FvH4_3g18380

Epidermis-specific secreted glycoprotein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
11732708 .. 11734712
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18380.t1

Sequence Viewer

Length: 1407 bp
ATGACTTTATTAGCCCTCAATCTGCTGTATAAAATGAGGTTTGCCAAGCTCTCTGCAACACAAACCACGCTTCACAATATGTCTTCTCCTTCATTCACAATGTCAGTCTTGCTGTCCCTTTCCCTTTTCTCACTCTTTGCTTTTCTTGCTCAGGCTCAAGTCCCGGCAAACGAAACTTTCAAGTTTGTCAATGACCAAGAGTTTGGCCCTTACATTGTAGAATACGACGGAAGCTACCGTATGCTTAGCATCTTTGCTTCTCCTTTCCAATTTGCCTTCTACAACACCACCCCGAATGCCTTCACTTTGGCTCTCCGGATGGGCCTGACCCGCTCGGAGTCCCTCTTCCGTTGGGTTTGGGAGGCCAACCGAGGAAACCCCGTTGGCGAAAATGCCACCCTCACCTTCGGGACCAACGGAAACCTCGTCTTGGCCGACGCCGACGGCCGCGTTGCATGGCAAACCAACACGGCCAATAAGGGTGTCGTCGGCCTCAAGTTGCTTCCAACCGGAAACTTGGTCCTCTACAACTCCAAGGGCGTTTTCGTTTGGCAAAGCTTCGACTACCCGACAGACACTTTGTTGGTTGGCCAGTCGCTTAAGGCAGGGGGAGTGAACAAGCTCGTCAGCCGGCTATCGGAGTCAGAAAACAAAGATGGGCCGTACAGCTTGGTGATGGAGCCTAAAGGATTGGCTATGTACTACAAGAGCCCCAACTCCCCGAAGCCTTTGCTCTACTTCTCATTCTATGACAGGATCACCGTTCAGACGGGCACTTTGGACCATGTGACGCTAAATGTGGCTGATACAGATGACGGTTTTGCCTATGACATAACCCTAGATTATCAAATCGCCAACAGTACTAACTCGGGTACACTCATTCTAGCAAGACCAAAGTACAACGCCACATCGACATTCCTCAGGCTCGGAATCGATGGAAATGTGAAGTTTTACACTTACAACGACAAGGTCGATTATGGTGCTTGGGAGGTAACCTTTAGACTGTTCGACAGAGATAATTTCGTTTGGGAACAGGAATGCCAGTTACCTGAGCGATGCGGCAGCTTCGGCGTCTGCGAGGACAGCCAGTGTGTTGCTTGCCCATCTTCAAGTGGAGTGTTGTTGGGTTGGAGCAAGACTTGTGCGGCCGAGAAGCTAACTTCTTGTGATGCAAAGAGCTTCCACTACTACAAAATCGATGGGGTGGATCATTTCTTGAGCAAGTTCACAACTGGATCGGCTACGAAGGAGGCCGACTGTGGTAAGAAGTGCACTTCCGACTGCAAGTGTTTGGGGTACTTTTACAATAGGGATTCATCAAGGTGTTGGATAGCTTATGAATTGAAGACCTTGACCAAAGTTGCCAACTCCACTCATGTGGGTTACATCAAGGCACCTAATCACTAG

Protein Analysis

469

Amino Acids

52.15

Weight (kDa)

6.97

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 119 - 203 2.4e-19 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1393
AccBSI CCGCTC 1 cut(s) 333
AccII CGCG 1 cut(s) 450
AccIII TCCGGA 1 cut(s) 315
AciI CCGC 4 cut(s) 331, 448, 1059, 1145
AclWI GGATC 3 cut(s) 764, 1215, 1243
AcoI YGGCCR 5 cut(s) 432, 445, 471, 589, 1146
AcyI GRCGYC 2 cut(s) 438, 1071
AfaI GTAC 6 cut(s) 665, 701, 862, 874, 899, 1298
AfiI CCNNNNNNNGG 2 cut(s) 430, 637
AflII CTTAAG 1 cut(s) 599
AgsI TTSAA 3 cut(s) 181, 1110, 1345
AjuI GAANNNNNNNTTGG 2 cut(s) 527, 559
AleI CACNNNNGTG 1 cut(s) 1376
AluBI AGCT 9 cut(s) 49, 234, 558, 622, 669, 1065, 1156, 1179, 1334
AluI AGCT 9 cut(s) 49, 234, 558, 622, 669, 1065, 1156, 1179, 1334
Alw21I GWGCWC 1 cut(s) 1274
Alw44I GTGCAC 1 cut(s) 1270
AlwI GGATC 3 cut(s) 764, 1215, 1243
Ama87I CYCGRG 1 cut(s) 868
Aor13HI TCCGGA 1 cut(s) 315
ApaLI GTGCAC 1 cut(s) 1270
ApeKI GCWGC 1 cut(s) 1062
ArsI GACNNNNNNTTYG 6 cut(s) 185, 217, 562, 594, 760, 792
Asp700I GAANNNNTTC 1 cut(s) 299
AspS9I GGNCC 6 cut(s) 206, 322, 411, 520, 659, 781
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 3 cut(s) 394, 685, 751
AvaI CYCGRG 1 cut(s) 868
AvaII GGWCC 3 cut(s) 411, 520, 781
AxyI CCTNAGG 1 cut(s) 920
BaeGI GKGCMC 2 cut(s) 776, 1274
BalI TGGCCA 1 cut(s) 591
BanI GGYRCC 1 cut(s) 1393
BanII GRGCYC 1 cut(s) 713
BbsI GAAGAC 2 cut(s) 75, 1352
Bbv12I GWGCWC 1 cut(s) 1274
BbvI GCAGC 1 cut(s) 1074
BccI CCATC 6 cut(s) 313, 650, 670, 929, 1111, 1193
BceAI ACGGC 3 cut(s) 460, 486, 646
BcgI CGANNNNNNTGC 4 cut(s) 712, 746, 962, 996
BcnI CCSGG 1 cut(s) 164
BfaI CTAG 3 cut(s) 839, 884, 1405
BfrI CTTAAG 1 cut(s) 599
BisI GCNGC 4 cut(s) 448, 1060, 1063, 1146
BlpI GCTNAGC 1 cut(s) 245
BlsI GCNGC 4 cut(s) 449, 1061, 1064, 1147
BmcAI AGTACT 1 cut(s) 862
Bme1390I CCNGG 1 cut(s) 164
Bme18I GGWCC 3 cut(s) 411, 520, 781
BmeT110I CYCGRG 1 cut(s) 868
BmgT120I GGNCC 6 cut(s) 206, 322, 411, 520, 659, 781
BmiI GGNNCC 3 cut(s) 412, 681, 1395
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 3 cut(s) 258, 1046, 1159
BpiI GAAGAC 2 cut(s) 75, 1352
Bpu10I CCTNAGC 2 cut(s) 150, 1050
Bpu1102I GCTNAGC 1 cut(s) 245
BpuEI CTTGAG 3 cut(s) 141, 479, 1237
BpuMI CCSGG 1 cut(s) 164
Bsa29I ATCGAT 2 cut(s) 933, 1197
BsaHI GRCGYC 2 cut(s) 438, 1071
BsaJI CCNNGG 2 cut(s) 370, 534
BsaWI WCCGGW 2 cut(s) 315, 509
Bsc4I CCNNNNNNNGG 2 cut(s) 430, 637
Bse118I RCCGGY 1 cut(s) 630
Bse1I ACTGG 4 cut(s) 592, 1042, 1087, 1237
Bse21I CCTNAGG 1 cut(s) 920
BseAI TCCGGA 1 cut(s) 315
BseCI ATCGAT 2 cut(s) 933, 1197
BseDI CCNNGG 2 cut(s) 370, 534
BseGI GGATG 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 430, 637
BseMII CTCAG 3 cut(s) 164, 934, 1041
BseNI ACTGG 4 cut(s) 592, 1042, 1087, 1237
BseSI GKGCMC 2 cut(s) 776, 1274
BseX3I CGGCCG 2 cut(s) 445, 1146
BseXI GCAGC 1 cut(s) 1074
Bsh1236I CGCG 1 cut(s) 450
Bsh1285I CGRYCG 2 cut(s) 448, 1149
BshNI GGYRCC 1 cut(s) 1393
BshVI ATCGAT 2 cut(s) 933, 1197
BsiEI CGRYCG 2 cut(s) 448, 1149
BsiHKAI GWGCWC 1 cut(s) 1274
BsiHKCI CYCGRG 1 cut(s) 868
BsiSI CCGG 4 cut(s) 164, 316, 510, 631
BslFI GGGAC 4 cut(s) 100, 146, 325, 424
BslI CCNNNNNNNGG 2 cut(s) 430, 637
BsmFI GGGAC 4 cut(s) 100, 146, 325, 424
BsmI GAATGC 2 cut(s) 301, 1043
BsoBI CYCGRG 1 cut(s) 868
Bsp1286I GDGCHC 3 cut(s) 713, 776, 1274
Bsp13I TCCGGA 1 cut(s) 315
Bsp143I GATC 3 cut(s) 756, 1207, 1235
Bsp1720I GCTNAGC 1 cut(s) 245
BspACI CCGC 4 cut(s) 331, 448, 1059, 1145
BspCNI CTCAG 3 cut(s) 163, 933, 1042
BspDI ATCGAT 2 cut(s) 933, 1197
BspEI TCCGGA 1 cut(s) 315
BspFNI CGCG 1 cut(s) 450
BspLI GGNNCC 3 cut(s) 412, 681, 1395
BspPI GGATC 3 cut(s) 764, 1215, 1243
BspT107I GGYRCC 1 cut(s) 1393
BspTI CTTAAG 1 cut(s) 599
BsrBI CCGCTC 1 cut(s) 333
BsrFI RCCGGY 1 cut(s) 630
BsrI ACTGG 4 cut(s) 592, 1042, 1087, 1237
BssAI RCCGGY 1 cut(s) 630
BssECI CCNNGG 2 cut(s) 370, 534
BssMI GATC 3 cut(s) 756, 1207, 1235
BssNI GRCGYC 2 cut(s) 438, 1071
BssT1I CCWWGG 1 cut(s) 534
Bst4CI ACNGT 6 cut(s) 239, 763, 818, 860, 1005, 1259
Bst6I CTCTTC 1 cut(s) 350
BstACI GRCGYC 2 cut(s) 438, 1071
BstAFI CTTAAG 1 cut(s) 599
BstC8I GCNNGC 2 cut(s) 632, 1099
BstDEI CTNAG 4 cut(s) 150, 245, 920, 1050
BstEII GGTNACC 1 cut(s) 991
BstF5I GGATG 1 cut(s) 324
BstFNI CGCG 1 cut(s) 450
BstKTI GATC 3 cut(s) 759, 1210, 1238
BstMBI GATC 3 cut(s) 756, 1207, 1235
BstMCI CGRYCG 2 cut(s) 448, 1149
BstMWI GCNNNNNNNGC 4 cut(s) 146, 330, 1068, 1083
BstPI GGTNACC 1 cut(s) 991
BstSCI CCNGG 1 cut(s) 162
BstSLI GKGCMC 2 cut(s) 776, 1274
BstUI CGCG 1 cut(s) 450
BstV1I GCAGC 1 cut(s) 1074
BstV2I GAAGAC 2 cut(s) 75, 1352
BstXI CCANNNNNNTGG 2 cut(s) 203, 1378
BstZI CGGCCG 2 cut(s) 445, 1146
Bsu15I ATCGAT 2 cut(s) 933, 1197
Bsu36I CCTNAGG 1 cut(s) 920
BsuTUI ATCGAT 2 cut(s) 933, 1197
BtgZI GCGATG 1 cut(s) 1069
BtsCI GGATG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 1094
Cac8I GCNNGC 2 cut(s) 632, 1099
Cfr10I RCCGGY 1 cut(s) 630
Cfr13I GGNCC 6 cut(s) 206, 322, 411, 520, 659, 781
ClaI ATCGAT 2 cut(s) 933, 1197
CseI GACGC 3 cut(s) 446, 799, 1060
Csp6I GTAC 6 cut(s) 664, 700, 861, 873, 898, 1297
CviAII CATG 3 cut(s) 456, 785, 1376
CviQI GTAC 6 cut(s) 664, 700, 861, 873, 898, 1297
DdeI CTNAG 4 cut(s) 150, 245, 920, 1050
DpnI GATC 3 cut(s) 758, 1209, 1237
DpnII GATC 3 cut(s) 756, 1207, 1235
EaeI YGGCCR 5 cut(s) 432, 445, 471, 589, 1146
EagI CGGCCG 2 cut(s) 445, 1146
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
EclXI CGGCCG 2 cut(s) 445, 1146
Eco130I CCWWGG 1 cut(s) 534
Eco24I GRGCYC 1 cut(s) 713
Eco47I GGWCC 3 cut(s) 411, 520, 781
Eco52I CGGCCG 2 cut(s) 445, 1146
Eco81I CCTNAGG 1 cut(s) 920
Eco88I CYCGRG 1 cut(s) 868
Eco91I GGTNACC 1 cut(s) 991
EcoO65I GGTNACC 1 cut(s) 991
EcoT14I CCWWGG 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 713
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 3 cut(s) 459, 788, 1379
FaqI GGGAC 4 cut(s) 100, 146, 325, 424
FatI CATG 3 cut(s) 455, 784, 1375
FauI CCCGC 1 cut(s) 338
Fnu4HI GCNGC 4 cut(s) 448, 1060, 1063, 1146
FokI GGATG 1 cut(s) 331
FriOI GRGCYC 1 cut(s) 713
Fsp4HI GCNGC 4 cut(s) 448, 1060, 1063, 1146
FspBI CTAG 3 cut(s) 839, 884, 1405
GluI GCNGC 4 cut(s) 448, 1060, 1063, 1146
HapII CCGG 4 cut(s) 164, 316, 510, 631
HgaI GACGC 3 cut(s) 446, 799, 1060
Hin1I GRCGYC 2 cut(s) 438, 1071
Hin1II CATG 3 cut(s) 459, 788, 1379
HindIII AAGCTT 1 cut(s) 556
HinfI GANTC 4 cut(s) 338, 641, 930, 1313
HpaII CCGG 4 cut(s) 164, 316, 510, 631
HphI GGTGA 3 cut(s) 394, 685, 751
Hpy166II GTNNAC 4 cut(s) 616, 875, 1227, 1272
Hpy188I TCNGA 6 cut(s) 337, 640, 646, 768, 929, 1279
Hpy188III TCNNGA 3 cut(s) 316, 409, 1216
Hpy8I GTNNAC 4 cut(s) 616, 875, 1227, 1272
Hpy99I CGWCG 4 cut(s) 230, 440, 446, 491
HpyAV CCTTC 5 cut(s) 99, 286, 310, 415, 1240
HpyCH4III ACNGT 6 cut(s) 239, 763, 818, 860, 1005, 1259
HpyCH4V TGCA 5 cut(s) 56, 455, 1172, 1272, 1284
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 330, 1068, 1083
HpyF3I CTNAG 4 cut(s) 150, 245, 920, 1050
Hsp92I GRCGYC 2 cut(s) 438, 1071
Hsp92II CATG 3 cut(s) 459, 788, 1379
Kpn2I TCCGGA 1 cut(s) 315
KroI GCCGGC 1 cut(s) 630
KroNI GCCGGC 1 cut(s) 632
Kzo9I GATC 3 cut(s) 756, 1207, 1235
LmnI GCTCC 2 cut(s) 679, 1131
Lsp1109I GCAGC 1 cut(s) 1074
LweI GCATC 3 cut(s) 258, 1046, 1159
MaeI CTAG 3 cut(s) 839, 884, 1405
MaeIII GTNAC 4 cut(s) 787, 991, 1044, 1382
MalI GATC 3 cut(s) 758, 1209, 1237
MbiI CCGCTC 1 cut(s) 333
MboI GATC 3 cut(s) 756, 1207, 1235
MboII GAAGA 4 cut(s) 75, 337, 1098, 1357
MhlI GDGCHC 3 cut(s) 713, 776, 1274
MlsI TGGCCA 1 cut(s) 591
MluCI AATT 3 cut(s) 269, 1018, 1340
MluNI TGGCCA 1 cut(s) 591
MlyI GAGTC 2 cut(s) 347, 650
MmeI TCCRAC 4 cut(s) 530, 1109, 1302, 1307
Mox20I TGGCCA 1 cut(s) 591
MroI TCCGGA 1 cut(s) 315
MroNI GCCGGC 1 cut(s) 630
MroXI GAANNNNTTC 1 cut(s) 299
MscI TGGCCA 1 cut(s) 591
MseI TTAA 1 cut(s) 600
MslI CAYNNNNRTG 2 cut(s) 1321, 1376
Msp20I TGGCCA 1 cut(s) 591
MspCI CTTAAG 1 cut(s) 599
MspI CCGG 4 cut(s) 164, 316, 510, 631
MspR9I CCNGG 1 cut(s) 164
Mva1269I GAATGC 2 cut(s) 301, 1043
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 4 cut(s) 146, 330, 1068, 1083
NaeI GCCGGC 1 cut(s) 632
NciI CCSGG 1 cut(s) 164
NdeII GATC 3 cut(s) 756, 1207, 1235
NgoMIV GCCGGC 1 cut(s) 630
NlaIII CATG 3 cut(s) 459, 788, 1379
NlaIV GGNNCC 3 cut(s) 412, 681, 1395
NmeAIII GCCGAG 1 cut(s) 1174
NmuCI GTSAC 1 cut(s) 787
OliI CACNNNNGTG 1 cut(s) 1376
PcsI WCGNNNNNNNCGW 4 cut(s) 423, 432, 969, 1074
PctI GAATGC 2 cut(s) 301, 1043
PdiI GCCGGC 1 cut(s) 632
PdmI GAANNNNTTC 1 cut(s) 299
PfeI GAWTC 2 cut(s) 930, 1313
PflFI GACNNNGTC 1 cut(s) 968
PkrI GCNGC 4 cut(s) 449, 1061, 1064, 1147
PleI GAGTC 2 cut(s) 346, 649
PpsI GAGTC 2 cut(s) 346, 649
PspEI GGTNACC 1 cut(s) 991
PspN4I GGNNCC 3 cut(s) 412, 681, 1395
PspPI GGNCC 6 cut(s) 206, 322, 411, 520, 659, 781
PsyI GACNNNGTC 1 cut(s) 968
RsaI GTAC 6 cut(s) 665, 701, 862, 874, 899, 1298
RsaNI GTAC 6 cut(s) 664, 700, 861, 873, 898, 1297
RseI CAYNNNNRTG 2 cut(s) 1321, 1376
SaqAI TTAA 1 cut(s) 600
SatI GCNGC 4 cut(s) 448, 1060, 1063, 1146
Sau3AI GATC 3 cut(s) 756, 1207, 1235
Sau96I GGNCC 6 cut(s) 206, 322, 411, 520, 659, 781
ScaI AGTACT 1 cut(s) 862
SchI GAGTC 2 cut(s) 347, 650
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 3 cut(s) 713, 776, 1274
SfaNI GCATC 3 cut(s) 258, 1046, 1159
SinI GGWCC 3 cut(s) 411, 520, 781
SmiMI CAYNNNNRTG 2 cut(s) 1321, 1376
SmlI CTYRAG 4 cut(s) 156, 494, 599, 1216
SmoI CTYRAG 4 cut(s) 156, 494, 599, 1216
Sse9I AATT 3 cut(s) 269, 1018, 1340
SsiI CCGC 4 cut(s) 331, 448, 1059, 1145
SspMI CTAG 3 cut(s) 839, 884, 1405
StyD4I CCNGG 1 cut(s) 162
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 6 cut(s) 239, 763, 818, 860, 1005, 1259
TaqI TCGA 6 cut(s) 561, 911, 933, 972, 1008, 1197
TasI AATT 3 cut(s) 269, 1018, 1340
TatI WGTACW 3 cut(s) 699, 860, 897
TauI GCSGC 3 cut(s) 450, 1062, 1148
TfiI GAWTC 2 cut(s) 930, 1313
Tru1I TTAA 1 cut(s) 600
Tru9I TTAA 1 cut(s) 600
TscAI CASTG 1 cut(s) 1094
TseFI GTSAC 1 cut(s) 787
TseI GCWGC 1 cut(s) 1062
Tsp45I GTSAC 1 cut(s) 787
TspDTI ATGAA 3 cut(s) 81, 1305, 1353
TspGWI ACGGA 3 cut(s) 243, 338, 432
TspRI CASTG 1 cut(s) 1094
Tth111I GACNNNGTC 1 cut(s) 968
Vha464I CTTAAG 1 cut(s) 599
VneI GTGCAC 1 cut(s) 1270
VpaK11BI GGWCC 3 cut(s) 411, 520, 781
XmnI GAANNNNTTC 1 cut(s) 299
XspI CTAG 3 cut(s) 839, 884, 1405
ZrmI AGTACT 1 cut(s) 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.