149, 341, 577, 613, 867, 901, 1173
DdeI	CTNAG	4 cut(s)	227, 260, 681, 954
DpnI	GATC	5 cut(s)	407, 950, 1071, 1097, 1138
DpnII	GATC	5 cut(s)	405, 948, 1069, 1095, 1136
DraIII	CACNNNGTG	1 cut(s)	729
DrdI	GACNNNNNNGTC	1 cut(s)	579
DseDI	GACNNNNNNGTC	1 cut(s)	579
EaeI	YGGCCR	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	1208
EarI	CTCTTC	1 cut(s)	1208
Ecl136II	GAGCTC	1 cut(s)	1243
Eco24I	GRGCYC	2 cut(s)	247, 1245
Eco47I	GGWCC	1 cut(s)	572
Eco53kI	GAGCTC	1 cut(s)	1243
Eco57I	CTGAAG	2 cut(s)	151, 369
Eco72I	CACGTG	1 cut(s)	729
EcoICRI	GAGCTC	1 cut(s)	1243
EcoRI	GAATTC	2 cut(s)	5, 662
EcoT38I	GRGCYC	2 cut(s)	247, 1245
Esp3I	CGTCTC	2 cut(s)	188, 781
FaeI	CATG	1 cut(s)	745
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FaqI	GGGAC	4 cut(s)	111, 146, 905, 1178
FatI	CATG	1 cut(s)	741
FblI	GTMKAC	3 cut(s)	78, 736, 753
Fnu4HI	GCNGC	2 cut(s)	361, 794
FokI	GGATG	2 cut(s)	728, 1046
FriOI	GRGCYC	2 cut(s)	247, 1245
Fsp4HI	GCNGC	2 cut(s)	361, 794
FspBI	CTAG	5 cut(s)	605, 1008, 1062, 1277, 1305
GluI	GCNGC	2 cut(s)	361, 794
HaeIII	GGCC	2 cut(s)	360, 796
HapII	CCGG	1 cut(s)	1263
HgaI	GACGC	1 cut(s)	385
Hin1I	GRCGYC	1 cut(s)	396
Hin1II	CATG	1 cut(s)	745
HincII	GTYRAC	5 cut(s)	79, 100, 315, 562, 754
HindII	GTYRAC	5 cut(s)	79, 100, 315, 562, 754
HindIII	AAGCTT	1 cut(s)	469
HinfI	GANTC	8 cut(s)	231, 251, 443, 476, 755, 833, 1048, 1054
HpaII	CCGG	1 cut(s)	1263
HphI	GGTGA	2 cut(s)	282, 661
Hpy166II	GTNNAC	8 cut(s)	79, 100, 315, 562, 737, 754, 903, 912
Hpy188I	TCNGA	7 cut(s)	56, 236, 483, 838, 851, 1053, 1299
Hpy188III	TCNNGA	4 cut(s)	586, 778, 1093, 1246
Hpy8I	GTNNAC	8 cut(s)	79, 100, 315, 562, 737, 754, 903, 912
Hpy99I	CGWCG	6 cut(s)	80, 83, 149, 401, 784, 814
HpyAV	CCTTC	4 cut(s)	98, 175, 740, 1094
HpyCH4III	ACNGT	9 cut(s)	125, 507, 524, 576, 581, 690, 866, 932, 1133
HpyCH4V	TGCA	1 cut(s)	1044
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1301
HpyF3I	CTNAG	4 cut(s)	227, 260, 681, 954
Hsp92I	GRCGYC	1 cut(s)	396
Hsp92II	CATG	1 cut(s)	745
Kzo9I	GATC	5 cut(s)	405, 948, 1069, 1095, 1136
LmnI	GCTCC	3 cut(s)	56, 1103, 1300
LpnPI	CCDG	6 cut(s)	256, 306, 355, 744, 966, 1276
LweI	GCATC	1 cut(s)	706
MaeI	CTAG	5 cut(s)	605, 1008, 1062, 1277, 1305
MaeIII	GTNAC	6 cut(s)	647, 684, 860, 895, 932, 995
MalI	GATC	5 cut(s)	407, 950, 1071, 1097, 1138
MboI	GATC	5 cut(s)	405, 948, 1069, 1095, 1136
MboII	GAAGA	5 cut(s)	22, 338, 658, 815, 1225
MflI	RGATCY	1 cut(s)	948
MhlI	GDGCHC	3 cut(s)	61, 247, 1245
MluCI	AATT	6 cut(s)	5, 86, 411, 455, 662, 767
MlyI	GAGTC	4 cut(s)	470, 749, 842, 1063
MmeI	TCCRAC	3 cut(s)	34, 481, 506
MnlI	CCTC	5 cut(s)	101, 278, 706, 797, 1215
MspI	CCGG	1 cut(s)	1263
Mva1269I	GAATGC	1 cut(s)	1306
MvnI	CGCG	2 cut(s)	363, 793
MwoI	GCNNNNNNNGC	1 cut(s)	1301
NdeII	GATC	5 cut(s)	405, 948, 1069, 1095, 1136
NheI	GCTAGC	1 cut(s)	1304
NlaIII	CATG	1 cut(s)	745
NlaIV	GGNNCC	2 cut(s)	950, 1296
PcsI	WCGNNNNNNNCGW	4 cut(s)	651, 905, 1065, 1154
PctI	GAATGC	1 cut(s)	1306
PfeI	GAWTC	4 cut(s)	231, 251, 443, 1048
Pfl23II	CGTACG	1 cut(s)	148
PflMI	CCANNNNNTGG	2 cut(s)	709, 888
PkrI	GCNGC	2 cut(s)	362, 795
PleI	GAGTC	4 cut(s)	470, 749, 841, 1062
PmaCI	CACGTG	1 cut(s)	729
PmlI	CACGTG	1 cut(s)	729
PpsI	GAGTC	4 cut(s)	470, 749, 841, 1062
Ppu21I	YACGTR	2 cut(s)	152, 729
Psp124BI	GAGCTC	1 cut(s)	1245
PspCI	CACGTG	1 cut(s)	729
PspLI	CGTACG	1 cut(s)	148
PspN4I	GGNNCC	2 cut(s)	950, 1296
PspPI	GGNCC	1 cut(s)	572
PsuI	RGATCY	1 cut(s)	948
RsaI	GTAC	7 cut(s)	150, 342, 578, 614, 868, 902, 1174
RsaNI	GTAC	7 cut(s)	149, 341, 577, 613, 867, 901, 1173
Rsr2I	CGGWCCG	1 cut(s)	572
RsrII	CGGWCCG	1 cut(s)	572
SacI	GAGCTC	1 cut(s)	1245
SalI	GTCGAC	2 cut(s)	77, 752
SatI	GCNGC	2 cut(s)	361, 794
Sau3AI	GATC	5 cut(s)	405, 948, 1069, 1095, 1136
Sau96I	GGNCC	1 cut(s)	572
SchI	GAGTC	4 cut(s)	470, 749, 842, 1063
SduI	GDGCHC	3 cut(s)	61, 247, 1245
SfaNI	GCATC	1 cut(s)	706
SgrDI	CGTCGACG	1 cut(s)	77
SinI	GGWCC	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	1244
SmoI	CTYRAG	1 cut(s)	1244
Sse9I	AATT	6 cut(s)	5, 86, 411, 455, 662, 767
SsiI	CCGC	2 cut(s)	361, 793
SspMI	CTAG	5 cut(s)	605, 1008, 1062, 1277, 1305
SstI	GAGCTC	1 cut(s)	1245
TaaI	ACNGT	9 cut(s)	125, 507, 524, 576, 581, 690, 866, 932, 1133
TaqI	TCGA	7 cut(s)	78, 91, 132, 753, 779, 1098, 1220
TaqII	GACCGA	2 cut(s)	500, 547
TasI	AATT	6 cut(s)	5, 86, 411, 455, 662, 767
TatI	WGTACW	2 cut(s)	340, 612
TauI	GCSGC	2 cut(s)	363, 796
TfiI	GAWTC	4 cut(s)	231, 251, 443, 1048
TscAI	CASTG	2 cut(s)	931, 998
TspGWI	ACGGA	4 cut(s)	170, 585, 855, 1163
TspRI	CASTG	2 cut(s)	931, 998
Van91I	CCANNNNNTGG	2 cut(s)	709, 888
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	4 cut(s)	5, 411, 455, 662
XmiI	GTMKAC	3 cut(s)	78, 736, 753
XspI	CTAG	5 cut(s)	605, 1008, 1062, 1277, 1305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.