Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001062

Physical Location & Seq

Genomic Coordinates Forward (+)

9631499 .. 9632991

Gene Structure 1493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G166000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGCTTCCTCTACATCCACCATCTCATTGCTTTCCCTCTTTCTCTTCTCACTCTTGGCTTTCGTTTCTCAAGCTCAAGTTCCTGCGAACGAAACTTTCAAGTTTGTCAACGATGGAGAGTTTGGGCCTTACATTATAGAATACGATGGAAACTACCGTATGATTAGTGTGTTTAACGCCCCCTTCCAACTTGGCTTCTACAACACCACCCCAAATGCCTTCACTCTTGCTCTTCGCATGGGCTTGAGGCGATCCGAGTCACTCTTCCGTTGGGTTTGGGAGGCCAACCGGGGAAACCCAGTTGGCGAAAACGCCACTCTCACATTCGGGACAGACGGCAACCTTGTTTTGGCCGAGGCTGATGGCCGAGTGGCGTGGCAAACCAACACTGCCAACAAAGGGGTGGTAGGCTTCAAGTTGCTTCCAACAGGCAACATGGTGCTTTATGACTCAAAGGGCAACTTCGTTTGGCAAAGCTTTGACCACCCTACCGACACTTTGTTGGTGGACCAATCTCTAAAGGCCGGGGCAGTAAACAAGCTCGTGAGTCGGGCCTCCGAGACCGAAAACAAAGATGGGGCTTATAGCTTGGTGATGGAGCCCAAGGGAATATTTTTGTACTATAAGAGCAAAAACTCCCCAAAGCCATTGCTCTACTCTCAAGTGATTACTATTGATAAGGGCTCACTTGACCATGCAACCTTGAAATGTACCCCGGACACAGATGAGGGTTATGCTTATGACATAACCCTAAATTATGAAGCGGCCAACTCTTCTTCTGGTGGAAATCGCATTCTAGCTAGACCCAAATACAACAGCACGTTGACCTTCCTCAGGCTTGGAATTGATGGAAATGTCAAGCTATACACTTACAACGACAAGGTGGATTGGGGTGCATGGGAGGTGACCTTCACTCTTTTCGACAGAGATAATTCAATCTGGGAAACTGAGTGCCAGTTGCCGGAGCGATGCGGAAACTTTGGCCTCTGCGAGGACAGCCAATGTGTTGCTTGTCCATCGTCAAAGGGATTGTTGGGTTGGAGCAAGACTTGTGAGCCCGAGAAGCTAACTTCTTGCAATCCAAAGAGCTTCCGCTACTACAAAGTTGAAGGGGTTGATCACTTTTTGAGCAAGTACACTAGGGGAGATGCTACAAAGGAGGCTGATTGTGGTAAGAAGTGTACTTCGGATTGCAAGTGTTTGGGGTACTTTTACAACCAGGATACATCAAGGTGTTGGATAGCTTATGATTTGAAAACTTTGACCAAAGTTGCCAATTCTACTCACGTGGCTTATATCAAGACACCTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

438

Amino Acids

48.76

Weight (kDa)

6.17

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78850 AT1G78860
fragaria_vesca	FvH4_3g18371 FvH4_3g18380 FvH4_3g18383 FvH4_3g18410
malus_domestica	MD03G1242400.v1.1 MD11G1262100.v1.1 MD11G1262300.v1.1 MD11G1262400.v1.1 MD11G1262600.v1.1
prunus_persica	Prupe.4G165600_v2.0.a1 Prupe.4G166000_v2.0.a1 Prupe.4G166100_v2.0.a1 Prupe.4G166200_v2.0.a1
pyrus_communis	pycom11g23110 pycom11g23150
rosa_chinensis	RchiOBHm_Chr5g0031021 RchiOBHm_Chr5g0031031 RchiOBHm_Chr5g0031081 RchiOBHm_Chr5g0031091 RchiOBHm_Chr5g0031131 RchiOBHm_Chr5g0031141
rosa_laevigata	RLG00000033282 RLG00000033283 RLG00000033284 RLG00000033285
rosa_multiflora	Rmu_co8472871.1_g000001 Rmu_co8500049.1_g000001 Rmu_sc0001523.1_g000001 Rmu_sc0005489.1_g000008 Rmu_sc0020175.1_g000004 Rmu_sc0023422.1_g000001 Rmu_sc0023423.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049150 Rroxscaffold_1G00049170 Rroxscaffold_1G00049190 Rroxscaffold_1G00049200 Rroxscaffold_1G00049210 Rroxscaffold_1G00049240
rosa_rugosa	Rorug05G0122300 Rorug05G0122400 Rorug05G0122500
rosa_samantha	Rh5AG215600 Rh5AG215700 Rh5AG216000 Rh5BG214800 Rh5BG214900 Rh5BG215000 Rh5BG215500 Rh5CG238900 Rh5DG219300 Rh5DG219400 Rh5DG219600 Rh5DG219900 Rh5DG220100
rosa_wichuraiana	Rw5G019730 Rw5G019740 Rw5G019750 Rw5G019760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	764, 972, 1093
AclWI	GGATC	1 cut(s)	246
AcoI	YGGCCR	3 cut(s)	351, 364, 765
AcvI	CACGTG	1 cut(s)	1288
AfaI	GTAC	5 cut(s)	620, 712, 1136, 1183, 1208
AfiI	CCNNNNNNNGG	5 cut(s)	349, 399, 834, 961, 991
AgsI	TTSAA	6 cut(s)	100, 415, 706, 936, 1109, 1255
AjnI	CCWGG	1 cut(s)	1218
AluBI	AGCT	9 cut(s)	74, 477, 541, 588, 800, 862, 1066, 1089, 1244
AluI	AGCT	9 cut(s)	74, 477, 541, 588, 800, 862, 1066, 1089, 1244
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	1 cut(s)	246
Ama87I	CYCGRG	1 cut(s)	1058
AoxI	GGCC	8 cut(s)	125, 282, 351, 364, 522, 552, 765, 982
AspS9I	GGNCC	3 cut(s)	125, 508, 552
AsuC2I	CCSGG	3 cut(s)	290, 526, 716
AsuHPI	GGTGA	2 cut(s)	604, 916
AvaI	CYCGRG	1 cut(s)	1058
AvaII	GGWCC	1 cut(s)	508
AxyI	CCTNAGG	1 cut(s)	833
BanII	GRGCYC	3 cut(s)	603, 686, 1059
BauI	CACGAG	1 cut(s)	542
BbrPI	CACGTG	1 cut(s)	1288
BccI	CCATC	8 cut(s)	29, 107, 140, 356, 569, 589, 842, 1024
BceAI	ACGGC	1 cut(s)	352
BciT130I	CCWGG	1 cut(s)	1220
BciVI	GTATCC	1 cut(s)	1216
BclI	TGATCA	1 cut(s)	1117
BcnI	CCSGG	3 cut(s)	290, 526, 716
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	4 cut(s)	797, 801, 1140, 1312
BfuI	GTATCC	1 cut(s)	1216
BisI	GCNGC	1 cut(s)	765
BlsI	GCNGC	1 cut(s)	766
Bme1390I	CCNGG	4 cut(s)	290, 526, 716, 1220
Bme18I	GGWCC	1 cut(s)	508
BmeT110I	CYCGRG	1 cut(s)	1058
BmgT120I	GGNCC	3 cut(s)	125, 508, 552
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	4 cut(s)	290, 526, 716, 1220
BmrI	ACTGGG	1 cut(s)	293
BmsI	GCATC	2 cut(s)	959, 1138
BmuI	ACTGGG	1 cut(s)	293
BpuEI	CTTGAG	4 cut(s)	54, 60, 265, 645
BpuMI	CCSGG	3 cut(s)	290, 526, 716
BsaAI	YACGTR	1 cut(s)	1288
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	5 cut(s)	289, 354, 525, 603, 714
Bsc4I	CCNNNNNNNGG	5 cut(s)	349, 399, 834, 961, 991
Bse1I	ACTGG	2 cut(s)	299, 955
Bse21I	CCTNAGG	1 cut(s)	833
Bse3DI	GCAATG	2 cut(s)	26, 647
BseBI	CCWGG	1 cut(s)	1220
BseDI	CCNNGG	5 cut(s)	289, 354, 525, 603, 714
BseGI	GGATG	1 cut(s)	14
BseLI	CCNNNNNNNGG	5 cut(s)	349, 399, 834, 961, 991
BseMI	GCAATG	2 cut(s)	26, 647
BseMII	CTCAG	2 cut(s)	847, 939
BseNI	ACTGG	2 cut(s)	299, 955
BshFI	GGCC	8 cut(s)	127, 284, 353, 366, 524, 554, 767, 984
BsiHKCI	CYCGRG	1 cut(s)	1058
BsiSI	CCGG	4 cut(s)	289, 525, 716, 962
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	5 cut(s)	349, 399, 834, 961, 991
BsmAI	GTCTC	1 cut(s)	554
BsmFI	GGGAC	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	792
BsnI	GGCC	8 cut(s)	127, 284, 353, 366, 524, 554, 767, 984
Bso31I	GGTCTC	1 cut(s)	554
BsoBI	CYCGRG	1 cut(s)	1058
Bsp1286I	GDGCHC	3 cut(s)	603, 686, 1059
Bsp143I	GATC	2 cut(s)	251, 1117
BspACI	CCGC	3 cut(s)	764, 972, 1093
BspANI	GGCC	8 cut(s)	127, 284, 353, 366, 524, 554, 767, 984
BspCNI	CTCAG	2 cut(s)	846, 940
BspLI	GGNNCC	1 cut(s)	600
BspPI	GGATC	1 cut(s)	246
BspQI	GCTCTTC	1 cut(s)	237
BspTNI	GGTCTC	1 cut(s)	554
BsrDI	GCAATG	2 cut(s)	26, 647
BsrI	ACTGG	2 cut(s)	299, 955
BssECI	CCNNGG	5 cut(s)	289, 354, 525, 603, 714
BssMI	GATC	2 cut(s)	251, 1117
BssSI	CACGAG	1 cut(s)	542
BssT1I	CCWWGG	1 cut(s)	603
Bst2BI	CACGAG	1 cut(s)	542
Bst2UI	CCWGG	1 cut(s)	1220
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	4 cut(s)	50, 237, 269, 778
BstBAI	YACGTR	1 cut(s)	1288
BstDEI	CTNAG	2 cut(s)	833, 948
BstEII	GGTNACC	1 cut(s)	904
BstENI	CCTNNNNNAGG	2 cut(s)	832, 989
BstF5I	GGATG	1 cut(s)	14
BstKTI	GATC	2 cut(s)	254, 1120
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	2 cut(s)	251, 1117
BstMWI	GCNNNNNNNGC	2 cut(s)	996, 1063
BstNI	CCWGG	1 cut(s)	1220
BstPI	GGTNACC	1 cut(s)	904
BstSCI	CCNGG	4 cut(s)	288, 524, 714, 1218
Bsu36I	CCTNAGG	1 cut(s)	833
BsuI	GTATCC	1 cut(s)	1216
BsuRI	GGCC	8 cut(s)	127, 284, 353, 366, 524, 554, 767, 984
BtgZI	GCGATG	1 cut(s)	982
BtsCI	GGATG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	387
Cfr13I	GGNCC	3 cut(s)	125, 508, 552
Csp6I	GTAC	5 cut(s)	619, 711, 1135, 1182, 1207
CviAII	CATG	4 cut(s)	238, 436, 695, 897
CviQI	GTAC	5 cut(s)	619, 711, 1135, 1182, 1207
DdeI	CTNAG	2 cut(s)	833, 948
DpnI	GATC	2 cut(s)	253, 1119
DpnII	GATC	2 cut(s)	251, 1117
EaeI	YGGCCR	3 cut(s)	351, 364, 765
Eam1104I	CTCTTC	4 cut(s)	50, 237, 269, 778
EarI	CTCTTC	4 cut(s)	50, 237, 269, 778
Eco130I	CCWWGG	1 cut(s)	603
Eco24I	GRGCYC	3 cut(s)	603, 686, 1059
Eco31I	GGTCTC	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	508
Eco72I	CACGTG	1 cut(s)	1288
Eco81I	CCTNAGG	1 cut(s)	833
Eco88I	CYCGRG	1 cut(s)	1058
Eco91I	GGTNACC	1 cut(s)	904
EcoNI	CCTNNNNNAGG	2 cut(s)	832, 989
EcoO65I	GGTNACC	1 cut(s)	904
EcoRII	CCWGG	1 cut(s)	1218
EcoT14I	CCWWGG	1 cut(s)	603
EcoT38I	GRGCYC	3 cut(s)	603, 686, 1059
ErhI	CCWWGG	1 cut(s)	603
FaeI	CATG	4 cut(s)	241, 439, 698, 900
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	4 cut(s)	237, 435, 694, 896
FbaI	TGATCA	1 cut(s)	1117
Fnu4HI	GCNGC	1 cut(s)	765
FriOI	GRGCYC	3 cut(s)	603, 686, 1059
Fsp4HI	GCNGC	1 cut(s)	765
FspBI	CTAG	4 cut(s)	797, 801, 1140, 1312
GluI	GCNGC	1 cut(s)	765
HaeIII	GGCC	8 cut(s)	127, 284, 353, 366, 524, 554, 767, 984
HapII	CCGG	4 cut(s)	289, 525, 716, 962
Hin1II	CATG	4 cut(s)	241, 439, 698, 900
HincII	GTYRAC	2 cut(s)	109, 825
HindII	GTYRAC	2 cut(s)	109, 825
HindIII	AAGCTT	1 cut(s)	475
HinfI	GANTC	3 cut(s)	257, 449, 547
HpaII	CCGG	4 cut(s)	289, 525, 716, 962
HphI	GGTGA	2 cut(s)	604, 916
Hpy166II	GTNNAC	6 cut(s)	109, 508, 535, 825, 1137, 1182
Hpy188I	TCNGA	3 cut(s)	256, 559, 1189
Hpy188III	TCNNGA	3 cut(s)	328, 544, 1300
Hpy8I	GTNNAC	6 cut(s)	109, 508, 535, 825, 1137, 1182
HpyAV	CCTTC	5 cut(s)	193, 229, 838, 919, 1103
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	2 cut(s)	821, 1287
HpyCH4V	TGCA	4 cut(s)	698, 896, 1077, 1194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	996, 1063
HpyF3I	CTNAG	2 cut(s)	833, 948
HpySE526I	ACGT	2 cut(s)	821, 1287
Hsp92II	CATG	4 cut(s)	241, 439, 698, 900
Ksp22I	TGATCA	1 cut(s)	1117
Kzo9I	GATC	2 cut(s)	251, 1117
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	3 cut(s)	598, 964, 1041
LweI	GCATC	2 cut(s)	959, 1138
MaeI	CTAG	4 cut(s)	797, 801, 1140, 1312
MaeII	ACGT	2 cut(s)	821, 1287
MaeIII	GTNAC	2 cut(s)	258, 904
MalI	GATC	2 cut(s)	253, 1119
MboI	GATC	2 cut(s)	251, 1117
MboII	GAAGA	5 cut(s)	37, 224, 256, 765, 768
MhlI	GDGCHC	3 cut(s)	603, 686, 1059
MluCI	AATT	4 cut(s)	754, 843, 931, 1276
MlyI	GAGTC	3 cut(s)	266, 443, 556
MmeI	TCCRAC	4 cut(s)	211, 449, 1019, 1217
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	1231
MspI	CCGG	4 cut(s)	289, 525, 716, 962
MspR9I	CCNGG	4 cut(s)	290, 526, 716, 1220
Mva1269I	GAATGC	1 cut(s)	792
MvaI	CCWGG	1 cut(s)	1220
MwoI	GCNNNNNNNGC	2 cut(s)	996, 1063
NciI	CCSGG	3 cut(s)	290, 526, 716
NdeII	GATC	2 cut(s)	251, 1117
NlaIII	CATG	4 cut(s)	241, 439, 698, 900
NlaIV	GGNNCC	1 cut(s)	600
NmeAIII	GCCGAG	2 cut(s)	379, 392
NmuCI	GTSAC	2 cut(s)	258, 904
PciSI	GCTCTTC	1 cut(s)	237
PctI	GAATGC	1 cut(s)	792
PkrI	GCNGC	1 cut(s)	766
PleI	GAGTC	3 cut(s)	265, 443, 555
PmaCI	CACGTG	1 cut(s)	1288
PmlI	CACGTG	1 cut(s)	1288
PpsI	GAGTC	3 cut(s)	265, 443, 555
Ppu21I	YACGTR	1 cut(s)	1288
Psp6I	CCWGG	1 cut(s)	1218
PspCI	CACGTG	1 cut(s)	1288
PspEI	GGTNACC	1 cut(s)	904
PspGI	CCWGG	1 cut(s)	1218
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	3 cut(s)	125, 508, 552
RsaI	GTAC	5 cut(s)	620, 712, 1136, 1183, 1208
RsaNI	GTAC	5 cut(s)	619, 711, 1135, 1182, 1207
RseI	CAYNNNNRTG	1 cut(s)	1231
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	765
Sau3AI	GATC	2 cut(s)	251, 1117
Sau96I	GGNCC	3 cut(s)	125, 508, 552
SchI	GAGTC	3 cut(s)	266, 443, 556
ScrFI	CCNGG	4 cut(s)	290, 526, 716, 1220
SduI	GDGCHC	3 cut(s)	603, 686, 1059
SfaNI	GCATC	2 cut(s)	959, 1138
SinI	GGWCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	1 cut(s)	1231
SmlI	CTYRAG	4 cut(s)	69, 75, 244, 660
SmoI	CTYRAG	4 cut(s)	69, 75, 244, 660
Sse9I	AATT	4 cut(s)	754, 843, 931, 1276
SsiI	CCGC	3 cut(s)	764, 972, 1093
SspI	AATATT	1 cut(s)	612
SspMI	CTAG	4 cut(s)	797, 801, 1140, 1312
StyD4I	CCNGG	4 cut(s)	288, 524, 714, 1218
StyI	CCWWGG	1 cut(s)	603
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	2 cut(s)	824, 1290
TaqI	TCGA	1 cut(s)	921
TaqII	GACCGA	1 cut(s)	578
TasI	AATT	4 cut(s)	754, 843, 931, 1276
TatI	WGTACW	3 cut(s)	618, 1134, 1181
TauI	GCSGC	1 cut(s)	767
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	2 cut(s)	258, 904
Tsp45I	GTSAC	2 cut(s)	258, 904
TspDTI	ATGAA	1 cut(s)	774
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	508
XagI	CCTNNNNNAGG	2 cut(s)	832, 989
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XspI	CTAG	4 cut(s)	797, 801, 1140, 1312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.